Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.C142H6 Arachis hypogaea HOM05D000290 ORTHO05D023767 4.2e-60 234.6 126 100.0
arahy.Tifrunner.gnm1.ann1.DAY8FD Arachis hypogaea HOM05D000290 ORTHO05D002418 5.8e-49 197.6 107 98.1
Prupe.3G196900 Prunus persica HOM05D000290 ORTHO05D002418 3.6e-43 178.3 107 88.8
PGR083G1030 Punica granatum HOM05D000290 ORTHO05D002418 2.3e-42 175.6 107 86.0
Gohir.A07G169878 Gossypium hirsutum HOM05D000290 ORTHO05D002418 4.0e-42 174.9 107 86.0
Gorai.001G191200 Gossypium raimondii HOM05D000290 ORTHO05D002418 8.9e-42 173.7 107 85.0
Glyma.14G004500 Glycine max HOM05D000290 ORTHO05D002418 1.2e-41 173.3 107 85.0
Manes.12G063300 Manihot esculenta HOM05D000290 ORTHO05D002418 1.2e-41 173.3 107 86.0
Phvul.008G288500 Phaseolus vulgaris HOM05D000290 ORTHO05D002418 1.2e-41 173.3 107 83.2
Glyma.02G308600 Glycine max HOM05D000290 ORTHO05D002418 1.5e-41 172.9 107 85.0
TAR629G1956 Trochodendron aralioides HOM05D000290 ORTHO05D002418 1.5e-41 172.9 107 83.2
CANSAT64G2620 Cannabis sativa HOM05D000290 ORTHO05D002418 2.0e-41 172.6 107 85.0
Actinidia09796 Actinidia chinensis HOM05D000290 ORTHO05D002418 2.6e-41 172.2 107 83.2
MELO3C025944.2 Cucumis melo HOM05D000290 ORTHO05D002418 2.6e-41 172.2 107 84.1
CsaV3_6G009700 Cucumis sativus L. HOM05D000290 ORTHO05D002418 3.4e-41 171.8 107 84.1
VMungo0647G1039 Vigna mungo HOM05D000290 ORTHO05D002418 3.4e-41 171.8 107 82.2
EL10Ac9g22671 Beta vulgaris HOM05D000290 ORTHO05D002418 4.4e-41 171.4 107 83.2
Dinv26599 Davidia involucrata HOM05D000290 ORTHO05D002418 4.4e-41 171.4 107 84.1
Lalb_Chr04g0247111 Lupinus albus HOM05D000290 ORTHO05D002418 4.4e-41 171.4 107 85.0
MD09G1128300 Malus domestica HOM05D000290 ORTHO05D002418 4.4e-41 171.4 107 84.1
Eucgr.H00850 Eucalyptus grandis HOM05D000290 ORTHO05D002418 5.8e-41 171.0 107 84.1
ClCG02G009140 Citrullus lanatus HOM05D000290 ORTHO05D002418 7.5e-41 170.6 107 83.2
vmacro12076 Vaccinium macrocarpon HOM05D000290 ORTHO05D002418 7.5e-41 170.6 107 82.2
Duzib138G1726 Durio zibethinus HOM05D000290 ORTHO05D002418 9.8e-41 170.2 107 83.2
Nn1g07516 Nelumbo nucifera HOM05D000290 ORTHO05D002418 9.8e-41 170.2 107 81.3
Cc05_g01630 Coffea canephora HOM05D000290 ORTHO05D002418 1.3e-40 169.9 107 81.3
Haze_12608 Corylus avellana HOM05D000290 ORTHO05D002418 1.3e-40 169.9 107 84.1
Aa31LG5G18280 Aethionema arabicum HOM05D000290 ORTHO05D002418 1.7e-40 169.5 107 82.2
GSVIVG01030106001 Vitis vinifera HOM05D000290 ORTHO05D002418 2.2e-40 169.1 107 81.3
QL04p067868 Quercus lobata HOM05D000290 ORTHO05D002418 2.9e-40 168.7 106 82.1
GSVIVG01030099001 Vitis vinifera HOM05D000290 ORTHO05D002418 4.9e-40 167.9 107 81.3
Cpa.g.sc211.33 Carica papaya HOM05D000290 ORTHO05D002418 6.4e-40 167.5 107 83.2
Eucgr.H00851 Eucalyptus grandis HOM05D000290 ORTHO05D002418 6.4e-40 167.5 106 83.0
Oeu033691.1 Olea europaea HOM05D000290 ORTHO05D002418 6.4e-40 167.5 104 82.7
Oeu033692.1 Olea europaea HOM05D000290 ORTHO05D002418 6.4e-40 167.5 104 82.7
Thecc.01G196900 Theobroma cacao HOM05D000290 ORTHO05D002418 6.4e-40 167.5 107 83.2
CSS0027298 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D002418 8.3e-40 167.2 107 83.2
CSS0029025 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D002418 8.3e-40 167.2 107 83.2
Peaxi162Scf00802g00035 Petunia axillaris HOM05D000290 ORTHO05D002418 8.3e-40 167.2 107 80.4
HanXRQChr04g0126421 Helianthus annuus HOM05D000290 ORTHO05D002418 1.1e-39 166.8 107 82.2
Nitab4.5_0006992g0060 Nicotiana tabacum HOM05D000290 ORTHO05D002418 1.1e-39 166.8 107 81.3
Sc21g0000580 Simmondsia chinensis HOM05D000290 ORTHO05D002418 1.1e-39 166.8 107 79.4
Lj1C797T9 Lonicera japonica HOM05D000290 ORTHO05D002418 1.4e-39 166.4 107 80.4
Lj6g0018577 Lotus japonicus HOM05D000290 ORTHO05D002418 1.9e-39 166.0 106 80.2
TWI18G0719 Tripterygium wilfordii HOM05D000290 ORTHO05D002418 1.9e-39 166.0 107 81.3
AL3G19060 Arabidopsis lyrata HOM05D000290 ORTHO05D002418 2.4e-39 165.6 107 81.3
CiPaw.03G282400 Carya illinoinensis HOM05D000290 ORTHO05D002418 2.4e-39 165.6 107 81.3
Phvul.007G121568 Phaseolus vulgaris HOM05D000290 ORTHO05D002418 2.4e-39 165.6 106 82.1
Potri.014G168600 Populus trichocarpa HOM05D000290 ORTHO05D002418 2.4e-39 165.6 107 80.4
AT3G07700 Arabidopsis thaliana HOM05D000290 ORTHO05D002418 3.2e-39 165.2 107 81.3
Ciclev10014451m.g Citrus clementina HOM05D000290 ORTHO05D002418 3.2e-39 165.2 107 84.1
Lj8C136T8 Lonicera japonica HOM05D000290 ORTHO05D002418 3.2e-39 165.2 107 80.4
Sabra14G0128700 Salix brachista HOM05D000290 ORTHO05D002418 3.2e-39 165.2 107 80.4
Zm00001eb225060 Zea mays HOM05D000290 ORTHO05D002418 3.2e-39 165.2 107 79.4
A05p40510 Brassica napus HOM05D000290 ORTHO05D002418 4.1e-39 164.9 107 80.4
BolC5t34616H Brassica oleracea HOM05D000290 ORTHO05D002418 4.1e-39 164.9 107 80.4
BraA05t22783Z Brassica rapa HOM05D000290 ORTHO05D002418 4.1e-39 164.9 107 80.4
Glyma.13G007200 Glycine max HOM05D000290 ORTHO05D002418 4.1e-39 164.9 107 82.2
THA.LOC104822435 Tarenaya hassleriana HOM05D000290 ORTHO05D002418 4.1e-39 164.9 107 81.3
Thhalv10020179m.g Eutrema salsugineum HOM05D000290 ORTHO05D002418 5.4e-39 164.5 107 80.4
Solyc07g045420.4 Solanum lycopersicum HOM05D000290 ORTHO05D002418 5.4e-39 164.5 107 81.3
HPP92_021958 Vanilla planifolia HOM05D000290 ORTHO05D002418 7.1e-39 164.1 107 78.5
Ah.01g013960 Amaranthus hybridus HOM05D000290 ORTHO05D002418 1.2e-38 163.3 107 78.5
Sp3g06640 Schrenkiella parvula HOM05D000290 ORTHO05D002418 1.2e-38 163.3 107 79.4
SGA_v2.0_scaffold181G39692 Striga asiatica HOM05D000290 ORTHO05D002418 1.2e-38 163.3 107 79.4
C05p59620 Brassica napus HOM05D000290 ORTHO05D002418 1.6e-38 162.9 107 79.4
CAN.G177.13 Capsicum annuum HOM05D000290 ORTHO05D002418 1.6e-38 162.9 107 80.4
Rhsim06G0177200 Rhododendron simsii HOM05D000290 ORTHO05D002418 1.6e-38 162.9 106 80.2
Sopen07g023960 Solanum pennellii HOM05D000290 ORTHO05D002418 1.6e-38 162.9 107 80.4
Os09g0250700 Oryza sativa ssp. japonica HOM05D000290 ORTHO05D002418 2.1e-38 162.5 107 76.6
MSTRG.6634 Avicennia marina HOM05D000290 ORTHO05D002418 2.7e-38 162.2 107 78.5
Carub.0003s0728 Capsella rubella HOM05D000290 ORTHO05D002418 2.7e-38 162.2 107 80.4
FvH4_6g40570 Fragaria vesca HOM05D000290 ORTHO05D002418 3.5e-38 161.8 107 79.4
FAN14G4964 Fragaria x ananassa HOM05D000290 ORTHO05D002418 3.5e-38 161.8 107 79.4
CARHR082410 Cardamine hirsuta HOM05D000290 ORTHO05D002418 7.8e-38 160.6 107 78.5
ECA236G3612 Erigeron canadensis HOM05D000290 ORTHO05D002418 7.8e-38 160.6 106 78.3
FAN02G3426 Fragaria x ananassa HOM05D000290 ORTHO05D002418 1.0e-37 160.2 107 78.5
FAN09G0368 Fragaria x ananassa HOM05D000290 ORTHO05D002418 1.0e-37 160.2 107 78.5
RcHm_v2.0_Chr2g0155831 Rosa chinensis HOM05D000290 ORTHO05D002418 2.3e-37 159.1 107 78.5
Atru.chr6.3403 Acer truncatum HOM05D000290 ORTHO05D002418 3.0e-37 158.7 106 80.2
Migut.M00050 Erythranthe guttata HOM05D000290 ORTHO05D002418 3.9e-37 158.3 107 77.6
FAN05G3879 Fragaria x ananassa HOM05D000290 ORTHO05D002418 5.1e-37 157.9 107 77.6
Medtr3g082750 Medicago truncatula HOM05D000290 ORTHO05D002418 1.5e-36 156.4 106 76.4
PSO541G1439 Papaver somniferum HOM05D000290 ORTHO05D002418 1.5e-36 156.4 108 75.9
PSO675G0113 Papaver somniferum HOM05D000290 ORTHO05D002418 1.5e-36 156.4 108 75.9
Hund08300 Selenicereus undatus HOM05D000290 ORTHO05D023767 1.5e-36 156.4 107 76.6
CDE02G4109 Ceratophyllum demersum HOM05D000290 ORTHO05D002418 3.3e-36 155.2 107 76.6
Aqoxy4G02289 Aquilegia oxysepala HOM05D004103 ORTHO05D005242 9.5e-36 153.7 106 77.4
AUR62029122 Chenopodium quinoa HOM05D000290 ORTHO05D002418 6.2e-35 151.0 114 73.7
MSTRG.12250 Avicennia marina HOM05D000290 ORTHO05D002418 8.1e-35 150.6 107 72.9
SalBow7G4299 Salvia bowleyana HOM05D000290 ORTHO05D002418 1.1e-34 150.2 107 73.8
Ciclev10014453m.g Citrus clementina HOM05D000290 ORTHO05D002418 3.1e-34 148.7 107 75.7
Psat5g104600 Pisum sativum HOM05D000290 ORTHO05D002418 5.2e-34 147.9 98 78.6
Haze_12619 Corylus avellana HOM05D000290 ORTHO05D002418 8.9e-34 147.1 92 82.6
unitig_85.g27400 Utricularia gibba HOM05D000290 ORTHO05D002418 1.3e-32 143.3 107 69.2
SGA_v2.0_scaffold49G18404 Striga asiatica HOM05D000290 ORTHO05D002418 6.4e-32 141.0 107 68.2
Duzib133G1276 Durio zibethinus HOM05D000290 ORTHO05D002418 1.4e-31 139.8 106 71.7
MBI15_g03504_MAGBIO Magnolia biondii HOM05D000290 ORTHO05D002418 3.5e-30 135.2 84 82.1
AUR62014999 Chenopodium quinoa HOM05D000290 ORTHO05D002418 7.8e-30 134.0 83 83.1
SEGI_17551 Sequoiadendron giganteum HOM05D000290 ORTHO05D023767 1.0e-29 133.7 108 63.9
TPR.G22475 Trifolium pratense HOM05D000290 ORTHO05D002418 1.3e-29 133.3 82 85.4
Actinidia35202 Actinidia chinensis HOM05D000290 ORTHO05D002418 1.7e-29 132.9 99 67.7
Lsat_1_v5_gn_7_96461 Lactuca sativa HOM05D000290 ORTHO05D002418 6.6e-29 131.0 89 77.5
Cfa014217 Carpinus fangiana HOM05D000290 ORTHO05D002418 3.3e-28 128.6 84 78.6
Eucgr.L01057 Eucalyptus grandis HOM05D000290 ORTHO05D002418 4.3e-28 128.3 82 80.5
Migut.H01283 Erythranthe guttata HOM05D000290 ORTHO05D023767 7.3e-28 127.5 131 56.5
Atru.chr6.3402 Acer truncatum HOM05D000290 ORTHO05D002418 1.2e-27 126.7 99 72.7
Sed0004350 Sechium edule HOM05D000290 ORTHO05D002418 1.1e-26 123.6 84 73.8
Ca_16344_v3 Cicer arietinum L. HOM05D000290 ORTHO05D002418 2.6e-25 119.0 75 82.7
AagrBONN_evm.TU.Sc2ySwM_228.4416 Anthoceros agrestis HOM05D000290 ORTHO05D002418 1.3e-24 116.7 107 58.9
DCAR_021089 Daucus carota HOM05D000879 ORTHO05D002418 2.9e-24 115.5 73 82.2
Lj1A797T66 Lonicera japonica HOM05D000290 ORTHO05D002418 1.2e-22 110.2 107 59.8
Pp3c15_9220 Physcomitrium patens HOM05D000290 ORTHO05D002418 1.6e-22 109.8 108 52.8
Mapoly0186s0017 Marchantia polymorpha HOM05D000290 ORTHO05D002418 1.9e-20 102.8 108 52.8
SMO358G0591 Selaginella moellendorffii HOM05D000290 ORTHO05D002418 1.8e-18 96.3 86 60.5
BcaC05g29564 Brassica carinata HOM05D000290 ORTHO05D002418 2.0e-17 92.8 69 71.0
Cpa.g.sc211.32 Carica papaya HOM05D000290 ORTHO05D002418 3.4e-17 92.0 86 57.0
EL10Ac9g22670 Beta vulgaris HOM05D000290 ORTHO05D023767 1.3e-16 90.1 110 50.0
Cre08.g369150 Chlamydomonas reinhardtii HOM05D000290 ORTHO05D002418 2.7e-14 82.4 101 50.5
Lsat_1_v5_gn_9_103561 Lactuca sativa HOM05D000290 ORTHO05D002418 1.0e-13 80.5 53 75.5
Dinv26598 Davidia involucrata HOM05D000290 ORTHO05D002418 3.6e-11 72.0 44 79.5
CBR_g20993 Chara braunii HOM05D000290 ORTHO05D002418 4.5e-09 65.1 127 35.4
SMO361G0768 Selaginella moellendorffii HOM05D000290 ORTHO05D002418 1.3e-08 63.5 113 35.4
Pp3c9_4350 Physcomitrium patens HOM05D000290 ORTHO05D002418 2.9e-08 62.4 107 36.4
Pp3c15_3930 Physcomitrium patens HOM05D000290 ORTHO05D002418 3.8e-08 62.0 96 39.6
Mapoly0001s0423 Marchantia polymorpha HOM05D000290 ORTHO05D002418 6.4e-08 61.2 96 38.5
Cre13.g570350 Chlamydomonas reinhardtii HOM05D000290 ORTHO05D002418 1.4e-07 60.1 95 41.1
Gohir.D07G170800 Gossypium hirsutum HOM05D000290 ORTHO05D002418 1.4e-07 60.1 36 80.6
CSS0019128 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D002418 2.4e-07 59.3 96 38.5
MSTRG.3805 Avicennia marina HOM05D000290 ORTHO05D002418 7.1e-07 57.8 96 37.5
AagrBONN_evm.TU.Sc2ySwM_344.1524 Anthoceros agrestis HOM05D000290 ORTHO05D002418 9.3e-07 57.4 109 33.9
Psat7g051880 Pisum sativum HOM05D000290 ORTHO05D002418 1.2e-06 57.0 96 35.4
COL.COLO4_11032 Corchorus olitorius HOM05D000290 ORTHO05D002418 1.6e-06 56.6 96 37.5
Duzib147G0442 Durio zibethinus HOM05D000290 ORTHO05D002418 1.6e-06 56.6 110 36.4
VMungo0251G3264 Vigna mungo HOM05D000290 ORTHO05D002418 1.6e-06 56.6 113 32.7
Lj4g0021892 Lotus japonicus HOM05D000290 ORTHO05D002418 2.1e-06 56.2 96 35.4
Os02g0575500 Oryza sativa ssp. japonica HOM05D000290 ORTHO05D002418 2.1e-06 56.2 98 36.7
AUR62016263 Chenopodium quinoa HOM05D000290 ORTHO05D002418 2.7e-06 55.8 96 36.5
FvH4_1g22080 Fragaria vesca HOM05D000290 ORTHO05D002418 2.7e-06 55.8 96 36.5
FAN28G0415 Fragaria x ananassa HOM05D000290 ORTHO05D002418 2.7e-06 55.8 96 36.5
Lalb_Chr12g0203571 Lupinus albus HOM05D000290 ORTHO05D002418 2.7e-06 55.8 96 34.4
TWI77G0161 Tripterygium wilfordii HOM05D000290 ORTHO05D002418 2.7e-06 55.8 96 36.5
TAR628G0248 Trochodendron aralioides HOM05D000290 ORTHO05D002418 2.7e-06 55.8 96 36.5
Atru.chr4.398 Acer truncatum HOM05D000290 ORTHO05D002418 3.5e-06 55.5 96 36.5
FAN19G1951 Fragaria x ananassa HOM05D000290 ORTHO05D002418 3.5e-06 55.5 96 36.5
Manes.12G141200 Manihot esculenta HOM05D000290 ORTHO05D002418 3.5e-06 55.5 98 40.8
RcHm_v2.0_Chr2g0116161 Rosa chinensis HOM05D000290 ORTHO05D002418 3.5e-06 55.5 96 36.5
Zm00001eb244840 Zea mays HOM05D000290 ORTHO05D002418 3.5e-06 55.5 103 38.8
ATR0564G333 Amborella trichopoda HOM05D000290 ORTHO05D002418 4.6e-06 55.1 96 37.5
Dinv19505 Davidia involucrata HOM05D000290 ORTHO05D002418 4.6e-06 55.1 96 37.5
Glyma.04G220200 Glycine max HOM05D000290 ORTHO05D002418 4.6e-06 55.1 96 36.5
Glyma.05G183100 Glycine max HOM05D000290 ORTHO05D002418 4.6e-06 55.1 96 34.4
Glyma.06G145700 Glycine max HOM05D000290 ORTHO05D002418 4.6e-06 55.1 96 36.5
Glyma.08G140900 Glycine max HOM05D000290 ORTHO05D002418 4.6e-06 55.1 96 34.4
MD01G1017900 Malus domestica HOM05D000290 ORTHO05D002418 4.6e-06 55.1 96 35.4
Phvul.009G140432 Phaseolus vulgaris HOM05D000290 ORTHO05D002418 4.6e-06 55.1 96 36.5
Thecc.01G110800 Theobroma cacao HOM05D000290 ORTHO05D002418 4.6e-06 55.1 96 36.5
GSVIVG01022210001 Vitis vinifera HOM05D000290 ORTHO05D002418 4.6e-06 55.1 96 36.5
CiPaw.04G092900 Carya illinoinensis HOM05D000290 ORTHO05D002418 6.0e-06 54.7 96 35.4
Ciclev10024947m.g Citrus clementina HOM05D000290 ORTHO05D002418 6.0e-06 54.7 96 37.5
Hund03547 Selenicereus undatus HOM05D000290 ORTHO05D002418 6.0e-06 54.7 96 35.4
Aqoxy6G00498 Aquilegia oxysepala HOM05D000290 ORTHO05D002418 7.9e-06 54.3 96 36.5
EL10Ac6g14732 Beta vulgaris HOM05D000290 ORTHO05D002418 7.9e-06 54.3 96 35.4
CANSAT01G1322 Cannabis sativa HOM05D000290 ORTHO05D002418 7.9e-06 54.3 96 37.5
AUR62003319 Chenopodium quinoa HOM05D000290 ORTHO05D002418 7.9e-06 54.3 96 36.5
Medtr8g091710 Medicago truncatula HOM05D000290 ORTHO05D002418 7.9e-06 54.3 96 35.4
TWI74G1368 Tripterygium wilfordii HOM05D000290 ORTHO05D002418 7.9e-06 54.3 96 36.5


User provided reference genes

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