Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.EX6GR6 Arachis hypogaea HOM05D003576 ORTHO05D004124 2.2e-57 225.3 109 100.0
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 2.2e-41 172.2 92 93.5
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 8.5e-41 170.2 92 91.3
Psat1g098680 Pisum sativum HOM05D003576 ORTHO05D004124 5.3e-35 151.0 92 83.7
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 9.1e-35 150.2 92 82.6
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 3.5e-34 148.3 92 80.4
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 4.5e-34 147.9 92 79.3
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 5.9e-34 147.5 92 81.5
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 1.5e-32 142.9 92 79.3
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 1.9e-32 142.5 92 79.3
arahy.Tifrunner.gnm1.ann1.CPN596 Arachis hypogaea HOM05D003576 ORTHO05D004124 1.6e-31 139.4 82 86.6
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 2.1e-31 139.0 92 77.2
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 4.7e-31 137.9 92 76.1
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 5.2e-30 134.4 97 70.1
Psat1g000040 Pisum sativum HOM05D003576 ORTHO05D004124 1.5e-29 132.9 82 81.7
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 3.7e-28 128.3 92 72.8
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 1.4e-27 126.3 93 69.9
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 7.0e-27 124.0 93 69.9
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 7.0e-27 124.0 92 69.6
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 7.0e-27 124.0 92 66.3
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 5.9e-26 120.9 96 64.6
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 1.0e-25 120.2 92 64.1
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 2.3e-25 119.0 92 62.0
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 2.3e-25 119.0 92 64.1
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 3.8e-25 118.2 92 64.1
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 3.8e-25 118.2 92 65.2
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 6.5e-25 117.5 92 62.0
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 8.6e-25 117.1 92 60.9
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 8.6e-25 117.1 92 60.9
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 8.6e-25 117.1 94 62.8
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 1.5e-24 116.3 92 62.0
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.5e-24 116.3 92 63.0
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.5e-24 116.3 92 63.0
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 1.5e-24 116.3 91 62.6
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 4.2e-24 114.8 90 63.3
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 5.5e-24 114.4 92 62.0
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 7.2e-24 114.0 89 67.4
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 7.2e-24 114.0 92 60.9
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 1.2e-23 113.2 92 63.0
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 1.6e-23 112.8 94 62.8
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 2.1e-23 112.5 94 63.8
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 2.8e-23 112.1 93 62.4
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 2.8e-23 112.1 92 60.9
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 4.7e-23 111.3 92 60.9
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 8.0e-23 110.5 92 60.9
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 1.0e-22 110.2 92 64.1
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 1.0e-22 110.2 92 60.9
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 1.0e-22 110.2 94 61.7
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 1.8e-22 109.4 93 61.3
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 3.0e-22 108.6 92 62.0
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 4.0e-22 108.2 93 62.4
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 6.8e-22 107.5 92 62.0
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 6.8e-22 107.5 92 62.0
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 1.2e-21 106.7 94 60.6
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 2.0e-21 105.9 92 58.7
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 2.0e-21 105.9 92 58.7
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 2.6e-21 105.5 92 62.0
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 2.6e-21 105.5 92 58.7
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 3.4e-21 105.1 93 58.1
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 4.4e-21 104.8 92 59.8
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 5.7e-21 104.4 95 60.0
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 7.5e-21 104.0 93 59.1
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 9.8e-21 103.6 94 56.4
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 9.8e-21 103.6 92 58.7
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 1.3e-20 103.2 97 56.7
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 1.3e-20 103.2 99 58.6
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 1.3e-20 103.2 93 55.9
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 1.7e-20 102.8 92 58.7
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 6.3e-20 100.9 92 58.7
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 8.3e-20 100.5 92 56.5
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 1.8e-19 99.4 92 55.4
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 1.2e-18 96.7 92 53.3
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 3.5e-18 95.1 92 54.3
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 3.5e-18 95.1 98 52.0
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 1.0e-17 93.6 93 53.8
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 1.3e-17 93.2 100 54.0
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 1.7e-17 92.8 98 50.0
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 6.6e-17 90.9 92 57.6
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 8.6e-17 90.5 101 47.5
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.9e-16 89.4 105 49.5
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 2.5e-16 89.0 92 54.3
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 3.3e-16 88.6 92 51.1
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 3.3e-16 88.6 92 51.1
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 3.3e-16 88.6 95 47.4
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 4.3e-16 88.2 101 47.5
arahy.Tifrunner.gnm1.ann1.Q5958J Arachis hypogaea HOM05D003576 ORTHO05D004124 9.5e-16 87.0 80 60.0
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 6.1e-15 84.3 90 50.0
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 6.1e-15 84.3 90 50.0
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 6.1e-15 84.3 88 53.4
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 6.1e-15 84.3 88 53.4
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 6.1e-15 84.3 88 53.4
CDE03G0152 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 6.1e-15 84.3 92 51.1
Glyma.09G080600 Glycine max HOM05D003576 ORTHO05D004124 6.1e-15 84.3 57 73.7
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 1.8e-14 82.8 88 51.1
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 1.8e-14 82.8 88 51.1
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 1.2e-13 80.1 92 44.6
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 2.0e-13 79.3 95 48.4
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 2.0e-13 79.3 95 47.4
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 3.4e-13 78.6 92 51.1
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 3.4e-13 78.6 92 51.1
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 4.4e-13 78.2 95 47.4
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 4.4e-13 78.2 94 50.0
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 5.8e-13 77.8 95 46.3
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 5.8e-13 77.8 77 54.5
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 5.8e-13 77.8 93 46.2
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.3e-12 76.6 96 44.8
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 1.7e-12 76.3 95 48.4
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 2.2e-12 75.9 93 44.1
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 2.2e-12 75.9 93 44.1
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 4.9e-12 74.7 93 47.3
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 6.4e-12 74.3 91 46.2
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 1.1e-11 73.6 98 44.9
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 3.2e-11 72.0 95 44.2
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 1.2e-10 70.1 93 46.2
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 1.2e-10 70.1 59 55.9
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 1.6e-10 69.7 139 33.1
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 2.7e-10 68.9 82 47.6
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 3.5e-10 68.6 77 50.6
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 4.6e-10 68.2 92 43.5
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 1.0e-09 67.0 59 52.5
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 1.3e-09 66.6 100 41.0
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 1.3e-09 66.6 100 41.0
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 3.9e-09 65.1 89 44.9
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 6.6e-09 64.3 44 65.9
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 1.1e-08 63.5 59 50.8
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 1.5e-08 63.2 50 58.0
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 3.3e-08 62.0 128 33.6
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 9.5e-08 60.5 59 50.8
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 1.6e-07 59.7 100 38.0
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 2.8e-07 58.9 44 61.4
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 3.6e-07 58.5 45 66.7


User provided reference genes

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