Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.B5LWM3 Arachis hypogaea HOM05D003665 ORTHO05D004387 0.0e+00 1095.9 566 100.0
arahy.Tifrunner.gnm1.ann1.567MYZ Arachis hypogaea HOM05D003665 ORTHO05D004387 3.9e-312 1073.9 581 96.2
Ca_19262_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 2.8e-228 795.4 541 79.7
Lj3g0004290 Lotus japonicus HOM05D003665 ORTHO05D004387 2.8e-228 795.4 554 75.6
Phvul.011G079600 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 1.8e-227 792.7 478 83.1
VMungo1127G1530 Vigna mungo HOM05D003665 ORTHO05D004387 4.1e-227 791.6 478 82.4
Medtr4g059000 Medicago truncatula HOM05D003665 ORTHO05D004387 3.2e-224 781.9 470 82.8
Glyma.13G325700 Glycine max HOM05D003665 ORTHO05D004387 2.1e-223 779.2 482 81.1
Phvul.005G134800 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 3.5e-223 778.5 488 79.5
Glyma.12G172200 Glycine max HOM05D003665 ORTHO05D004387 6.7e-222 774.2 487 79.9
Lalb_Chr19g0137231 Lupinus albus HOM05D003665 ORTHO05D004387 8.7e-222 773.9 488 79.5
Manes.11G145800 Manihot esculenta HOM05D003665 ORTHO05D004387 9.7e-221 770.4 479 79.5
Cfa011312 Carpinus fangiana HOM05D003665 ORTHO05D004387 2.8e-220 768.8 477 79.5
MD11G1136600 Malus domestica HOM05D003665 ORTHO05D004387 4.8e-220 768.1 482 79.3
Prupe.6G102100 Prunus persica HOM05D003665 ORTHO05D004387 1.4e-219 766.5 466 80.9
Duzib168G1080 Durio zibethinus HOM05D003665 ORTHO05D004387 3.1e-219 765.4 485 79.2
MD03G1118200 Malus domestica HOM05D003665 ORTHO05D004387 4.1e-219 765.0 472 80.1
Haze_23819 Corylus avellana HOM05D003665 ORTHO05D004387 1.5e-218 763.1 509 75.4
FAN25G3303 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.5e-218 763.1 482 79.0
VMungo1080G0406 Vigna mungo HOM05D003665 ORTHO05D004387 1.5e-218 763.1 488 77.9
CiPaw.13G113600 Carya illinoinensis HOM05D003665 ORTHO05D004387 2.0e-218 762.7 479 78.9
Potri.009G014400 Populus trichocarpa HOM05D003665 ORTHO05D004387 5.9e-218 761.1 480 77.5
FvH4_3g32210 Fragaria vesca HOM05D003665 ORTHO05D004387 7.7e-218 760.8 478 79.1
Thecc.09G341400 Theobroma cacao HOM05D003665 ORTHO05D004387 1.0e-217 760.4 480 78.8
Potri.004G211200 Populus trichocarpa HOM05D003665 ORTHO05D004387 3.8e-217 758.4 480 77.5
FAN16G1206 Fragaria x ananassa HOM05D003665 ORTHO05D004387 6.5e-217 757.7 482 79.0
RcHm_v2.0_Chr5g0058821 Rosa chinensis HOM05D003665 ORTHO05D004387 6.5e-217 757.7 479 78.3
FAN21G1776 Fragaria x ananassa HOM05D003665 ORTHO05D004387 5.5e-216 754.6 479 78.7
FAN11G0686 Fragaria x ananassa HOM05D003665 ORTHO05D004387 9.4e-216 753.8 494 77.1
Medtr2g094470 Medicago truncatula HOM05D003665 ORTHO05D004387 9.4e-216 753.8 482 77.8
Duzib170G0108 Durio zibethinus HOM05D003665 ORTHO05D004387 1.2e-215 753.4 485 77.9
CiPaw.14G080900 Carya illinoinensis HOM05D003665 ORTHO05D004387 1.6e-215 753.1 481 77.8
TWI31G1339 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 3.6e-215 751.9 486 76.3
TPR.G11547 Trifolium pratense HOM05D003665 ORTHO05D004387 4.6e-215 751.5 478 77.8
GSVIVG01025191001 Vitis vinifera HOM05D003665 ORTHO05D004387 1.0e-214 750.4 481 77.5
CsaV3_1G014040 Cucumis sativus L. HOM05D003665 ORTHO05D004387 2.3e-214 749.2 479 77.0
MELO3C004874.2 Cucumis melo HOM05D003665 ORTHO05D004387 3.0e-214 748.8 479 77.2
Eucgr.B02502 Eucalyptus grandis HOM05D003665 ORTHO05D004387 5.1e-214 748.0 464 80.0
Gohir.A03G033500 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.1e-213 746.9 493 76.3
CSS0007464 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 1.5e-213 746.5 568 69.0
Lalb_Chr24g0394651 Lupinus albus HOM05D003665 ORTHO05D004387 1.5e-213 746.5 473 80.3
Psat5g278960 Pisum sativum HOM05D003665 ORTHO05D004387 2.0e-213 746.1 478 77.8
Gohir.D03G134800 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.3e-212 743.4 493 76.1
Gorai.003G141900 Gossypium raimondii HOM05D003665 ORTHO05D004387 1.7e-212 743.0 493 75.7
vmacro03198 Vaccinium macrocarpon HOM05D003665 ORTHO05D004387 1.7e-212 743.0 474 77.8
Sed0022671 Sechium edule HOM05D003665 ORTHO05D004387 2.2e-212 742.7 578 67.1
Gohir.D05G103100 Gossypium hirsutum HOM05D003665 ORTHO05D004387 2.8e-212 742.3 570 67.9
Gorai.009G107400 Gossypium raimondii HOM05D003665 ORTHO05D004387 4.8e-212 741.5 571 67.8
CANSAT54G1114 Cannabis sativa HOM05D003665 ORTHO05D004387 1.4e-211 740.0 485 76.5
Hma1.2p1_0058F.1_g032480 Hydrangea macrophylla HOM05D003665 ORTHO05D004387 1.8e-211 739.6 480 77.9
Lj3g0015527 Lotus japonicus HOM05D003665 ORTHO05D004387 1.8e-211 739.6 474 78.9
Ciclev10028088m.g Citrus clementina HOM05D003665 ORTHO05D004387 5.3e-211 738.0 465 78.3
CSS0036787 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 6.9e-211 737.6 479 76.6
Sabra09G0007600 Salix brachista HOM05D003665 ORTHO05D004387 6.9e-211 737.6 562 67.6
ClCG01G013730 Citrullus lanatus HOM05D003665 ORTHO05D004387 1.2e-210 736.9 472 76.9
TAR623G1097 Trochodendron aralioides HOM05D003665 ORTHO05D004387 3.4e-210 735.3 494 75.5
Atru.chr3.3622 Acer truncatum HOM05D003665 ORTHO05D004387 1.0e-209 733.8 483 76.6
PGR119G2069 Punica granatum HOM05D003665 ORTHO05D004387 1.0e-209 733.8 475 76.8
Lalb_Chr22g0350251 Lupinus albus HOM05D003665 ORTHO05D004387 1.3e-209 733.4 486 77.8
MBI05_g08786_MAGBIO Magnolia biondii HOM05D003665 ORTHO05D004387 2.5e-208 729.2 469 77.8
QL01p022122 Quercus lobata HOM05D003665 ORTHO05D004387 2.5e-208 729.2 649 63.5
Gohir.A05G103400 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.2e-207 726.9 570 67.2
TAR369G0153 Trochodendron aralioides HOM05D003665 ORTHO05D004387 2.1e-207 726.1 482 75.3
Nn2g12882 Nelumbo nucifera HOM05D003665 ORTHO05D004387 1.8e-206 723.0 527 71.0
MSTRG.18661 Avicennia marina HOM05D003665 ORTHO05D004387 1.3e-204 716.8 480 73.8
EL10Ac2g02422 Beta vulgaris HOM05D003665 ORTHO05D004387 1.3e-204 716.8 511 71.0
Cpa.g.sc216.2 Carica papaya HOM05D003665 ORTHO05D004387 1.7e-204 716.5 462 77.7
arahy.Tifrunner.gnm1.ann1.IYQC31 Arachis hypogaea HOM05D003665 ORTHO05D004387 2.2e-204 716.1 538 69.7
Sopen03g034790 Solanum pennellii HOM05D003665 ORTHO05D004387 8.2e-204 714.1 483 74.3
Cc00_g12880 Coffea canephora HOM05D003665 ORTHO05D004387 1.8e-203 713.0 466 76.6
SalBow3G4611 Salvia bowleyana HOM05D003665 ORTHO05D004387 3.1e-203 712.2 480 74.0
SGA_v2.0_scaffold97G29239 Striga asiatica HOM05D003665 ORTHO05D004387 3.1e-203 712.2 474 74.3
Gohir.A08G198200 Gossypium hirsutum HOM05D003665 ORTHO05D004387 7.0e-203 711.1 491 74.1
Solyc03g115810.3 Solanum lycopersicum HOM05D003665 ORTHO05D004387 9.1e-203 710.7 483 74.1
arahy.Tifrunner.gnm1.ann1.RTB9TW Arachis hypogaea HOM05D003665 ORTHO05D004387 4.5e-202 708.4 536 69.0
Peaxi162Scf00274g00347 Petunia axillaris HOM05D003665 ORTHO05D004387 8.5e-201 704.1 458 76.6
Gorai.004G229200 Gossypium raimondii HOM05D003665 ORTHO05D004387 3.2e-200 702.2 489 73.2
Migut.D02227 Erythranthe guttata HOM05D003665 ORTHO05D004387 1.6e-199 699.9 480 72.1
PSO384G0045 Papaver somniferum HOM05D003665 ORTHO05D004387 1.6e-199 699.9 489 73.8
HanXRQChr01g0019371 Helianthus annuus HOM05D003665 ORTHO05D004387 1.0e-198 697.2 481 73.2
Actinidia24103 Actinidia chinensis HOM05D003665 ORTHO05D004387 3.0e-198 695.7 480 74.0
THA.LOC104826364 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 4.0e-198 695.3 476 72.3
TWI79G0002 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 1.1e-197 693.7 435 78.9
Nitab4.5_0001997g0130 Nicotiana tabacum HOM05D003665 ORTHO05D004387 1.5e-197 693.3 487 72.3
PSO339G3164 Papaver somniferum HOM05D003665 ORTHO05D004387 2.0e-197 693.0 463 75.2
SGA_v2.0_scaffold61G21127 Striga asiatica HOM05D003665 ORTHO05D004387 3.3e-197 692.2 480 73.3
COL.COLO4_18330 Corchorus olitorius HOM05D003665 ORTHO05D004387 2.2e-196 689.5 472 74.6
Dinv32740 Davidia involucrata HOM05D003665 ORTHO05D004387 4.8e-196 688.3 455 76.9
ECA248G0778 Erigeron canadensis HOM05D003665 ORTHO05D004387 8.2e-196 687.6 456 76.1
THA.LOC104815747 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 7.7e-194 681.0 466 72.1
ECA238G1380 Erigeron canadensis HOM05D003665 ORTHO05D004387 3.8e-193 678.7 475 71.4
Oeu030188.3 Olea europaea HOM05D003665 ORTHO05D004387 4.2e-192 675.2 459 74.3
Psat0s134g0040 Pisum sativum HOM05D003665 ORTHO05D004387 6.1e-191 671.4 495 72.3
Aqoxy4G03025 Aquilegia oxysepala HOM05D003665 ORTHO05D004387 1.4e-190 670.2 463 73.4
Thhalv10016386m.g Eutrema salsugineum HOM05D003665 ORTHO05D004387 5.7e-189 664.8 463 70.6
CARHR121340 Cardamine hirsuta HOM05D003665 ORTHO05D004387 7.5e-189 664.5 462 71.0
Aa31LG5G7830 Aethionema arabicum HOM05D003665 ORTHO05D004387 1.4e-187 660.2 484 68.4
Lsat_1_v5_gn_1_64201 Lactuca sativa HOM05D003665 ORTHO05D004387 1.4e-187 660.2 552 63.9
HanXRQChr14g0452781 Helianthus annuus HOM05D003665 ORTHO05D004387 1.8e-187 659.8 489 68.1
Sp4g11190 Schrenkiella parvula HOM05D003665 ORTHO05D004387 1.8e-187 659.8 463 70.4
Lsat_1_v5_gn_2_100120 Lactuca sativa HOM05D003665 ORTHO05D004387 3.1e-187 659.1 443 72.9
AL4G21640 Arabidopsis lyrata HOM05D003665 ORTHO05D004387 5.9e-186 654.8 482 68.3
BcaB01g03101 Brassica carinata HOM05D003665 ORTHO05D004387 7.7e-186 654.4 485 68.0
BcaC01g04965 Brassica carinata HOM05D003665 ORTHO05D004387 1.3e-185 653.7 573 60.7
Dinv09884 Davidia involucrata HOM05D003665 ORTHO05D004387 1.3e-185 653.7 504 69.4
A03p26380 Brassica napus HOM05D003665 ORTHO05D004387 5.0e-185 651.7 471 68.2
Carub.0004s0931 Capsella rubella HOM05D003665 ORTHO05D004387 5.0e-185 651.7 462 69.3
Nitab4.5_0001195g0040 Nicotiana tabacum HOM05D003665 ORTHO05D004387 5.0e-185 651.7 470 70.9
AT2G28390 Arabidopsis thaliana HOM05D003665 ORTHO05D004387 8.5e-185 651.0 460 70.2
C03p31650 Brassica napus HOM05D003665 ORTHO05D004387 2.5e-184 649.4 471 67.9
BolC3t15507H Brassica oleracea HOM05D003665 ORTHO05D004387 2.5e-184 649.4 584 59.6
BcaB06g25420 Brassica carinata HOM05D003665 ORTHO05D004387 4.2e-184 648.7 487 67.8
BraA03t11853Z Brassica rapa HOM05D003665 ORTHO05D004387 5.5e-184 648.3 584 58.6
C04p23090 Brassica napus HOM05D003665 ORTHO05D004387 1.6e-183 646.7 465 68.8
Ca_01409_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 1.6e-183 646.7 437 75.7
ATR0033G036 Amborella trichopoda HOM05D003665 ORTHO05D004387 2.1e-183 646.4 455 71.6
BraA07t29601Z Brassica rapa HOM05D003665 ORTHO05D004387 2.1e-183 646.4 469 68.2
A07p18960 Brassica napus HOM05D003665 ORTHO05D004387 3.6e-183 645.6 463 68.7
BolC4t23802H Brassica oleracea HOM05D003665 ORTHO05D004387 6.8e-182 641.3 468 67.7
Os01g0976000 Oryza sativa ssp. japonica HOM05D003665 ORTHO05D004387 3.4e-181 639.0 456 69.7
Sc06g0010260 Simmondsia chinensis HOM05D003665 ORTHO05D004387 6.3e-180 634.8 426 75.1
SEGI_12034 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 7.3e-176 621.3 452 67.5
Actinidia07137 Actinidia chinensis HOM05D003665 ORTHO05D004387 3.4e-173 612.5 396 79.8
PGR102G1414 Punica granatum HOM05D003665 ORTHO05D004387 1.0e-169 600.9 460 68.3
DCAR_006064 Daucus carota HOM05D003665 ORTHO05D004387 1.3e-169 600.5 447 70.5
Hund03712 Selenicereus undatus HOM05D003665 ORTHO05D004387 7.3e-168 594.7 377 77.7
SEGI_16973 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 1.6e-167 593.6 451 64.1
HPP92_006598 Vanilla planifolia HOM05D003665 ORTHO05D004387 4.1e-163 578.9 450 65.1
Mapoly0115s0070 Marchantia polymorpha HOM05D003665 ORTHO05D004387 1.3e-156 557.4 484 57.9
SMO356G0046 Selaginella moellendorffii HOM05D003665 ORTHO05D004387 2.9e-156 556.2 475 58.3
Gohir.D08G215600 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.1e-155 554.3 407 71.5
AUR62037705 Chenopodium quinoa HOM05D003665 ORTHO05D004387 3.2e-155 552.7 498 59.4
Ah.12g061180 Amaranthus hybridus HOM05D003665 ORTHO05D004387 6.0e-154 548.5 431 66.8
Lj2C1027G11 Lonicera japonica HOM05D003665 ORTHO05D004387 8.6e-153 544.7 440 66.6
Nitab4.5_0001211g0250 Nicotiana tabacum HOM05D003665 ORTHO05D004387 8.6e-153 544.7 497 59.4
AUR62020295 Chenopodium quinoa HOM05D003665 ORTHO05D004387 4.0e-150 535.8 468 62.4
AagrBONN_evm.TU.Sc2ySwM_117.1231 Anthoceros agrestis HOM05D003665 ORTHO05D004387 3.0e-145 519.6 457 56.7
Actinidia13994 Actinidia chinensis HOM05D003665 ORTHO05D004387 6.6e-145 518.5 331 79.2
Pp3c3_30360 Physcomitrium patens HOM05D003665 ORTHO05D004387 3.3e-144 516.2 466 56.2
Sabra04G0142700 Salix brachista HOM05D003665 ORTHO05D004387 9.6e-144 514.6 359 71.9
Nitab4.5_0005900g0050 Nicotiana tabacum HOM05D003665 ORTHO05D004387 7.8e-138 495.0 464 58.4
AagrBONN_evm.TU.Sc2ySwM_228.3586 Anthoceros agrestis HOM05D003665 ORTHO05D004387 2.3e-137 493.4 448 56.0
Actinidia12926 Actinidia chinensis HOM05D003665 ORTHO05D004387 3.1e-134 483.0 342 73.7
CDE08G0353 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 5.4e-131 472.2 312 74.4
unitig_899.g14918 Utricularia gibba HOM05D003665 ORTHO05D004387 1.1e-123 448.0 414 56.8
Pp3c10_13820 Physcomitrium patens HOM05D003665 ORTHO05D004387 2.4e-123 446.8 414 55.3
Zm00001eb139700 Zea mays HOM05D003665 ORTHO05D004387 4.6e-122 442.6 328 67.1
Peaxi162Scf00106g00431 Petunia axillaris HOM05D003665 ORTHO05D004387 5.3e-118 429.1 403 59.6
PGSC0003DMG400019504 Solanum tuberosum HOM05D003665 ORTHO05D004387 2.2e-103 380.6 253 75.5
Atru.chr3.3619 Acer truncatum HOM05D003665 ORTHO05D004387 4.6e-98 362.8 248 73.0
CAN.G479.67 Capsicum annuum HOM05D003665 ORTHO05D004387 2.8e-87 327.0 218 74.3
CDE02G0373 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 3.8e-84 316.6 217 71.4
BcaB06g25423 Brassica carinata HOM05D003665 ORTHO05D004387 6.1e-82 309.3 225 69.8
CBR_g29308 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-64 251.5 211 59.2
TPR.G35439 Trifolium pratense HOM05D003665 ORTHO05D004387 2.5e-59 234.2 140 82.1
CDE08G1291 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 1.5e-56 224.9 148 74.3
SHI09320 Sapria himalayana HOM05D003665 ORTHO05D004387 2.0e-56 224.6 186 61.3
Lsat_1_v5_gn_8_29480 Lactuca sativa HOM05D003665 ORTHO05D004387 3.7e-55 220.3 162 69.1
Cre03.g154500 Chlamydomonas reinhardtii HOM05D003665 ORTHO05D004387 2.6e-48 197.6 270 43.7
Actinidia13995 Actinidia chinensis HOM05D003665 ORTHO05D004387 7.8e-45 186.0 99 89.9
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 3.9e-44 183.7 183 56.8
CDE02G1163 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 7.3e-43 179.5 148 62.2
MCO05G084 Micromonas commoda HOM05D003665 ORTHO05D004387 1.2e-42 178.7 610 24.8
arahy.Tifrunner.gnm1.ann1.3H693L Arachis hypogaea HOM05D003665 ORTHO05D004387 4.7e-42 176.8 120 76.7
Lsat_1_v5_gn_6_45780 Lactuca sativa HOM05D003665 ORTHO05D004387 4.7e-42 176.8 147 62.6
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 8.1e-42 176.0 139 64.7
Cfa025752 Carpinus fangiana HOM05D003665 ORTHO05D004387 4.0e-41 173.7 446 28.5
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 1.7e-39 168.3 133 64.7
Duzib235G1059 Durio zibethinus HOM05D003665 ORTHO05D004387 3.5e-37 160.6 128 64.8
Lsat_1_v5_gn_6_39960 Lactuca sativa HOM05D003665 ORTHO05D004387 5.1e-36 156.8 123 65.9
SHI09317 Sapria himalayana HOM05D003665 ORTHO05D004387 1.7e-28 131.7 74 83.8
Duzib084G1104 Durio zibethinus HOM05D003665 ORTHO05D004387 5.1e-28 130.2 88 70.5
TPR.G15544 Trifolium pratense HOM05D003665 ORTHO05D004387 1.5e-27 128.6 63 92.1
VMungo0225G0001 Vigna mungo HOM05D003665 ORTHO05D004387 2.0e-24 118.2 68 85.3
Ca_23093_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 5.8e-24 116.7 65 87.7
Glyma.11G146000 Glycine max HOM05D003665 ORTHO05D004387 2.2e-23 114.8 81 69.1
VMungo1074G0001 Vigna mungo HOM05D003665 ORTHO05D004387 7.1e-22 109.8 108 57.4
SHI09315 Sapria himalayana HOM05D003665 ORTHO05D004387 5.6e-19 100.1 52 88.5
BolC4t27275H Brassica oleracea HOM05D003665 ORTHO05D004387 8.7e-12 76.3 128 37.5
SHI09316 Sapria himalayana HOM05D003665 ORTHO05D004387 8.1e-10 69.7 63 55.6
Lalb_Chr22g0350671 Lupinus albus HOM05D003665 ORTHO05D004387 1.1e-09 69.3 42 81.0
HanXRQChr06g0179151 Helianthus annuus HOM05D003665 ORTHO05D004387 1.8e-09 68.6 36 86.1
HanXRQChr04g0103101 Helianthus annuus HOM05D003665 ORTHO05D004387 3.2e-06 57.8 32 78.1
BraA04t17717Z Brassica rapa HOM05D003665 ORTHO05D040370 7.1e-06 56.6 64 46.9
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 7.1e-06 56.6 31 87.1


User provided reference genes

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