Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.EVE7SV Arachis hypogaea HOM05D005138 ORTHO05D006318 5.3e-69 264.2 133 100.0
arahy.Tifrunner.gnm1.ann1.K7P4IE Arachis hypogaea HOM05D005138 ORTHO05D006318 1.5e-68 262.7 133 99.2
Cfa010943 Carpinus fangiana HOM05D005138 ORTHO05D006318 5.1e-56 221.1 131 82.4
Haze_03004 Corylus avellana HOM05D005138 ORTHO05D006318 2.0e-55 219.2 131 80.9
CiPaw.13G015300 Carya illinoinensis HOM05D005138 ORTHO05D006318 3.3e-55 218.4 133 80.5
CiPaw.14G008900 Carya illinoinensis HOM05D005138 ORTHO05D006318 1.1e-53 213.4 131 76.3
TAR362G0697 Trochodendron aralioides HOM05D005138 ORTHO05D006318 1.5e-52 209.5 131 74.8
Duzib114G0920 Durio zibethinus HOM05D005138 ORTHO05D006318 2.2e-51 205.7 131 74.0
CANSAT56G0322 Cannabis sativa HOM05D005138 ORTHO05D006318 2.9e-51 205.3 131 74.0
Duzib128G1035 Durio zibethinus HOM05D005138 ORTHO05D006318 2.9e-51 205.3 131 74.8
Manes.11G007200 Manihot esculenta HOM05D005138 ORTHO05D006318 2.9e-51 205.3 131 74.8
Cc07_g21240 Coffea canephora HOM05D005138 ORTHO05D006318 3.8e-51 204.9 133 73.7
PGR044G2178 Punica granatum HOM05D005138 ORTHO05D006318 5.0e-51 204.5 131 74.0
Gorai.011G218700 Gossypium raimondii HOM05D005138 ORTHO05D006318 1.4e-50 203.0 131 73.3
Thecc.10G149000 Theobroma cacao HOM05D005138 ORTHO05D006318 1.9e-50 202.6 131 74.0
Dinv44706 Davidia involucrata HOM05D005138 ORTHO05D006318 2.5e-50 202.2 133 72.9
Glyma.15G231900 Glycine max HOM05D005138 ORTHO05D006318 2.5e-50 202.2 128 77.3
Manes.04G157100 Manihot esculenta HOM05D005138 ORTHO05D006318 4.2e-50 201.4 131 73.3
Gohir.D10G195900 Gossypium hirsutum HOM05D005138 ORTHO05D006318 5.5e-50 201.1 131 72.5
Prupe.2G041500 Prunus persica HOM05D005138 ORTHO05D006318 5.5e-50 201.1 131 74.8
Zm00001eb001400 Zea mays HOM05D005138 ORTHO05D006318 5.5e-50 201.1 131 72.5
Aqoxy2G00421 Aquilegia oxysepala HOM05D005138 ORTHO05D006318 9.4e-50 200.3 133 75.2
Lsat_1_v5_gn_1_116501 Lactuca sativa HOM05D005138 ORTHO05D006318 9.4e-50 200.3 124 74.2
MD02G1279300 Malus domestica HOM05D005138 ORTHO05D006318 9.4e-50 200.3 131 72.5
Psat4g099920 Pisum sativum HOM05D005138 ORTHO05D006318 9.4e-50 200.3 134 71.6
Sed0002262 Sechium edule HOM05D005138 ORTHO05D006318 9.4e-50 200.3 131 71.0
Actinidia34769 Actinidia chinensis HOM05D005138 ORTHO05D006318 1.2e-49 199.9 127 74.8
Gohir.A10G188000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 1.2e-49 199.9 131 71.8
MD07G1047200 Malus domestica HOM05D005138 ORTHO05D006318 1.2e-49 199.9 131 74.0
AUR62031745 Chenopodium quinoa HOM05D005138 ORTHO05D006318 1.6e-49 199.5 128 74.2
AUR62032630 Chenopodium quinoa HOM05D005138 ORTHO05D006318 1.6e-49 199.5 128 74.2
Cpa.g.sc169.49 Carica papaya HOM05D005138 ORTHO05D006318 2.1e-49 199.1 131 74.0
Ca_23972_v3 Cicer arietinum L. HOM05D005138 ORTHO05D006318 2.1e-49 199.1 134 72.4
QL04p018722 Quercus lobata HOM05D005138 ORTHO05D006318 2.7e-49 198.7 131 71.8
SGA_v2.0_scaffold43G16284 Striga asiatica HOM05D005138 ORTHO05D006318 3.6e-49 198.4 131 71.0
vmacro10390 Vaccinium macrocarpon HOM05D005138 ORTHO05D006318 3.6e-49 198.4 131 72.5
Glyma.09G091002 Glycine max HOM05D005138 ORTHO05D006318 4.7e-49 198.0 128 75.8
Phvul.011G203300 Phaseolus vulgaris HOM05D005138 ORTHO05D006318 4.7e-49 198.0 131 72.5
Glyma.13G193600 Glycine max HOM05D005138 ORTHO05D006318 6.1e-49 197.6 128 75.8
TPR.G8538 Trifolium pratense HOM05D005138 ORTHO05D006318 6.1e-49 197.6 134 70.9
VMungo1127G1184 Vigna mungo HOM05D005138 ORTHO05D006318 7.9e-49 197.2 131 71.8
FAN03G2670 Fragaria x ananassa HOM05D005138 ORTHO05D006318 1.0e-48 196.8 131 71.8
FAN06G4838 Fragaria x ananassa HOM05D005138 ORTHO05D006318 1.0e-48 196.8 131 71.8
Lj3g0022103 Lotus japonicus HOM05D005138 ORTHO05D006318 1.0e-48 196.8 132 72.7
MELO3C012486.2 Cucumis melo HOM05D005138 ORTHO05D006318 1.4e-48 196.4 139 69.1
Hma1.2p1_0837F.1_g226140 Hydrangea macrophylla HOM05D005138 ORTHO05D006318 1.4e-48 196.4 131 69.5
Medtr8g040150 Medicago truncatula HOM05D005138 ORTHO05D006318 1.8e-48 196.1 134 69.4
Sc10g0004520 Simmondsia chinensis HOM05D005138 ORTHO05D006318 1.8e-48 196.1 124 75.8
RcHm_v2.0_Chr1g0325871 Rosa chinensis HOM05D005138 ORTHO05D006318 2.3e-48 195.7 131 71.8
Ciclev10002826m.g Citrus clementina HOM05D005138 ORTHO05D006318 3.0e-48 195.3 131 70.2
HanXRQChr11g0341771 Helianthus annuus HOM05D005138 ORTHO05D006318 3.0e-48 195.3 124 72.6
HPP92_021197 Vanilla planifolia HOM05D005138 ORTHO05D006318 3.0e-48 195.3 134 72.4
Hund13385 Selenicereus undatus HOM05D005138 ORTHO05D006318 3.9e-48 194.9 123 74.0
CDE04G1620 Ceratophyllum demersum HOM05D005138 ORTHO05D006318 6.7e-48 194.1 131 70.2
CsaV3_5G036890 Cucumis sativus L. HOM05D005138 ORTHO05D006318 8.8e-48 193.7 127 72.4
Eucgr.G03216 Eucalyptus grandis HOM05D005138 ORTHO05D006318 8.8e-48 193.7 131 71.0
FvH4_7g03540 Fragaria vesca HOM05D005138 ORTHO05D006318 8.8e-48 193.7 131 71.0
EL10Ac2g02769 Beta vulgaris HOM05D005138 ORTHO05D000392 1.1e-47 193.4 128 71.1
MBI13_g09225_MAGBIO Magnolia biondii HOM05D005138 ORTHO05D006318 2.0e-47 192.6 131 67.9
CSS0020361 Camellia sinensis var. sinensis HOM05D005138 ORTHO05D006318 2.6e-47 192.2 128 71.1
FAN10G0593 Fragaria x ananassa HOM05D005138 ORTHO05D006318 3.3e-47 191.8 131 70.2
FAN10G2449 Fragaria x ananassa HOM05D005138 ORTHO05D006318 3.3e-47 191.8 131 70.2
Os07g0640100 Oryza sativa ssp. japonica HOM05D005138 ORTHO05D006318 3.3e-47 191.8 133 69.9
THA.LOC104826756 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 3.3e-47 191.8 127 70.9
SGA_v2.0_scaffold232G43489 Striga asiatica HOM05D005138 ORTHO05D006318 7.4e-47 190.7 131 69.5
Nitab4.5_0010402g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 9.7e-47 190.3 133 66.9
ATR1096G082 Amborella trichopoda HOM05D005138 ORTHO05D006318 1.7e-46 189.5 133 66.9
Ah.10g030100 Amaranthus hybridus HOM05D005138 ORTHO05D006318 2.8e-46 188.7 123 70.7
PSO384G1335 Papaver somniferum HOM05D005138 ORTHO05D006318 2.8e-46 188.7 131 67.2
Lalb_Chr03g0032141 Lupinus albus HOM05D005138 ORTHO05D006318 3.7e-46 188.3 131 67.9
PSO135G0826 Papaver somniferum HOM05D005138 ORTHO05D006318 3.7e-46 188.3 131 67.2
Aqoxy2G00420 Aquilegia oxysepala HOM05D000001 ORTHO05D007291 4.8e-46 188.0 129 72.9
Atru.chr12.1279 Acer truncatum HOM05D005138 ORTHO05D006318 6.3e-46 187.6 131 66.4
Ah.12g059980 Amaranthus hybridus HOM05D005138 ORTHO05D006318 1.1e-45 186.8 128 70.3
TWI74G0500 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 2.4e-45 185.7 131 67.9
Sabra01G0021400 Salix brachista HOM05D005138 ORTHO05D006318 3.1e-45 185.3 130 66.9
TWI38G0338 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 3.1e-45 185.3 130 66.2
Potri.001G029900 Populus trichocarpa HOM05D005138 ORTHO05D006318 5.3e-45 184.5 130 66.9
DCAR_029715 Daucus carota HOM05D005138 ORTHO05D006318 7.0e-45 184.1 131 66.4
Hund15745 Selenicereus undatus HOM05D005138 ORTHO05D006318 7.0e-45 184.1 124 71.8
Aa31LG3G6480 Aethionema arabicum HOM05D005138 ORTHO05D006318 2.0e-44 182.6 127 68.5
Migut.N01855 Erythranthe guttata HOM05D005138 ORTHO05D006318 2.0e-44 182.6 131 67.2
Sopen01g016660 Solanum pennellii HOM05D005138 ORTHO05D006318 4.5e-44 181.4 133 65.4
THA.LOC104799320 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 1.0e-43 180.3 127 69.3
A03p37550 Brassica napus HOM05D005138 ORTHO05D006318 1.7e-43 179.5 127 67.7
Solyc01g022750.3 Solanum lycopersicum HOM05D005138 ORTHO05D006318 1.7e-43 179.5 133 64.7
BcaB04g18689 Brassica carinata HOM05D005138 ORTHO05D006318 2.9e-43 178.7 127 67.7
PGSC0003DMG400004276 Solanum tuberosum HOM05D005138 ORTHO05D006318 2.9e-43 178.7 131 64.1
unitig_899.g15579 Utricularia gibba HOM05D005138 ORTHO05D006318 2.9e-43 178.7 131 67.2
Thhalv10021751m.g Eutrema salsugineum HOM05D005138 ORTHO05D006318 5.0e-43 177.9 127 66.9
BcaC09g48226 Brassica carinata HOM05D005138 ORTHO05D006318 6.5e-43 177.6 127 66.9
C01p53060 Brassica napus HOM05D005138 ORTHO05D006318 6.5e-43 177.6 127 66.9
C03p45540 Brassica napus HOM05D005138 ORTHO05D006318 6.5e-43 177.6 127 66.9
CAN.G1362.7 Capsicum annuum HOM05D005138 ORTHO05D006318 1.1e-42 176.8 129 66.7
Carub.0003s1162 Capsella rubella HOM05D005138 ORTHO05D006318 1.4e-42 176.4 127 65.4
Sp3g10480 Schrenkiella parvula HOM05D005138 ORTHO05D006318 1.4e-42 176.4 127 66.9
AT3G12260 Arabidopsis thaliana HOM05D005138 ORTHO05D006318 1.9e-42 176.0 128 64.8
CARHR086810 Cardamine hirsuta HOM05D005138 ORTHO05D006318 2.5e-42 175.6 127 65.4
AL3G23920 Arabidopsis lyrata HOM05D005138 ORTHO05D006318 4.2e-42 174.9 127 64.6
A05p37100 Brassica napus HOM05D005138 ORTHO05D006318 6.1e-41 171.0 136 64.0
C05p55530 Brassica napus HOM05D005138 ORTHO05D006318 6.1e-41 171.0 136 64.0
BolC3t16831H Brassica oleracea HOM05D005138 ORTHO05D006318 6.1e-41 171.0 136 63.2
BraA05t22507Z Brassica rapa HOM05D005138 ORTHO05D006318 6.1e-41 171.0 136 64.0
BolC5t34219H Brassica oleracea HOM05D005138 ORTHO05D006318 1.8e-40 169.5 136 63.2
BraA03t12909Z Brassica rapa HOM05D005138 ORTHO05D006318 1.8e-40 169.5 137 62.0
Nitab4.5_0004389g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 2.3e-40 169.1 156 55.1
SalBow5G1163 Salvia bowleyana HOM05D005138 ORTHO05D006318 3.0e-40 168.7 170 51.8
BolC1t05249H Brassica oleracea HOM05D005138 ORTHO05D006318 3.9e-40 168.3 140 60.7
MSTRG.5074 Avicennia marina HOM05D005138 ORTHO05D006318 6.7e-40 167.5 131 62.6
Nitab4.5_0000254g0180 Nicotiana tabacum HOM05D005138 ORTHO05D006318 1.8e-37 159.5 133 60.9
Peaxi162Scf00062g02216 Petunia axillaris HOM05D005138 ORTHO05D006318 3.5e-36 155.2 131 58.0
ECA248G2587 Erigeron canadensis HOM05D005138 ORTHO05D006318 5.9e-36 154.5 97 74.2
Peaxi162Scf01042g00115 Petunia axillaris HOM05D005138 ORTHO05D006318 2.2e-35 152.5 133 56.4
Mapoly0055s0110 Marchantia polymorpha HOM05D005138 ORTHO05D006318 6.1e-33 144.4 130 54.6
Pp3c1_37620 Physcomitrium patens HOM05D005138 ORTHO05D006318 8.0e-33 144.1 129 54.3
GSVIVG01036643001 Vitis vinifera HOM05D005138 ORTHO05D006318 1.0e-32 143.7 93 72.0
Actinidia38920 Actinidia chinensis HOM05D005138 ORTHO05D006318 4.0e-32 141.7 127 59.1
Pp3c2_3180 Physcomitrium patens HOM05D005138 ORTHO05D006318 6.8e-32 141.0 129 53.5
CBR_g52457 Chara braunii HOM05D005138 ORTHO05D006318 1.3e-30 136.7 132 52.3
PGSC0003DMG400005271 Solanum tuberosum HOM05D005138 ORTHO05D006318 7.0e-29 131.0 95 65.3
ClCG05G026950 Citrullus lanatus HOM05D005138 ORTHO05D006318 1.2e-23 113.6 81 66.7
Rhsim09G0131900 Rhododendron simsii HOM05D005138 ORTHO05D006318 2.0e-23 112.8 72 75.0
Gorai.004G120800 Gossypium raimondii HOM05D005138 ORTHO05D006318 4.4e-23 111.7 75 72.0
Lalb_Chr19g0132971 Lupinus albus HOM05D005138 ORTHO05D006318 4.4e-23 111.7 76 71.1
COL.COLO4_20706 Corchorus olitorius HOM05D005138 ORTHO05D006318 2.8e-22 109.0 71 71.8
Gohir.A10G188200 Gossypium hirsutum HOM05D005138 ORTHO05D006318 3.7e-22 108.6 75 70.7
Lj2A602G38 Lonicera japonica HOM05D005138 ORTHO05D006318 4.1e-21 105.1 71 67.6
Gohir.D03G123000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 7.0e-21 104.4 71 71.8
ClCG00G004230 Citrullus lanatus HOM05D005138 ORTHO05D006318 1.0e-19 100.5 60 76.7
ClCG05G026940 Citrullus lanatus HOM05D005138 ORTHO05D006318 1.0e-19 100.5 60 76.7
PGSC0003DMG401025557 Solanum tuberosum HOM05D005138 ORTHO05D006318 3.8e-19 98.6 72 65.3
MD07G1046900 Malus domestica HOM05D005138 ORTHO05D006318 1.1e-18 97.1 61 73.8
Nn7g36804 Nelumbo nucifera HOM05D005138 ORTHO05D006318 1.1e-18 97.1 63 71.4
SMO364G0517 Selaginella moellendorffii HOM05D005138 ORTHO05D006318 3.3e-18 95.5 127 37.0
COL.COLO4_20705 Corchorus olitorius HOM05D005138 ORTHO05D006318 4.2e-18 95.1 60 70.0
RcHm_v2.0_Chr1g0325941 Rosa chinensis HOM05D005138 ORTHO05D006318 1.2e-17 93.6 69 66.7
BcaC01g04057 Brassica carinata HOM05D005138 ORTHO05D006318 8.0e-17 90.9 68 60.3
CAN.G575.4 Capsicum annuum HOM05D005138 ORTHO05D006318 1.8e-16 89.7 77 54.5
Oeu064133.1 Olea europaea HOM05D005138 ORTHO05D006318 4.4e-15 85.1 56 73.2
AUR62042115 Chenopodium quinoa HOM05D005138 ORTHO05D006318 9.8e-15 84.0 53 77.4
Lalb_Chr19g0132981 Lupinus albus HOM05D005138 ORTHO05D006318 6.3e-14 81.3 62 61.3
MCO10G366 Micromonas commoda HOM05D005138 ORTHO05D006318 1.6e-12 76.6 113 36.3
VMungo0464G2031 Vigna mungo HOM05D005138 ORTHO05D011906 1.6e-12 76.6 58 62.1
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 3.5e-12 75.5 77 51.9
SEGI_36145 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 3.5e-12 75.5 74 45.9
Cre12.g555250 Chlamydomonas reinhardtii HOM05D005138 ORTHO05D006318 2.5e-10 69.3 134 32.1
PRCOL_00003180 Prasinoderma coloniale HOM05D000737 ORTHO05D000581 1.3e-06 57.0 104 30.8
SEGI_02182 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 2.2e-06 56.2 58 36.2


User provided reference genes

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