Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.KXG0W2 Arachis hypogaea HOM05D005200 ORTHO05D005760 1.0e-78 296.6 144 100.0
arahy.Tifrunner.gnm1.ann1.56RDUW Arachis hypogaea HOM05D005200 ORTHO05D005760 2.0e-77 292.4 144 98.6
Phvul.010G123400 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 1.3e-41 173.3 141 66.7
Glyma.16G013600 Glycine max HOM05D005200 ORTHO05D005760 1.7e-41 172.9 142 66.2
VMungo0331G0914 Vigna mungo HOM05D005200 ORTHO05D005760 6.6e-41 171.0 141 67.4
Glyma.03G263400 Glycine max HOM05D005200 ORTHO05D005760 8.3e-36 154.1 145 64.1
Lalb_Chr10g0101121 Lupinus albus HOM05D005200 ORTHO05D005760 1.1e-35 153.7 141 61.0
Glyma.19G262400 Glycine max HOM05D005200 ORTHO05D005760 4.1e-35 151.8 145 63.4
Lalb_Chr04g0261221 Lupinus albus HOM05D005200 ORTHO05D005760 7.1e-35 151.0 144 61.1
Glyma.07G045700 Glycine max HOM05D005200 ORTHO05D005760 2.7e-34 149.1 142 59.9
Lalb_Chr17g0343251 Lupinus albus HOM05D005200 ORTHO05D005760 6.0e-34 147.9 141 63.8
Lj1g0005720 Lotus japonicus HOM05D005200 ORTHO05D005760 1.0e-33 147.1 154 57.8
Lalb_Chr15g0076711 Lupinus albus HOM05D005200 ORTHO05D005760 1.9e-32 142.9 144 54.2
Lj3g0024707 Lotus japonicus HOM05D005200 ORTHO05D005760 1.8e-30 136.3 145 58.6
TPR.G18172 Trifolium pratense HOM05D005200 ORTHO05D005760 8.9e-30 134.0 139 59.7
QL05p001275 Quercus lobata HOM05D005200 ORTHO05D005760 2.6e-29 132.5 149 50.3
VMungo1309G1714 Vigna mungo HOM05D005200 ORTHO05D005760 1.3e-28 130.2 145 53.1
arahy.Tifrunner.gnm1.ann1.F1PVR5 Arachis hypogaea HOM05D005200 ORTHO05D005760 3.8e-28 128.6 145 51.7
arahy.Tifrunner.gnm1.ann1.7PP1M3 Arachis hypogaea HOM05D005200 ORTHO05D005760 4.9e-28 128.3 146 51.4
CiPaw.01G211800 Carya illinoinensis HOM05D005200 ORTHO05D005760 1.2e-26 123.6 145 46.9
Medtr7g117550 Medicago truncatula HOM05D005200 ORTHO05D005760 1.2e-26 123.6 124 54.8
Haze_16132 Corylus avellana HOM05D005200 ORTHO05D005760 6.0e-26 121.3 145 51.7
CiPaw.02G131300 Carya illinoinensis HOM05D005200 ORTHO05D005760 7.3e-24 114.4 146 45.9
Medtr8g023100 Medicago truncatula HOM05D005200 ORTHO05D005760 7.3e-24 114.4 140 55.7
MELO3C024308.2 Cucumis melo HOM05D005200 ORTHO05D005760 2.4e-22 109.4 101 57.4
Dinv37821 Davidia involucrata HOM05D005200 ORTHO05D005760 5.2e-22 108.2 145 47.6
Sed0021338 Sechium edule HOM05D005200 ORTHO05D005760 9.0e-22 107.5 100 56.0
ClCG09G001380 Citrullus lanatus HOM05D005200 ORTHO05D005760 1.2e-21 107.1 150 46.7
Potri.001G163100 Populus trichocarpa HOM05D005200 ORTHO05D005760 1.5e-21 106.7 148 46.6
Phvul.009G261901 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 3.4e-21 105.5 90 57.8
CsaV3_7G033950 Cucumis sativus L. HOM05D005200 ORTHO05D005760 5.8e-21 104.8 142 45.8
Dinv20386 Davidia involucrata HOM05D005200 ORTHO05D005760 5.8e-21 104.8 144 47.2
Cfa003464 Carpinus fangiana HOM05D005200 ORTHO05D005760 1.3e-20 103.6 88 59.1
Sabra01G0129600 Salix brachista HOM05D005200 ORTHO05D005760 1.3e-20 103.6 147 42.9
Manes.11G013000 Manihot esculenta HOM05D005200 ORTHO05D005760 1.7e-20 103.2 141 42.6
TWI23G1266 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 4.9e-20 101.7 145 43.4
Cpa.g.sc25.187 Carica papaya HOM05D005200 ORTHO05D005760 6.4e-20 101.3 86 53.5
GSVIVG01016673001 Vitis vinifera HOM05D005200 ORTHO05D005760 8.4e-20 100.9 93 51.6
Duzib235G1369 Durio zibethinus HOM05D005200 ORTHO05D005760 1.1e-19 100.5 130 46.9
Sabra03G0043200 Salix brachista HOM05D005200 ORTHO05D005760 1.1e-19 100.5 146 44.5
Atru.chr1.4140 Acer truncatum HOM05D005200 ORTHO05D005760 2.4e-19 99.4 154 45.5
Ciclev10026732m.g Citrus clementina HOM05D005200 ORTHO05D005760 2.4e-19 99.4 146 46.6
Manes.04G150600 Manihot esculenta HOM05D005200 ORTHO05D005760 2.4e-19 99.4 137 43.1
Thecc.06G129700 Theobroma cacao HOM05D005200 ORTHO05D005760 2.4e-19 99.4 127 47.2
Psat4g165560 Pisum sativum HOM05D005200 ORTHO05D005760 7.1e-19 97.8 95 57.9
Gorai.011G055500 Gossypium raimondii HOM05D005200 ORTHO05D005760 9.3e-19 97.4 120 46.7
Potri.003G072400 Populus trichocarpa HOM05D005200 ORTHO05D005760 9.3e-19 97.4 119 43.7
CANSAT56G3023 Cannabis sativa HOM05D005200 ORTHO05D005760 6.0e-18 94.7 148 42.6
Gohir.D10G051950 Gossypium hirsutum HOM05D005200 ORTHO05D005760 6.0e-18 94.7 120 45.8
Gorai.010G173300 Gossypium raimondii HOM05D005200 ORTHO05D005760 6.0e-18 94.7 138 41.3
TWI14G0574 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 6.0e-18 94.7 119 47.9
Eucgr.I02161 Eucalyptus grandis HOM05D005200 ORTHO05D005760 1.0e-17 94.0 143 40.6
Gohir.A06G143500 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.0e-17 94.0 139 42.4
Duzib160G0856 Durio zibethinus HOM05D005200 ORTHO05D005760 1.3e-17 93.6 127 46.5
Actinidia21832 Actinidia chinensis HOM05D005200 ORTHO05D005760 3.9e-17 92.0 120 48.3
Gohir.A10G047648 Gossypium hirsutum HOM05D005200 ORTHO05D005760 3.9e-17 92.0 120 44.2
MD09G1173200 Malus domestica HOM05D005200 ORTHO05D005760 6.6e-17 91.3 136 44.1
COL.COLO4_30860 Corchorus olitorius HOM05D005200 ORTHO05D005760 1.9e-16 89.7 146 41.8
Gohir.D09G075300 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.3e-15 87.0 95 48.4
Gorai.006G090400 Gossypium raimondii HOM05D005200 ORTHO05D005760 1.3e-15 87.0 95 48.4
Rhsim08G0244400 Rhododendron simsii HOM05D005200 ORTHO05D005760 2.1e-15 86.3 118 43.2
Oeu008400.1 Olea europaea HOM05D005200 ORTHO05D005760 3.6e-15 85.5 93 50.5
Prupe.3G031300 Prunus persica HOM05D005200 ORTHO05D005760 6.2e-15 84.7 146 39.7
Actinidia26000 Actinidia chinensis HOM05D005200 ORTHO05D005760 1.4e-14 83.6 130 43.8
Gohir.D06G148800 Gossypium hirsutum HOM05D005200 ORTHO05D005760 2.4e-14 82.8 93 46.2
Oeu015475.1 Olea europaea HOM05D005200 ORTHO05D005760 3.1e-14 82.4 64 59.4
PSO135G0283 Papaver somniferum HOM05D005200 ORTHO05D005760 4.0e-14 82.0 145 41.4
Nn6g35724 Nelumbo nucifera HOM05D005200 ORTHO05D005760 1.2e-13 80.5 121 38.0
RcHm_v2.0_Chr2g0147821 Rosa chinensis HOM05D005200 ORTHO05D005760 1.2e-13 80.5 145 40.7
MD17G1154100 Malus domestica HOM05D005200 ORTHO05D005760 1.5e-13 80.1 145 40.7
PGR119G0182 Punica granatum HOM05D005200 ORTHO05D005760 1.5e-13 80.1 125 42.4
TAR626G1734 Trochodendron aralioides HOM05D005200 ORTHO05D005760 1.5e-13 80.1 145 38.6
A01p39430 Brassica napus HOM05D005200 ORTHO05D005760 3.4e-13 79.0 88 53.4
BraA01t03983Z Brassica rapa HOM05D005200 ORTHO05D005760 3.4e-13 79.0 88 53.4
Gohir.A09G075600 Gossypium hirsutum HOM05D005200 ORTHO05D005760 3.4e-13 79.0 93 45.2
Migut.I01128 Erythranthe guttata HOM05D005200 ORTHO05D005760 4.5e-13 78.6 64 57.8
MSTRG.10915 Avicennia marina HOM05D005200 ORTHO05D005760 5.8e-13 78.2 65 63.1
BraA05t22323Z Brassica rapa HOM05D005200 ORTHO05D005760 5.8e-13 78.2 87 51.7
A05p35100 Brassica napus HOM05D005200 ORTHO05D005760 7.6e-13 77.8 87 51.7
HanXRQChr10g0311991 Helianthus annuus HOM05D005200 ORTHO05D005760 7.6e-13 77.8 116 36.2
THA.LOC104815599 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 9.9e-13 77.4 109 42.2
Actinidia31148 Actinidia chinensis HOM05D005200 ORTHO05D005760 1.3e-12 77.0 147 39.5
C01p50260 Brassica napus HOM05D005200 ORTHO05D005760 1.7e-12 76.6 88 53.4
BolC1t04981H Brassica oleracea HOM05D005200 ORTHO05D005760 1.7e-12 76.6 88 53.4
BcaC09g48397 Brassica carinata HOM05D005200 ORTHO05D005760 2.2e-12 76.3 88 53.4
SalBow7G2254 Salvia bowleyana HOM05D005200 ORTHO05D005760 2.2e-12 76.3 60 60.0
BcaB06g25397 Brassica carinata HOM05D005200 ORTHO05D005760 2.9e-12 75.9 85 51.8
AUR62001409 Chenopodium quinoa HOM05D000001 ORTHO05D009753 2.9e-12 75.9 123 43.1
vmacro15084 Vaccinium macrocarpon HOM05D005200 ORTHO05D005760 3.8e-12 75.5 96 41.7
Lsat_1_v5_gn_4_92221 Lactuca sativa HOM05D005200 ORTHO05D005760 4.9e-12 75.1 91 39.6
FAN02G2923 Fragaria x ananassa HOM05D005200 ORTHO05D005760 6.4e-12 74.7 146 37.7
FAN14G3672 Fragaria x ananassa HOM05D005200 ORTHO05D005760 6.4e-12 74.7 146 37.7
THA.LOC104810392 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 6.4e-12 74.7 84 45.2
Thhalv10021716m.g Eutrema salsugineum HOM05D005200 ORTHO05D005760 8.4e-12 74.3 88 50.0
PGSC0003DMG400009175 Solanum tuberosum HOM05D005200 ORTHO05D005760 8.4e-12 74.3 66 57.6
Aa31LG8G1550 Aethionema arabicum HOM05D005200 ORTHO05D005760 1.1e-11 73.9 88 46.6
FvH4_6g35780 Fragaria vesca HOM05D005200 ORTHO05D005760 1.1e-11 73.9 146 37.7
FAN09G2652 Fragaria x ananassa HOM05D005200 ORTHO05D005760 1.1e-11 73.9 146 37.7
FAN14G2768 Fragaria x ananassa HOM05D005200 ORTHO05D005760 1.1e-11 73.9 146 37.7
HanXRQChr09g0277231 Helianthus annuus HOM05D005200 ORTHO05D005760 1.1e-11 73.9 67 50.7
THA.LOC104822615 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 1.1e-11 73.9 83 45.8
BcaC05g29096 Brassica carinata HOM05D005200 ORTHO05D005760 1.4e-11 73.6 84 51.2
C05p53060 Brassica napus HOM05D005200 ORTHO05D005760 1.4e-11 73.6 84 51.2
BolC5t33987H Brassica oleracea HOM05D005200 ORTHO05D005760 1.4e-11 73.6 84 51.2
CARHR089210 Cardamine hirsuta HOM05D005200 ORTHO05D005760 1.4e-11 73.6 89 50.6
FAN05G3446 Fragaria x ananassa HOM05D005200 ORTHO05D005760 1.4e-11 73.6 150 38.0
MBI19_g32869_MAGBIO Magnolia biondii HOM05D005200 ORTHO05D005760 1.4e-11 73.6 108 38.9
Aqoxy7G04178 Aquilegia oxysepala HOM05D005200 ORTHO05D005760 1.9e-11 73.2 108 39.8
AUR62025618 Chenopodium quinoa HOM05D000001 ORTHO05D009753 2.4e-11 72.8 71 52.1
Sp3g12570 Schrenkiella parvula HOM05D005200 ORTHO05D005760 3.2e-11 72.4 88 52.3
Solyc03g123580.4 Solanum lycopersicum HOM05D005200 ORTHO05D005760 4.2e-11 72.0 67 55.2
Sopen03g041350 Solanum pennellii HOM05D005200 ORTHO05D005760 4.2e-11 72.0 67 55.2
AT3G14280 Arabidopsis thaliana HOM05D005200 ORTHO05D005760 7.1e-11 71.2 88 51.1
Peaxi162Scf00038g02243 Petunia axillaris HOM05D005200 ORTHO05D005760 9.3e-11 70.9 65 56.9
Carub.0003s1397 Capsella rubella HOM05D005200 ORTHO05D005760 1.2e-10 70.5 87 48.3
Lsat_1_v5_gn_5_137940 Lactuca sativa HOM05D005200 ORTHO05D005760 1.2e-10 70.5 75 42.7
Nitab4.5_0008798g0020 Nicotiana tabacum HOM05D005200 ORTHO05D005760 1.6e-10 70.1 78 50.0
HPP92_005865 Vanilla planifolia HOM05D005200 ORTHO05D005760 2.1e-10 69.7 64 50.0
AL3G26600 Arabidopsis lyrata HOM05D005200 ORTHO05D005760 2.7e-10 69.3 58 58.6
ECA234G4728 Erigeron canadensis HOM05D005200 ORTHO05D005760 2.7e-10 69.3 67 50.7
BcaB04g18835 Brassica carinata HOM05D005200 ORTHO05D005760 6.0e-10 68.2 76 52.6
Cc04_g00760 Coffea canephora HOM05D005200 ORTHO05D005760 7.9e-10 67.8 124 37.9
Solyc12g055700.3 Solanum lycopersicum HOM05D005200 ORTHO05D005760 1.3e-09 67.0 66 53.0
HanXRQChr12g0360121 Helianthus annuus HOM05D005200 ORTHO05D005760 2.3e-09 66.2 88 38.6
PGSC0003DMG402028848 Solanum tuberosum HOM05D005200 ORTHO05D005760 2.3e-09 66.2 53 56.6
MSTRG.4536 Avicennia marina HOM05D005200 ORTHO05D005760 5.1e-09 65.1 36 72.2
Sopen12g024150 Solanum pennellii HOM05D005200 ORTHO05D005760 8.7e-09 64.3 67 52.2
Os10g0390701 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 1.5e-08 63.5 41 63.4
SGA_v2.0_scaffold71G23919 Striga asiatica HOM05D005200 ORTHO05D005760 2.5e-08 62.8 33 72.7
ClCG07G014310 Citrullus lanatus HOM05D005200 ORTHO05D005760 3.3e-08 62.4 45 64.4
Pp3c19_6810 Physcomitrium patens HOM05D023101 ORTHO05D005760 4.3e-08 62.0 67 46.3
Pp3c22_2900 Physcomitrium patens HOM05D023101 ORTHO05D005760 4.3e-08 62.0 45 57.8
ATR0099G034 Amborella trichopoda HOM05D005200 ORTHO05D005760 7.4e-08 61.2 52 51.9
Os06g0193300 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 7.4e-08 61.2 40 57.5
Ah.08g217360 Amaranthus hybridus HOM05D005200 ORTHO05D005760 9.6e-08 60.8 59 55.9
SalBow6G5493 Salvia bowleyana HOM05D005200 ORTHO05D005760 1.3e-07 60.5 56 57.1
DCAR_007659 Daucus carota HOM05D005200 ORTHO05D005760 1.6e-07 60.1 80 42.5
Zm00001eb203790 Zea mays HOM05D005200 ORTHO05D005760 2.1e-07 59.7 31 74.2
Sed0016877 Sechium edule HOM05D005200 ORTHO05D005760 2.8e-07 59.3 41 65.9
CsaV3_3G030990 Cucumis sativus L. HOM05D005200 ORTHO05D005760 6.2e-07 58.2 43 58.1
Zm00001eb278460 Zea mays HOM05D005200 ORTHO05D005760 6.2e-07 58.2 32 68.8
MELO3C022697.2 Cucumis melo HOM05D005200 ORTHO05D005760 1.8e-06 56.6 43 55.8
Ah.15g094950 Amaranthus hybridus HOM05D005200 ORTHO05D005760 2.4e-06 56.2 58 46.6


User provided reference genes

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