Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 0.0e+00 1497.6 771 100.0
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 0.0e+00 1484.5 771 99.2
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 0.0e+00 1174.5 777 79.5
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1153.3 781 77.5
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 0.0e+00 1148.3 774 78.3
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1145.6 776 76.7
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1145.6 776 76.7
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 0.0e+00 1145.2 777 77.0
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 0.0e+00 1133.2 789 75.5
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 0.0e+00 1130.5 782 76.3
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 0.0e+00 1129.8 788 76.3
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 0.0e+00 1128.6 788 75.1
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 0.0e+00 1124.8 785 74.8
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 0.0e+00 1121.3 767 77.8
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 0.0e+00 1120.5 783 75.6
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 0.0e+00 1117.4 788 75.1
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 0.0e+00 1116.7 781 74.6
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 0.0e+00 1114.4 773 75.8
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 0.0e+00 1114.0 777 75.3
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 0.0e+00 1112.1 781 76.4
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 0.0e+00 1110.1 789 73.6
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 0.0e+00 1105.9 740 77.6
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 0.0e+00 1104.4 781 74.1
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 0.0e+00 1099.7 775 74.7
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 0.0e+00 1097.4 765 75.0
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 0.0e+00 1095.9 795 73.0
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 0.0e+00 1094.7 776 74.5
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 0.0e+00 1094.3 789 73.3
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 0.0e+00 1092.8 783 74.7
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 0.0e+00 1092.8 793 73.6
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 0.0e+00 1092.4 785 74.3
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 0.0e+00 1090.9 768 73.6
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1087.8 794 72.8
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 0.0e+00 1087.8 728 75.7
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1087.8 781 73.0
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 0.0e+00 1087.4 793 72.8
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 0.0e+00 1085.1 769 73.7
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1085.1 799 72.0
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 0.0e+00 1083.2 783 74.2
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1080.1 780 72.8
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1080.1 781 72.0
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1079.3 780 72.7
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 0.0e+00 1078.2 758 73.2
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 0.0e+00 1077.4 769 73.1
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 0.0e+00 1077.4 766 73.1
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1077.0 780 72.3
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 0.0e+00 1075.8 774 72.9
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 0.0e+00 1075.1 793 72.3
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 1.1e-311 1072.8 771 73.2
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 6.8e-310 1067.0 781 71.8
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 2.0e-309 1065.4 758 73.4
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 7.5e-309 1063.5 783 70.8
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 1.4e-307 1059.3 749 73.8
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 3.2e-307 1058.1 713 77.0
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 2.0e-306 1055.4 785 70.7
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 4.6e-306 1054.3 782 71.4
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 7.8e-306 1053.5 757 71.7
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 2.3e-305 1052.0 698 76.9
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 2.5e-304 1048.5 814 68.3
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 3.3e-304 1048.1 785 70.1
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 9.5e-304 1046.6 747 71.8
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 1.2e-303 1046.2 790 69.6
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 1.4e-302 1042.7 702 76.5
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 5.8e-301 1037.3 806 69.7
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 4.1e-299 1031.2 756 72.5
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 7.1e-299 1030.4 718 75.1
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 7.8e-298 1026.9 771 72.2
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 7.8e-298 1026.9 728 75.3
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 1.0e-297 1026.5 774 72.1
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 2.3e-297 1025.4 822 67.8
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 1.1e-296 1023.1 746 72.1
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 1.5e-296 1022.7 788 70.4
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 9.5e-296 1020.0 730 73.6
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 1.6e-295 1019.2 729 74.3
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 1.6e-295 1019.2 726 72.7
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 2.1e-295 1018.8 732 74.0
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 2.8e-295 1018.5 775 71.7
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 6.2e-295 1017.3 722 75.1
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 1.4e-294 1016.1 774 72.1
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 1.4e-294 1016.1 774 71.8
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 2.3e-294 1015.4 722 75.1
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 4.4e-293 1011.1 723 74.8
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 5.8e-293 1010.7 726 71.6
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 2.9e-292 1008.4 723 74.4
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 7.1e-291 1003.8 697 74.6
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 3.5e-290 1001.5 774 71.1
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 1.0e-289 1000.0 844 64.6
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 9.6e-288 993.4 651 78.2
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 1.1e-286 989.9 780 71.0
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 1.2e-285 986.5 723 70.7
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 2.3e-281 972.2 766 67.5
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 5.1e-281 971.1 726 71.2
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 2.1e-279 965.7 730 70.4
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 8.1e-279 963.8 760 67.4
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 8.1e-279 963.8 699 73.0
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 2.7e-266 922.2 750 66.0
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 2.0e-240 836.3 638 74.3
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 2.6e-229 799.3 529 75.6
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 1.3e-228 797.0 532 74.8
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 5.3e-222 775.0 713 57.6
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 1.6e-218 763.5 716 57.4
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 8.0e-218 761.1 736 55.6
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.4e-217 760.4 727 54.6
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 1.2e-216 757.3 751 53.9
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.5e-203 713.0 541 63.0
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 4.4e-200 702.2 531 64.8
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 1.0e-196 691.0 529 64.8
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 6.0e-181 638.6 518 61.2
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 2.2e-175 620.2 414 75.1
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 2.8e-170 603.2 394 76.9
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 5.5e-150 535.8 414 64.5
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 7.4e-139 498.8 343 75.2
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 5.0e-135 486.1 269 85.5
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 1.7e-95 354.8 489 42.3
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 1.5e-91 341.7 601 40.3
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 1.1e-89 335.5 689 34.1
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 4.5e-88 330.1 269 62.5
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 1.6e-80 305.1 278 59.7
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 4.6e-80 303.5 276 61.6
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 2.3e-68 264.6 583 32.6
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 9.2e-65 252.7 342 47.1
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 7.9e-40 169.9 99 78.8
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 1.6e-37 162.2 83 88.0
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 1.5e-35 155.6 162 56.8
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 7.1e-33 146.7 104 71.2
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 1.1e-22 112.8 128 46.9
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 4.8e-21 107.5 123 48.0
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 1.1e-20 106.3 54 87.0
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 4.6e-16 90.9 58 74.1
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 4.3e-14 84.3 105 43.8
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 3.1e-12 78.2 74 60.8
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 1.0e-10 73.2 41 80.5
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 5.0e-10 70.9 59 62.7
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 7.9e-08 63.5 84 41.7
TPR.G7450 Trifolium pratense HOM05D017186 ORTHO05D411297 4.4e-06 57.8 64 50.0
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 9.7e-06 56.6 79 41.8


User provided reference genes

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