Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 1.6e-135 486.1 252 100.0
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 3.7e-132 474.9 252 98.0
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 7.6e-101 370.9 249 76.3
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 1.3e-97 360.1 252 75.4
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 2.5e-96 355.9 243 76.1
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 5.6e-96 354.8 243 76.5
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 2.8e-95 352.4 252 73.4
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 6.2e-95 351.3 240 75.4
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 1.1e-94 350.5 243 74.9
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 4.0e-94 348.6 254 74.0
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 2.2e-92 342.8 231 77.1
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 1.1e-83 313.9 199 78.9
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 1.9e-80 303.1 200 77.0
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.3e-79 300.4 242 69.4
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 1.4e-78 297.0 201 77.1
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 1.8e-78 296.6 238 68.9
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 2.4e-78 296.2 240 68.3
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 5.3e-78 295.0 247 67.2
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 6.9e-78 294.7 240 68.3
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 1.2e-77 293.9 247 66.4
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 1.2e-77 293.9 232 66.4
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 2.0e-77 293.1 240 68.8
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 2.0e-77 293.1 240 68.8
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 3.4e-77 292.4 242 66.5
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 2.2e-76 289.7 244 66.0
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 2.9e-76 289.3 247 66.0
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 2.9e-76 289.3 246 63.8
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 5.0e-76 288.5 239 68.2
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 5.0e-76 288.5 246 63.4
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 5.0e-76 288.5 225 70.7
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 6.5e-76 288.1 235 68.5
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 1.4e-75 287.0 235 67.2
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 1.4e-75 287.0 239 66.5
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 1.9e-75 286.6 244 62.7
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 2.5e-75 286.2 240 66.7
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 3.2e-75 285.8 266 63.2
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 3.2e-75 285.8 247 64.4
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 7.2e-75 284.6 247 66.0
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 1.2e-74 283.9 249 64.3
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 1.6e-74 283.5 250 61.2
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 1.6e-74 283.5 233 68.2
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 2.1e-74 283.1 242 66.5
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 2.7e-74 282.7 199 72.9
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 7.9e-74 281.2 239 67.8
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 1.0e-73 280.8 252 65.5
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 1.0e-73 280.8 252 65.5
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 1.4e-73 280.4 242 65.3
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 2.3e-73 279.6 242 65.7
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 3.0e-73 279.3 247 65.2
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 3.9e-73 278.9 247 65.2
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 3.9e-73 278.9 244 65.2
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 1.1e-72 277.3 239 65.7
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 1.1e-72 277.3 237 64.6
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.1e-72 277.3 237 64.6
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.5e-72 276.9 235 65.1
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 2.0e-72 276.6 235 64.7
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 2.0e-72 276.6 204 70.1
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 2.5e-72 276.2 248 62.1
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 3.3e-72 275.8 237 63.7
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 4.3e-72 275.4 244 63.5
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 9.7e-72 274.2 256 60.2
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 1.7e-71 273.5 242 62.8
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 1.1e-70 270.8 247 59.1
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 2.4e-70 269.6 208 68.8
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.5e-69 266.9 236 61.9
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 2.6e-69 266.2 192 74.5
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 4.5e-69 265.4 232 64.2
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 4.5e-69 265.4 254 61.8
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 7.7e-69 264.6 219 65.3
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 7.7e-69 264.6 219 65.3
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 1.7e-68 263.5 192 71.9
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 2.9e-68 262.7 241 61.0
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 5.0e-68 261.9 208 66.8
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 6.5e-68 261.5 221 64.3
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 8.5e-68 261.2 242 61.2
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 1.1e-67 260.8 236 60.2
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 1.9e-67 260.0 201 66.7
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 2.5e-67 259.6 262 58.8
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 5.5e-67 258.5 234 59.4
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 7.2e-67 258.1 200 65.5
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 9.4e-67 257.7 237 60.8
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 1.2e-66 257.3 258 60.5
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 1.6e-66 256.9 200 65.0
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 6.1e-66 255.0 247 59.1
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 1.0e-65 254.2 234 60.7
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 1.8e-65 253.4 237 61.2
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 1.1e-64 250.8 237 59.9
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 1.1e-64 250.8 227 63.0
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.1e-64 250.8 233 60.5
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 4.4e-64 248.8 224 64.7
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 9.7e-64 247.7 237 60.8
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 8.2e-63 244.6 214 64.5
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 1.1e-62 244.2 242 59.1
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.4e-62 243.8 210 64.8
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 2.4e-62 243.0 214 61.7
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 4.1e-62 242.3 198 65.2
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 4.1e-62 242.3 225 60.0
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 5.3e-62 241.9 257 58.4
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 1.5e-61 240.4 210 63.8
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 2.0e-61 240.0 242 58.7
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 2.0e-61 240.0 244 54.9
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 5.9e-61 238.4 255 53.3
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 3.8e-60 235.7 241 56.0
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 8.5e-60 234.6 262 54.2
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 2.5e-59 233.0 262 55.0
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 4.2e-59 232.3 242 57.0
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 4.2e-59 232.3 242 57.0
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 7.2e-59 231.5 243 53.1
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 9.4e-59 231.1 262 56.1
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 3.6e-58 229.2 219 59.8
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 3.6e-58 229.2 186 62.9
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 3.6e-58 229.2 214 63.1
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 3.6e-58 229.2 238 56.3
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 4.7e-58 228.8 172 70.3
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 4.7e-58 228.8 197 62.4
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 8.0e-58 228.0 225 58.2
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 1.4e-57 227.3 231 56.7
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 2.3e-57 226.5 197 61.4
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 2.3e-57 226.5 210 58.1
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 6.7e-57 224.9 230 55.7
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.1e-56 224.2 229 55.5
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 3.3e-56 222.6 160 71.9
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 3.3e-56 222.6 235 55.7
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 5.7e-56 221.9 160 70.6
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 5.7e-56 221.9 160 70.6
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 2.9e-52 209.5 144 72.9
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 3.8e-52 209.1 205 58.5
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 3.8e-52 209.1 233 54.1
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 7.2e-51 204.9 200 57.0
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 3.6e-50 202.6 216 55.1
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 2.8e-47 193.0 126 77.0
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 3.5e-45 186.0 187 55.1
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 1.0e-44 184.5 182 59.9
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 2.2e-44 183.3 197 55.8
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.9e-43 180.3 235 46.4
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 2.5e-43 179.9 245 48.2
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 2.7e-42 176.4 191 52.9
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 3.6e-42 176.0 202 51.5
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 3.1e-38 162.9 115 73.9
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 5.4e-38 162.2 225 48.0
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 1.6e-37 160.6 242 43.8
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 1.7e-36 157.1 149 53.0
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.1e-35 154.5 196 48.0
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.6e-34 150.6 190 51.1
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 6.1e-34 148.7 208 45.7
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 3.0e-33 146.4 94 77.7
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 9.8e-32 141.4 202 42.6
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 9.2e-30 134.8 93 73.1
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 8.6e-28 128.3 111 60.4
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.5e-24 117.5 93 62.4
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 3.2e-22 109.8 102 61.8
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 9.2e-22 108.2 136 49.3
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 1.6e-21 107.5 99 55.6
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 3.1e-17 93.2 102 50.0
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 4.9e-15 85.9 150 43.3
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 1.9e-14 84.0 107 49.5
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 5.8e-08 62.4 63 57.1
MCO11G868 Micromonas commoda HOM05D004453 ORTHO05D005375 9.9e-08 61.6 180 26.7
BcaC04g20719 Brassica carinata HOM05D004453 ORTHO05D014925 4.1e-06 56.2 86 43.0


User provided reference genes

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