Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.3WRP69 Arachis hypogaea HOM05D002758 ORTHO05D002885 5.7e-49 197.6 125 100.0
arahy.Tifrunner.gnm1.ann1.A8WRUN Arachis hypogaea HOM05D002758 ORTHO05D002885 5.7e-49 197.6 125 100.0
Glyma.08G211800 Glycine max HOM05D002758 ORTHO05D002885 8.6e-21 104.0 142 50.7
Glyma.07G031000 Glycine max HOM05D002758 ORTHO05D002885 1.5e-20 103.2 142 50.7
Phvul.010G155100 Phaseolus vulgaris HOM05D002758 ORTHO05D002885 1.1e-18 97.1 139 49.6
Phvul.005G177400 Phaseolus vulgaris HOM05D002758 ORTHO05D002885 1.2e-17 93.6 131 52.7
Manes.11G055700 Manihot esculenta HOM05D002758 ORTHO05D002885 1.5e-17 93.2 123 54.5
Atru.chr1.2990 Acer truncatum HOM05D002758 ORTHO05D002885 2.0e-17 92.8 131 48.1
Glyma.15G008300 Glycine max HOM05D002758 ORTHO05D002885 2.0e-17 92.8 130 56.2
VMungo0331G0585 Vigna mungo HOM05D002758 ORTHO05D002885 2.0e-17 92.8 132 51.5
Thecc.06G021700 Theobroma cacao HOM05D002758 ORTHO05D002885 4.4e-17 91.7 130 49.2
Manes.04G113800 Manihot esculenta HOM05D002758 ORTHO05D002885 7.5e-17 90.9 137 46.7
TPR.G38648 Trifolium pratense HOM05D002758 ORTHO05D002885 2.2e-16 89.4 141 51.1
Lj3g0013801 Lotus japonicus HOM05D002758 ORTHO05D002885 2.9e-16 89.0 136 58.1
Psat5g302120 Pisum sativum HOM05D002758 ORTHO05D002885 3.7e-16 88.6 138 47.8
CiPaw.01G246400 Carya illinoinensis HOM05D002758 ORTHO05D002885 6.4e-16 87.8 137 46.7
VMungo1080G1568 Vigna mungo HOM05D002758 ORTHO05D002885 6.4e-16 87.8 131 45.8
TPR.G37180 Trifolium pratense HOM05D002758 ORTHO05D002885 8.3e-16 87.4 139 47.5
Glyma.13G365000 Glycine max HOM05D002758 ORTHO05D002885 1.4e-15 86.7 131 48.1
Medtr4g010530 Medicago truncatula HOM05D002758 ORTHO05D002885 1.9e-15 86.3 135 46.7
Duzib235G1225 Durio zibethinus HOM05D002758 ORTHO05D002885 4.1e-15 85.1 132 46.2
Gohir.D10G077100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 5.4e-15 84.7 130 46.9
Ciclev10026775m.g Citrus clementina HOM05D002758 ORTHO05D002885 7.0e-15 84.3 125 47.2
COL.COLO4_12950 Corchorus olitorius HOM05D002758 ORTHO05D002885 7.0e-15 84.3 132 47.0
Gohir.A10G074300 Gossypium hirsutum HOM05D002758 ORTHO05D002885 9.2e-15 84.0 132 47.7
Lalb_Chr10g0096781 Lupinus albus HOM05D002758 ORTHO05D002885 9.2e-15 84.0 137 50.4
Medtr2g103750 Medicago truncatula HOM05D002758 ORTHO05D002885 1.2e-14 83.6 138 50.0
QL09p026717 Quercus lobata HOM05D002758 ORTHO05D002885 1.2e-14 83.6 136 50.0
AL1G60820 Arabidopsis lyrata HOM05D002758 ORTHO05D002885 2.1e-14 82.8 134 50.7
Gorai.011G083300 Gossypium raimondii HOM05D002758 ORTHO05D002885 2.1e-14 82.8 130 46.2
Psat7g255440 Pisum sativum HOM05D002758 ORTHO05D002885 2.1e-14 82.8 135 53.3
Thhalv10011857m.g Eutrema salsugineum HOM05D002758 ORTHO05D002885 2.7e-14 82.4 136 50.7
AT1G52565 Arabidopsis thaliana HOM05D002758 ORTHO05D002885 3.5e-14 82.0 132 54.5
A06p01750 Brassica napus HOM05D002758 ORTHO05D002885 3.5e-14 82.0 134 51.5
BraA06t23394Z Brassica rapa HOM05D002758 ORTHO05D002885 3.5e-14 82.0 134 51.5
Duzib160G0702 Durio zibethinus HOM05D002758 ORTHO05D002885 1.3e-13 80.1 126 47.6
A05p18910 Brassica napus HOM05D002758 ORTHO05D002885 1.7e-13 79.7 136 42.6
Sp1g39120 Schrenkiella parvula HOM05D002758 ORTHO05D002885 1.7e-13 79.7 134 52.2
TWI18G1221 Tripterygium wilfordii HOM05D002758 ORTHO05D002885 1.7e-13 79.7 131 45.0
BcaC08g44003 Brassica carinata HOM05D002758 ORTHO05D002885 2.3e-13 79.3 136 42.6
BcaB02g10984 Brassica carinata HOM05D002758 ORTHO05D002885 3.0e-13 79.0 133 51.1
BcaC08g43429 Brassica carinata HOM05D002758 ORTHO05D002885 3.0e-13 79.0 136 42.6
C06p14110 Brassica napus HOM05D002758 ORTHO05D002885 3.0e-13 79.0 136 48.5
BolC6t36589H Brassica oleracea HOM05D002758 ORTHO05D002885 3.0e-13 79.0 136 48.5
CSS0041896 Camellia sinensis var. sinensis HOM05D002758 ORTHO05D002885 3.0e-13 79.0 132 44.7
Lj3g0008770 Lotus japonicus HOM05D002758 ORTHO05D002885 3.9e-13 78.6 146 45.9
BolC6t35882H Brassica oleracea HOM05D002758 ORTHO05D002885 5.1e-13 78.2 136 42.6
GSVIVG01017318001 Vitis vinifera HOM05D002758 ORTHO05D002885 5.1e-13 78.2 139 44.6
Cpa.g.sc10.256 Carica papaya HOM05D002758 ORTHO05D002885 1.5e-12 76.6 128 53.1
Carub.0001s4153 Capsella rubella HOM05D002758 ORTHO05D002885 1.9e-12 76.3 134 50.7
BraA05t20788Z Brassica rapa HOM05D002758 ORTHO05D002885 2.5e-12 75.9 134 47.8
CARHR042690 Cardamine hirsuta HOM05D002758 ORTHO05D002885 2.5e-12 75.9 132 47.0
RcHm_v2.0_Chr2g0135861 Rosa chinensis HOM05D002758 ORTHO05D002885 2.5e-12 75.9 126 43.7
Sed0016112 Sechium edule HOM05D002758 ORTHO05D002885 3.3e-12 75.5 123 52.8
Lalb_Chr25g0279401 Lupinus albus HOM05D002758 ORTHO05D002885 4.3e-12 75.1 125 44.8
Gohir.A05G125833 Gossypium hirsutum HOM05D002758 ORTHO05D002885 5.6e-12 74.7 131 48.1
Gohir.A05G125900 Gossypium hirsutum HOM05D002758 ORTHO05D002885 5.6e-12 74.7 131 48.1
Sed0015979 Sechium edule HOM05D002758 ORTHO05D002885 5.6e-12 74.7 133 50.4
THA.LOC104815531 Tarenaya hassleriana HOM05D002758 ORTHO05D002885 5.6e-12 74.7 134 48.5
Aa31LG8G2960 Aethionema arabicum HOM05D002758 ORTHO05D002885 7.3e-12 74.3 132 49.2
Dinv30594 Davidia involucrata HOM05D002758 ORTHO05D002885 1.2e-11 73.6 138 40.6
Gorai.009G130900 Gossypium raimondii HOM05D002758 ORTHO05D002885 1.2e-11 73.6 126 47.6
Nn2g12045 Nelumbo nucifera HOM05D002758 ORTHO05D002885 1.2e-11 73.6 140 42.1
Nn8g39466 Nelumbo nucifera HOM05D002758 ORTHO05D002885 1.2e-11 73.6 134 41.8
CiPaw.02G156300 Carya illinoinensis HOM05D002758 ORTHO05D002885 1.6e-11 73.2 136 39.7
Gohir.D05G126800 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.6e-11 73.2 131 47.3
Actinidia15774 Actinidia chinensis HOM05D002758 ORTHO05D002885 2.1e-11 72.8 135 42.2
Aqoxy7G03691 Aquilegia oxysepala HOM05D002758 ORTHO05D002885 2.1e-11 72.8 139 41.0
FAN02G3379 Fragaria x ananassa HOM05D002758 ORTHO05D002885 2.1e-11 72.8 123 42.3
CANSAT56G1388 Cannabis sativa HOM05D002758 ORTHO05D002885 3.6e-11 72.0 136 40.4
Cfa001976 Carpinus fangiana HOM05D002758 ORTHO05D002885 3.6e-11 72.0 137 39.4
FAN14G2484 Fragaria x ananassa HOM05D002758 ORTHO05D002885 3.6e-11 72.0 123 42.3
Prupe.3G084900 Prunus persica HOM05D002758 ORTHO05D002885 3.6e-11 72.0 132 41.7
Actinidia01753 Actinidia chinensis HOM05D002758 ORTHO05D002885 4.7e-11 71.6 135 43.0
BcaC08g43430 Brassica carinata HOM05D002758 ORTHO05D002885 4.7e-11 71.6 134 41.8
ClCG07G012650 Citrullus lanatus HOM05D002758 ORTHO05D002885 4.7e-11 71.6 138 50.0
Potri.001G192800 Populus trichocarpa HOM05D002758 ORTHO05D002885 4.7e-11 71.6 144 40.3
vmacro18989 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 4.7e-11 71.6 138 42.8
Thhalv10021746m.g Eutrema salsugineum HOM05D002758 ORTHO05D002885 6.2e-11 71.2 141 39.7
FAN05G1526 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.1e-10 70.5 121 41.3
TAR626G0616 Trochodendron aralioides HOM05D002758 ORTHO05D002885 1.1e-10 70.5 138 42.0
FvH4_6g29910 Fragaria vesca HOM05D002758 ORTHO05D002885 1.4e-10 70.1 123 41.5
MD17G1209300 Malus domestica HOM05D002758 ORTHO05D002885 1.4e-10 70.1 134 42.5
QL05p029455 Quercus lobata HOM05D002758 ORTHO05D002885 2.3e-10 69.3 139 41.0
Sed0016169 Sechium edule HOM05D002758 ORTHO05D002885 2.3e-10 69.3 142 37.3
AL3G28420 Arabidopsis lyrata HOM05D002758 ORTHO05D002885 3.1e-10 68.9 141 42.6
PGR031G0668 Punica granatum HOM05D002758 ORTHO05D002885 3.1e-10 68.9 127 44.1
AT3G15760 Arabidopsis thaliana HOM05D002758 ORTHO05D002885 4.0e-10 68.6 137 40.9
arahy.Tifrunner.gnm1.ann1.FSE12S Arachis hypogaea HOM05D002758 ORTHO05D002885 4.0e-10 68.6 136 41.2
arahy.Tifrunner.gnm1.ann1.66WDLV Arachis hypogaea HOM05D002758 ORTHO05D002885 6.8e-10 67.8 133 42.9
Lalb_Chr01g0012401 Lupinus albus HOM05D002758 ORTHO05D002885 6.8e-10 67.8 130 42.3
TAR383G0328 Trochodendron aralioides HOM05D002758 ORTHO05D002885 8.9e-10 67.4 119 42.0
Dinv36518 Davidia involucrata HOM05D002758 ORTHO05D002885 1.2e-09 67.0 139 47.5
Peaxi162Scf00332g00756 Petunia axillaris HOM05D002758 ORTHO05D002885 1.2e-09 67.0 128 40.6
Carub.0003s1550 Capsella rubella HOM05D002758 ORTHO05D002885 1.5e-09 66.6 144 39.6
arahy.Tifrunner.gnm1.ann1.R8JN66 Arachis hypogaea HOM05D002758 ORTHO05D002885 2.0e-09 66.2 138 39.9
Sp3g14090 Schrenkiella parvula HOM05D002758 ORTHO05D002885 2.6e-09 65.9 144 45.8
Hund00526 Selenicereus undatus HOM05D002758 ORTHO05D002885 4.4e-09 65.1 134 39.6
BcaC09g48555 Brassica carinata HOM05D002758 ORTHO05D002885 7.5e-09 64.3 144 38.2
C01p48670 Brassica napus HOM05D002758 ORTHO05D002885 7.5e-09 64.3 144 38.2
BolC1t04821H Brassica oleracea HOM05D002758 ORTHO05D002885 7.5e-09 64.3 144 38.2
BraA05t22185Z Brassica rapa HOM05D002758 ORTHO05D002885 7.5e-09 64.3 139 38.8
FAN26G2290 Fragaria x ananassa HOM05D002758 ORTHO05D002885 7.5e-09 64.3 142 38.7
Lalb_Chr13g0301821 Lupinus albus HOM05D002758 ORTHO05D002885 9.9e-09 63.9 124 41.1
CARHR090850 Cardamine hirsuta HOM05D002758 ORTHO05D002885 1.3e-08 63.5 144 38.2
Hma1.2p1_1962F.1_g309250 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 1.3e-08 63.5 137 38.7
CsaV3_4G001540 Cucumis sativus L. HOM05D002758 ORTHO05D002885 1.7e-08 63.2 135 50.4
FAN23G2585 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.7e-08 63.2 142 38.0
Potri.018G131100 Populus trichocarpa HOM05D002758 ORTHO05D002885 1.7e-08 63.2 134 40.3
RcHm_v2.0_Chr2g0088291 Rosa chinensis HOM05D002758 ORTHO05D002885 2.2e-08 62.8 142 38.0
Sc10g0005850 Simmondsia chinensis HOM05D002758 ORTHO05D002885 2.2e-08 62.8 140 37.1
PSO210G4958 Papaver somniferum HOM05D002758 ORTHO05D002885 2.9e-08 62.4 138 37.0
BcaB04g20905 Brassica carinata HOM05D002758 ORTHO05D002885 3.7e-08 62.0 140 37.9
BcaC05g28933 Brassica carinata HOM05D002758 ORTHO05D002885 3.7e-08 62.0 139 38.1
A05p33610 Brassica napus HOM05D002758 ORTHO05D002885 3.7e-08 62.0 139 38.1
C05p50610 Brassica napus HOM05D002758 ORTHO05D002885 3.7e-08 62.0 139 38.1
BolC5t33807H Brassica oleracea HOM05D002758 ORTHO05D002885 3.7e-08 62.0 131 38.2
Rhsim01G0069000 Rhododendron simsii HOM05D002758 ORTHO05D002885 4.9e-08 61.6 148 37.2
FvH4_1g03160 Fragaria vesca HOM05D002758 ORTHO05D002885 6.4e-08 61.2 141 37.6
Psat4g039800 Pisum sativum HOM05D002758 ORTHO05D002885 6.4e-08 61.2 136 43.4
Aa31LG10G2440 Aethionema arabicum HOM05D002758 ORTHO05D002885 8.3e-08 60.8 152 38.2
MELO3C017886.2 Cucumis melo HOM05D002758 ORTHO05D002885 1.1e-07 60.5 135 51.1
Hund26508 Selenicereus undatus HOM05D002758 ORTHO05D002885 1.1e-07 60.5 136 41.2
PGSC0003DMG400000615 Solanum tuberosum HOM05D002758 ORTHO05D002885 1.1e-07 60.5 127 41.7
C06p07990 Brassica napus HOM05D002758 ORTHO05D002885 1.4e-07 60.1 145 35.9
Potri.006G069100 Populus trichocarpa HOM05D002758 ORTHO05D002885 1.4e-07 60.1 136 39.0
BcaB06g25687 Brassica carinata HOM05D002758 ORTHO05D002885 1.9e-07 59.7 138 44.9
Cc04_g04270 Coffea canephora HOM05D002758 ORTHO05D002885 2.4e-07 59.3 136 37.5
Duzib187G0530 Durio zibethinus HOM05D002758 ORTHO05D002885 2.4e-07 59.3 142 40.8
FAN28G2446 Fragaria x ananassa HOM05D000315 ORTHO05D001379 2.4e-07 59.3 133 37.6
Gorai.001G042500 Gossypium raimondii HOM05D002758 ORTHO05D002885 3.2e-07 58.9 139 42.4
Nitab4.5_0005728g0010 Nicotiana tabacum HOM05D002758 ORTHO05D002885 3.2e-07 58.9 134 40.3
EL10Ac9g21912 Beta vulgaris HOM05D002758 ORTHO05D002885 4.1e-07 58.5 129 46.5
FAN19G2709 Fragaria x ananassa HOM05D002758 ORTHO05D002885 4.1e-07 58.5 142 36.6
MSTRG.11135 Avicennia marina HOM05D002758 ORTHO05D002885 5.4e-07 58.2 131 36.6
Duzib168G0478 Durio zibethinus HOM05D002758 ORTHO05D002885 5.4e-07 58.2 148 45.9
Medtr4g114600 Medicago truncatula HOM05D002758 ORTHO05D002885 5.4e-07 58.2 142 37.3
GSVIVG01015544001 Vitis vinifera HOM05D002758 ORTHO05D002885 5.4e-07 58.2 130 53.1
Gohir.A07G036200 Gossypium hirsutum HOM05D002758 ORTHO05D002885 7.1e-07 57.8 139 39.6
PSO210G1692 Papaver somniferum HOM05D002758 ORTHO05D002885 7.1e-07 57.8 138 37.0
A01p38340 Brassica napus HOM05D002758 ORTHO05D002885 9.2e-07 57.4 140 47.9
BraA01t03885Z Brassica rapa HOM05D002758 ORTHO05D002885 9.2e-07 57.4 140 47.1
Manes.14G132900 Manihot esculenta HOM05D002758 ORTHO05D002885 9.2e-07 57.4 144 40.3
Sopen03g035550 Solanum pennellii HOM05D002758 ORTHO05D002885 9.2e-07 57.4 130 41.5
Ciclev10009903m.g Citrus clementina HOM05D002758 ORTHO05D002885 1.2e-06 57.0 128 44.5
Duzib150G0461 Durio zibethinus HOM05D002758 ORTHO05D002885 1.2e-06 57.0 129 38.0
PGR142G4319 Punica granatum HOM05D002758 ORTHO05D002885 1.2e-06 57.0 179 42.5
Solyc03g116630.3 Solanum lycopersicum HOM05D002758 ORTHO05D002885 1.2e-06 57.0 134 42.5
Thecc.09G127400 Theobroma cacao HOM05D002758 ORTHO05D002885 1.6e-06 56.6 148 41.9
Glyma.04G147200 Glycine max HOM05D002758 ORTHO05D002885 2.1e-06 56.2 145 39.3
Gohir.D07G040200 Gossypium hirsutum HOM05D002758 ORTHO05D002885 2.1e-06 56.2 139 43.2
Hund06567 Selenicereus undatus HOM05D002758 ORTHO05D002885 2.7e-06 55.8 141 33.3
Hund09249 Selenicereus undatus HOM05D002758 ORTHO05D002885 2.7e-06 55.8 147 37.4
Sc18g0000570 Simmondsia chinensis HOM05D002758 ORTHO05D002885 2.7e-06 55.8 131 38.2
MD15G1172200 Malus domestica HOM05D002758 ORTHO05D002885 3.5e-06 55.5 140 36.4
Nitab4.5_0001764g0140 Nicotiana tabacum HOM05D002758 ORTHO05D002885 3.5e-06 55.5 127 39.4
Prupe.7G243900 Prunus persica HOM05D002758 ORTHO05D002885 3.5e-06 55.5 152 36.8
Lalb_Chr07g0178991 Lupinus albus HOM05D002758 ORTHO05D002885 4.6e-06 55.1 120 37.5
Oeu058050.1 Olea europaea HOM05D002758 ORTHO05D002885 4.6e-06 55.1 128 46.1
DCAR_017810 Daucus carota HOM05D002758 ORTHO05D002885 6.0e-06 54.7 122 41.0
MD02G1030600 Malus domestica HOM05D002758 ORTHO05D002885 6.0e-06 54.7 142 35.9
Manes.06G058000 Manihot esculenta HOM05D002758 ORTHO05D002885 7.8e-06 54.3 146 37.7
Oeu034104.1 Olea europaea HOM05D002758 ORTHO05D002885 7.8e-06 54.3 137 41.6
Sabra06G0051500 Salix brachista HOM05D002758 ORTHO05D002885 7.8e-06 54.3 139 33.8
VMungo1215G1272 Vigna mungo HOM05D002758 ORTHO05D002885 7.8e-06 54.3 123 36.6


User provided reference genes

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