Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.B5VTGG Arachis hypogaea HOM05D006602 ORTHO05D007927 1.2e-290 1002.7 605 100.0
Glyma.10G005000 Glycine max HOM05D006602 ORTHO05D007927 1.5e-131 474.2 586 52.2
VMungo0720G1075 Vigna mungo HOM05D006602 ORTHO05D007927 7.6e-131 471.9 584 51.2
Lj6g0020892 Lotus japonicus HOM05D006602 ORTHO05D007927 4.5e-123 446.0 611 47.0
Psat6g105120 Pisum sativum HOM05D006602 ORTHO05D007927 4.5e-123 446.0 662 46.8
TPR.G25155 Trifolium pratense HOM05D006602 ORTHO05D007927 8.4e-122 441.8 710 43.9
Phvul.007G275200 Phaseolus vulgaris HOM05D006602 ORTHO05D007927 3.2e-121 439.9 583 49.1
Lalb_Chr01g0021011 Lupinus albus HOM05D006602 ORTHO05D007927 6.2e-117 425.6 594 53.0
Medtr1g041735 Medicago truncatula HOM05D006602 ORTHO05D007927 1.5e-110 404.4 705 41.4
Ca_12140_v3 Cicer arietinum L. HOM05D006602 ORTHO05D007927 1.3e-82 311.6 563 41.0
Ca_12142_v3 Cicer arietinum L. HOM05D006602 ORTHO05D007927 1.3e-82 311.6 563 41.0
Haze_11431 Corylus avellana HOM05D006602 ORTHO05D003510 7.0e-76 289.3 582 38.7
Dinv27089 Davidia involucrata HOM05D006602 ORTHO05D007927 1.6e-72 278.1 584 37.5
CiPaw.01G180800 Carya illinoinensis HOM05D006602 ORTHO05D007927 1.1e-68 265.4 597 38.7
Potri.010G068400 Populus trichocarpa HOM05D006602 ORTHO05D007927 2.3e-66 257.7 580 37.9
Cfa014754 Carpinus fangiana HOM05D006602 ORTHO05D007927 3.8e-66 256.9 575 37.6
QL06p020003 Quercus lobata HOM05D006602 ORTHO05D007927 3.8e-66 256.9 626 33.9
Prupe.1G045200 Prunus persica HOM05D006602 ORTHO05D007927 2.5e-65 254.2 582 38.5
MD13G1218500 Malus domestica HOM05D006602 ORTHO05D007927 2.8e-64 250.8 585 37.4
TAR636G1896 Trochodendron aralioides HOM05D006602 ORTHO05D007927 1.2e-62 245.4 584 37.2
Sabra10G0038600 Salix brachista HOM05D006602 ORTHO05D007927 2.6e-62 244.2 584 36.3
Cpa.g.sc44.23 Carica papaya HOM05D006602 ORTHO05D007927 1.7e-61 241.5 584 37.0
Thecc.04G260100 Theobroma cacao HOM05D006602 ORTHO05D007927 9.2e-60 235.7 594 34.7
RcHm_v2.0_Chr4g0394621 Rosa chinensis HOM05D006602 ORTHO05D007927 2.9e-58 230.7 561 34.8
CSS0038498 Camellia sinensis var. sinensis HOM05D006602 ORTHO05D007927 3.8e-58 230.3 578 36.7
FAN17G1576 Fragaria x ananassa HOM05D006602 ORTHO05D007927 1.5e-57 228.4 568 33.5
Duzib151G0058 Durio zibethinus HOM05D006602 ORTHO05D007927 5.6e-57 226.5 590 32.5
Sabra08G0129700 Salix brachista HOM05D006602 ORTHO05D007927 5.6e-57 226.5 577 33.6
TWI09G0121 Tripterygium wilfordii HOM05D006602 ORTHO05D007927 7.3e-57 226.1 584 35.3
TWI09G1114 Tripterygium wilfordii HOM05D006602 ORTHO05D007927 7.3e-57 226.1 584 35.3
Gohir.A10G109300 Gossypium hirsutum HOM05D006602 ORTHO05D007927 9.5e-57 225.7 590 32.5
Nn2g12538 Nelumbo nucifera HOM05D006602 ORTHO05D007927 1.2e-56 225.3 581 36.1
FAN22G1758 Fragaria x ananassa HOM05D006602 ORTHO05D007927 3.6e-56 223.8 556 33.1
Manes.03G161700 Manihot esculenta HOM05D006602 ORTHO05D007927 6.1e-56 223.0 599 33.7
Lj6A624G54 Lonicera japonica HOM05D006602 ORTHO05D007927 3.4e-54 217.2 604 34.3
COL.COLO4_15932 Corchorus olitorius HOM05D006602 ORTHO05D007927 9.8e-54 215.7 594 33.7
Ciclev10004248m.g Citrus clementina HOM05D006602 ORTHO05D007927 8.3e-53 212.6 597 37.4
Atru.chr4.1980 Acer truncatum HOM05D006602 ORTHO05D007927 1.1e-52 212.2 662 33.1
Gohir.D10G157900 Gossypium hirsutum HOM05D006602 ORTHO05D007927 2.7e-51 207.6 594 31.1
Eucgr.H02994 Eucalyptus grandis HOM05D006602 ORTHO05D007927 3.5e-51 207.2 593 32.9
FAN12G1920 Fragaria x ananassa HOM05D006602 ORTHO05D007927 3.5e-51 207.2 553 33.1
AUR62002172 Chenopodium quinoa HOM05D006602 ORTHO05D007927 3.0e-50 204.1 331 46.8
Rhsim02G0042400 Rhododendron simsii HOM05D006602 ORTHO05D007927 3.0e-50 204.1 579 34.7
Gorai.011G177400 Gossypium raimondii HOM05D006602 ORTHO05D007927 5.0e-50 203.4 594 31.3
Hund11918 Selenicereus undatus HOM05D006602 ORTHO05D007927 5.0e-50 203.4 590 35.6
AUR62015537 Chenopodium quinoa HOM05D006602 ORTHO05D007927 1.1e-49 202.2 333 46.2
Nitab4.5_0001425g0110 Nicotiana tabacum HOM05D006602 ORTHO05D007927 4.3e-49 200.3 585 38.8
Nitab4.5_0006936g0050 Nicotiana tabacum HOM05D006602 ORTHO05D007927 7.3e-49 199.5 583 38.1
FvH4_4g04160 Fragaria vesca HOM05D006602 ORTHO05D007927 9.5e-49 199.1 555 31.9
EL10Ac3g04970 Beta vulgaris HOM05D006602 ORTHO05D007927 1.2e-48 198.7 300 47.0
vmacro15464 Vaccinium macrocarpon HOM05D006602 ORTHO05D007927 1.2e-48 198.7 593 34.1
GSVIVG01027871001 Vitis vinifera HOM05D006602 ORTHO05D007927 2.1e-48 198.0 568 32.6
MBI10_g19236_MAGBIO Magnolia biondii HOM05D006602 ORTHO05D007927 2.3e-47 194.5 585 35.0
Sc13g0005920 Simmondsia chinensis HOM05D006602 ORTHO05D007927 1.5e-46 191.8 579 32.1
ClCG06G007140 Citrullus lanatus HOM05D006602 ORTHO05D007927 2.0e-46 191.4 580 33.6
CANSAT78G1730 Cannabis sativa HOM05D006602 ORTHO05D007927 5.8e-46 189.9 331 43.2
PGR004G1839 Punica granatum HOM05D006602 ORTHO05D007927 8.3e-45 186.0 309 42.4
Cc03_g05910 Coffea canephora HOM05D006602 ORTHO05D007927 3.2e-44 184.1 246 43.5
THA.LOC104801076 Tarenaya hassleriana HOM05D006602 ORTHO05D007927 5.4e-44 183.3 583 31.7
Peaxi162Scf00602g00056 Petunia axillaris HOM05D006602 ORTHO05D007927 9.2e-44 182.6 629 30.4
DCAR_002305 Daucus carota HOM05D006602 ORTHO05D007927 4.6e-43 180.3 604 29.8
SalBow3G2492 Salvia bowleyana HOM05D006602 ORTHO05D007927 4.6e-43 180.3 595 31.8
Solyc09g090420.4 Solanum lycopersicum HOM05D006602 ORTHO05D007927 4.6e-43 180.3 250 42.8
Sopen09g033330 Solanum pennellii HOM05D006602 ORTHO05D007927 6.0e-43 179.9 250 42.8
MSTRG.9876 Avicennia marina HOM05D006602 ORTHO05D007927 3.0e-42 177.6 576 29.9
CsaV3_2G012590 Cucumis sativus L. HOM05D006602 ORTHO05D007927 7.3e-41 172.9 304 40.1
Sed0025551 Sechium edule HOM05D006602 ORTHO05D007927 1.6e-40 171.8 572 30.8
Migut.G00495 Erythranthe guttata HOM05D006602 ORTHO05D007927 1.8e-39 168.3 596 31.4
Oeu002938.1 Olea europaea HOM05D006602 ORTHO05D007927 1.2e-38 165.6 605 29.8
SGA_v2.0_scaffold67G22733 Striga asiatica HOM05D006602 ORTHO05D007927 2.0e-38 164.9 628 30.1
Oeu002939.1 Olea europaea HOM05D006602 ORTHO05D007927 5.8e-38 163.3 577 30.7
Ah.04g155430 Amaranthus hybridus HOM05D006602 ORTHO05D007927 1.4e-36 158.7 331 36.6
ECA248G0430 Erigeron canadensis HOM05D006602 ORTHO05D007927 2.4e-36 157.9 323 38.7
AL4G29110 Arabidopsis lyrata HOM05D006602 ORTHO05D007927 6.0e-35 153.3 514 29.4
HanXRQChr04g0115381 Helianthus annuus HOM05D006602 ORTHO05D007927 7.8e-35 152.9 588 30.1
TAR365G0143 Trochodendron aralioides HOM05D006602 ORTHO05D007927 1.3e-34 152.1 158 51.9
MELO3C023018.2 Cucumis melo HOM05D006602 ORTHO05D007927 1.7e-34 151.8 623 33.7
CARHR127450 Cardamine hirsuta HOM05D006602 ORTHO05D007927 3.9e-34 150.6 304 35.2
Aqoxy5G00174 Aquilegia oxysepala HOM05D006602 ORTHO05D007927 1.9e-33 148.3 654 29.7
unitig_32.g10852 Utricularia gibba HOM05D006602 ORTHO05D007927 9.5e-33 146.0 578 27.3
HPP92_005119 Vanilla planifolia HOM05D006602 ORTHO05D007927 6.2e-32 143.3 580 32.2
Os03g0138100 Oryza sativa ssp. japonica HOM05D006602 ORTHO05D007927 8.1e-32 142.9 330 33.9
BolC3t14573H Brassica oleracea HOM05D006602 ORTHO05D007927 1.1e-31 142.5 175 46.9
Sp4g15780 Schrenkiella parvula HOM05D006602 ORTHO05D007927 1.8e-31 141.7 340 32.9
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 2.0e-30 138.3 311 37.6
BraA03t11135Z Brassica rapa HOM05D006602 ORTHO05D007927 4.4e-30 137.1 334 35.6
A03p18750 Brassica napus HOM05D006602 ORTHO05D007927 1.3e-29 135.6 334 35.3
Carub.0004s1507 Capsella rubella HOM05D006602 ORTHO05D007927 1.3e-29 135.6 581 27.9
ATR0736G103 Amborella trichopoda HOM05D006602 ORTHO05D007927 2.9e-29 134.4 590 27.8
Aa31LG5G3850 Aethionema arabicum HOM05D006602 ORTHO05D007927 4.9e-29 133.7 326 34.4
Thhalv10016212m.g Eutrema salsugineum HOM05D006602 ORTHO05D007927 6.4e-29 133.3 331 32.6
C03p21910 Brassica napus HOM05D006602 ORTHO05D007927 1.1e-28 132.5 334 35.0
PSO423G0061 Papaver somniferum HOM05D006602 ORTHO05D007927 2.4e-28 131.3 181 44.2
CDE02G3785 Ceratophyllum demersum HOM05D006602 ORTHO05D007927 4.1e-28 130.6 584 26.7
Hma1.2p1_0385F.1_g141200 Hydrangea macrophylla HOM05D006602 ORTHO05D007927 5.4e-28 130.2 99 62.6
SEGI_13358 Sequoiadendron giganteum HOM05D006602 ORTHO05D007927 3.9e-26 124.0 604 32.1
SHI00706 Sapria himalayana HOM05D006602 ORTHO05D007927 8.7e-26 122.9 611 25.4
Lsat_1_v5_gn_1_75121 Lactuca sativa HOM05D006602 ORTHO05D007927 2.5e-25 121.3 583 27.1
AT2G33435 Arabidopsis thaliana HOM05D006602 ORTHO05D007927 5.6e-25 120.2 545 27.7
Mapoly0007s0229 Marchantia polymorpha HOM05D006602 ORTHO05D007927 3.4e-22 110.9 145 43.4
Pp3c14_4860 Physcomitrium patens HOM05D006602 ORTHO05D007927 1.3e-21 109.0 116 44.8
Zm00001eb402770 Zea mays HOM05D006602 ORTHO05D007927 3.8e-21 107.5 608 27.6
PSO079G0005 Papaver somniferum HOM05D006602 ORTHO05D007927 6.4e-21 106.7 257 36.2
AagrBONN_evm.TU.Sc2ySwM_344.2542 Anthoceros agrestis HOM05D006602 ORTHO05D007927 1.3e-18 99.0 251 29.9
CBR_g39255 Chara braunii HOM05D001563 ORTHO05D007927 7.3e-17 93.2 99 44.4
Actinidia39917 Actinidia chinensis HOM05D006656 ORTHO05D008208 2.6e-14 84.7 59 64.4
Actinidia27205 Actinidia chinensis HOM05D006602 ORTHO05D007927 3.8e-13 80.9 59 59.3
MCO09G845 Micromonas commoda HOM05D001563 ORTHO05D001956 3.5e-11 74.3 102 38.2
Cfa022399 Carpinus fangiana HOM05D001563 ORTHO05D121841 1.8e-10 72.0 183 30.1
CBR_g28575 Chara braunii HOM05D001563 ORTHO05D001956 3.9e-10 70.9 178 28.7
Pp3c17_14650 Physcomitrium patens HOM05D001563 ORTHO05D001956 6.7e-10 70.1 163 28.2
MCO14G453 Micromonas commoda HOM05D001563 ORTHO05D007927 7.4e-09 66.6 92 40.2
Cre02.g093975 Chlamydomonas reinhardtii HOM05D001563 ORTHO05D007927 1.3e-08 65.9 94 36.2
Cre09.g391949 Chlamydomonas reinhardtii HOM05D001563 ORTHO05D001956 1.6e-08 65.5 96 32.3
PRCOL_00004510 Prasinoderma coloniale HOM05D001563 ORTHO05D001956 1.6e-08 65.5 100 35.0
CBR_g28571 Chara braunii HOM05D001563 ORTHO05D001956 2.1e-08 65.1 91 35.2
SMO201G0011 Selaginella moellendorffii HOM05D001563 ORTHO05D001956 2.1e-08 65.1 120 31.7
BcaB04g20291 Brassica carinata HOM05D001563 ORTHO05D001956 2.8e-08 64.7 164 28.0
HanXRQChr10g0280151 Helianthus annuus HOM05D001563 ORTHO05D001956 3.7e-08 64.3 92 33.7
TAR624G0856 Trochodendron aralioides HOM05D001563 ORTHO05D001956 3.7e-08 64.3 96 33.3
ATR0680G241 Amborella trichopoda HOM05D001563 ORTHO05D001956 4.8e-08 63.9 171 27.5
CBR_g28574 Chara braunii HOM05D000409 ORTHO05D001956 6.2e-08 63.5 91 34.1
AUR62014796 Chenopodium quinoa HOM05D001563 ORTHO05D001956 8.1e-08 63.2 126 27.0
ECA232G2130 Erigeron canadensis HOM05D001563 ORTHO05D001956 8.1e-08 63.2 96 33.3
Rhsim02G0127600 Rhododendron simsii HOM05D001563 ORTHO05D001956 8.1e-08 63.2 91 34.1
Peaxi162Scf00515g00224 Petunia axillaris HOM05D001563 ORTHO05D001956 1.1e-07 62.8 91 35.2
SEGI_35596 Sequoiadendron giganteum HOM05D001563 ORTHO05D001956 1.1e-07 62.8 92 33.7
MSTRG.8796 Avicennia marina HOM05D001563 ORTHO05D001956 1.4e-07 62.4 98 34.7
AUR62016983 Chenopodium quinoa HOM05D001563 ORTHO05D001956 1.4e-07 62.4 126 27.0
Hma1.2p1_0881F.1_g231990 Hydrangea macrophylla HOM05D001563 ORTHO05D001956 1.4e-07 62.4 91 33.0
Pp3c6_9210 Physcomitrium patens HOM05D001563 ORTHO05D001956 1.4e-07 62.4 164 26.8
EL10Ac8g20355 Beta vulgaris HOM05D001563 ORTHO05D001956 1.8e-07 62.0 170 25.9
Lj6g0012533 Lotus japonicus HOM05D001563 ORTHO05D001956 1.8e-07 62.0 164 26.2
EL10Ac6g14918 Beta vulgaris HOM05D001563 ORTHO05D001956 3.1e-07 61.2 98 33.7
Potri.011G050400 Populus trichocarpa HOM05D001563 ORTHO05D001956 3.1e-07 61.2 91 33.0
TAR627G0554 Trochodendron aralioides HOM05D001563 ORTHO05D001956 3.1e-07 61.2 91 33.0
TAR365G0802 Trochodendron aralioides HOM05D006602 ORTHO05D007927 4.0e-07 60.8 113 36.3
HanXRQChr11g0324861 Helianthus annuus HOM05D001563 ORTHO05D001956 5.3e-07 60.5 98 34.7
Aa31LG6G13490 Aethionema arabicum HOM05D001563 ORTHO05D001956 6.9e-07 60.1 98 33.7
AL7G14320 Arabidopsis lyrata HOM05D001563 ORTHO05D001956 1.2e-06 59.3 91 33.0
AT4G36690 Arabidopsis thaliana HOM05D001563 ORTHO05D001956 1.2e-06 59.3 91 33.0
Carub.0007s0363 Capsella rubella HOM05D001563 ORTHO05D001956 1.2e-06 59.3 91 33.0
CARHR245030 Cardamine hirsuta HOM05D001563 ORTHO05D001956 1.2e-06 59.3 91 33.0
Thhalv10024786m.g Eutrema salsugineum HOM05D001563 ORTHO05D001956 1.2e-06 59.3 91 33.0
MCO06G064 Micromonas commoda HOM05D001563 ORTHO05D007927 1.2e-06 59.3 96 35.4
Sp7g34350 Schrenkiella parvula HOM05D001563 ORTHO05D001956 1.2e-06 59.3 91 33.0
THA.LOC104807441 Tarenaya hassleriana HOM05D001563 ORTHO05D001956 1.2e-06 59.3 98 33.7
Thhalv10022618m.g Eutrema salsugineum HOM05D001563 ORTHO05D001956 1.5e-06 58.9 91 33.0
BcaB03g12376 Brassica carinata HOM05D001563 ORTHO05D001956 2.0e-06 58.5 91 33.0
BcaC01g00448 Brassica carinata HOM05D001563 ORTHO05D001956 2.6e-06 58.2 91 33.0
A08p22350 Brassica napus HOM05D001563 ORTHO05D001956 2.6e-06 58.2 91 33.0
BraA08t34191Z Brassica rapa HOM05D001563 ORTHO05D001956 2.6e-06 58.2 91 33.0
Aa31LG8G15530 Aethionema arabicum HOM05D001563 ORTHO05D001956 3.4e-06 57.8 91 33.0
C03p79960 Brassica napus HOM05D001563 ORTHO05D001956 3.4e-06 57.8 91 33.0
BolC3t20248H Brassica oleracea HOM05D001563 ORTHO05D001956 3.4e-06 57.8 91 33.0
BcaB07g31657 Brassica carinata HOM05D001563 ORTHO05D001956 4.5e-06 57.4 91 31.9
A09p11960 Brassica napus HOM05D001563 ORTHO05D001956 4.5e-06 57.4 91 31.9
BraA09t36841Z Brassica rapa HOM05D001563 ORTHO05D001956 4.5e-06 57.4 91 31.9


User provided reference genes

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