Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 2.6e-113 412.1 218 100.0
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 2.6e-113 412.1 218 100.0
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 2.6e-113 412.1 218 100.0
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 2.6e-113 412.1 218 100.0
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 4.0e-106 388.3 218 91.3
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 2.9e-104 382.1 218 89.9
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 2.9e-104 382.1 217 91.2
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 2.9e-104 382.1 218 89.9
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 3.7e-104 381.7 218 92.2
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 6.4e-104 380.9 218 88.1
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 6.4e-104 380.9 218 92.2
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 1.1e-103 380.2 218 90.8
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 1.4e-103 379.8 218 89.9
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 1.8e-103 379.4 218 90.8
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 1.8e-103 379.4 218 92.2
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 5.4e-103 377.9 218 88.1
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 7.0e-103 377.5 218 89.9
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 7.8e-102 374.0 218 88.5
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 7.8e-102 374.0 218 88.5
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 7.8e-102 374.0 218 88.5
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 7.8e-102 374.0 211 90.5
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 1.0e-101 373.6 218 87.2
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.7e-101 372.9 218 88.5
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 3.0e-101 372.1 218 88.1
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 5.0e-101 371.3 218 84.9
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 8.6e-101 370.5 218 88.5
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 8.6e-101 370.5 217 88.0
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 2.5e-100 369.0 218 87.2
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 2.5e-100 369.0 218 84.4
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 2.5e-100 369.0 218 84.4
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 2.5e-100 369.0 217 88.0
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 3.3e-100 368.6 218 85.3
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 3.3e-100 368.6 218 85.8
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 3.3e-100 368.6 218 88.1
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 4.3e-100 368.2 218 85.8
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 5.6e-100 367.9 218 87.2
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 5.6e-100 367.9 218 85.8
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 7.3e-100 367.5 216 86.1
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 9.5e-100 367.1 218 84.4
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 1.2e-99 366.7 215 86.5
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 1.2e-99 366.7 218 86.7
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 1.2e-99 366.7 218 87.6
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 2.8e-99 365.5 220 87.7
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 4.7e-99 364.8 211 86.7
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 4.7e-99 364.8 218 86.2
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 4.7e-99 364.8 218 84.4
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 8.0e-99 364.0 218 84.9
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 1.4e-98 363.2 218 83.9
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 4.0e-98 361.7 218 85.3
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 4.0e-98 361.7 217 83.4
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 4.0e-98 361.7 218 83.5
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 4.0e-98 361.7 218 86.2
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 4.0e-98 361.7 218 84.9
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 1.5e-97 359.8 217 83.9
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 2.6e-97 359.0 218 83.9
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 2.6e-97 359.0 218 81.7
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 3.4e-97 358.6 223 81.6
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 4.4e-97 358.2 218 83.5
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 4.4e-97 358.2 217 83.4
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 7.5e-97 357.5 211 84.8
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 2.2e-96 355.9 218 83.5
Medtr5g044730 Medicago truncatula HOM05D005338 ORTHO05D006550 2.2e-96 355.9 207 86.5
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 3.7e-96 355.1 214 82.7
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 8.3e-96 354.0 218 81.2
vmacro21598 Vaccinium macrocarpon HOM05D005338 ORTHO05D006550 8.3e-96 354.0 207 88.4
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 1.4e-95 353.2 218 82.6
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 2.4e-95 352.4 215 81.9
Gohir.D11G220100 Gossypium hirsutum HOM05D005338 ORTHO05D006550 2.4e-95 352.4 209 87.1
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 5.4e-95 351.3 215 82.3
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 5.4e-95 351.3 215 82.3
TPR.G29215 Trifolium pratense HOM05D005338 ORTHO05D006550 7.0e-95 350.9 207 85.5
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 1.2e-94 350.1 215 81.9
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 1.6e-94 349.7 218 82.1
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 1.6e-94 349.7 218 84.9
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 1.3e-93 346.7 220 79.5
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 2.3e-93 345.9 202 84.7
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 3.0e-93 345.5 202 84.7
Hund12454 Selenicereus undatus HOM05D005338 ORTHO05D006550 5.0e-93 344.7 207 83.6
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 1.5e-92 343.2 219 81.7
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 2.5e-92 342.4 219 81.7
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 2.5e-92 342.4 219 81.7
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 3.3e-92 342.0 219 81.7
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 3.3e-92 342.0 219 81.7
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 4.3e-92 341.7 221 77.8
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 5.6e-92 341.3 221 81.4
Lsat_1_v5_gn_1_19481 Lactuca sativa HOM05D005338 ORTHO05D006550 2.1e-91 339.3 206 83.5
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 2.8e-91 339.0 219 81.3
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 2.8e-91 339.0 294 65.3
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 3.6e-91 338.6 218 77.5
Peaxi162Scf00479g00910 Petunia axillaris HOM05D005338 ORTHO05D006550 1.4e-90 336.7 206 82.0
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 4.0e-90 335.1 218 75.7
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 1.2e-89 333.6 218 76.1
Sabra07G0078500 Salix brachista HOM05D005338 ORTHO05D006550 7.5e-89 330.9 211 81.0
unitig_744.g23988 Utricularia gibba HOM05D005338 ORTHO05D006550 1.7e-88 329.7 215 80.5
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 6.4e-88 327.8 218 74.8
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 3.2e-87 325.5 277 63.5
Sp4g01410 Schrenkiella parvula HOM05D005338 ORTHO05D006550 2.1e-86 322.8 218 76.1
Zm00001eb236490 Zea mays HOM05D005338 ORTHO05D006550 2.7e-86 322.4 218 76.6
ATR0767G114 Amborella trichopoda HOM05D005338 ORTHO05D006550 4.6e-86 321.6 218 75.2
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 6.0e-86 321.2 196 83.2
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 2.3e-85 319.3 201 77.1
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 7.3e-84 314.3 215 74.0
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 2.1e-83 312.8 215 73.5
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 2.8e-83 312.4 211 72.0
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 1.4e-82 310.1 215 73.0
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 5.2e-82 308.1 215 74.9
Ca_02026_v3 Cicer arietinum L. HOM05D005338 ORTHO05D006550 1.2e-78 297.0 164 90.9
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 6.0e-78 294.7 185 80.5
MELO3C010912.2 Cucumis melo HOM05D005338 ORTHO05D006550 1.6e-75 286.6 174 82.8
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 1.6e-75 286.6 185 80.5
Lj4A782T79 Lonicera japonica HOM05D005338 ORTHO05D006550 8.1e-75 284.3 173 82.1
SHI19279 Sapria himalayana HOM05D005338 ORTHO05D006550 1.4e-74 283.5 201 73.1
Pp3c14_750 Physcomitrium patens HOM05D005338 ORTHO05D006550 1.5e-68 263.5 219 57.5
Mapoly0023s0045 Marchantia polymorpha HOM05D005338 ORTHO05D006550 3.6e-67 258.8 210 61.9
SMO236G0045 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 9.0e-66 254.2 210 60.5
SalBow1G1231 Salvia bowleyana HOM05D005338 ORTHO05D006550 2.6e-65 252.7 218 67.4
TAR628G0003 Trochodendron aralioides HOM05D005338 ORTHO05D006550 3.6e-59 232.3 145 80.7
AagrBONN_evm.TU.Sc2ySwM_362.1720 Anthoceros agrestis HOM05D005338 ORTHO05D006550 1.4e-58 230.3 210 55.7
AUR62040070 Chenopodium quinoa HOM05D005338 ORTHO05D006550 1.8e-58 229.9 139 81.3
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 5.5e-55 218.4 212 56.6
RcHm_v2.0_Chr7g0238911 Rosa chinensis HOM05D005338 ORTHO05D006550 7.1e-55 218.0 176 67.6
Sc15g0006680 Simmondsia chinensis HOM05D005338 ORTHO05D006550 7.1e-55 218.0 145 78.6
Hma1.2p1_0023F.1_g015170 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 4.8e-51 205.3 168 68.5
RcHm_v2.0_Chr5g0034471 Rosa chinensis HOM05D005338 ORTHO05D006550 3.8e-48 195.7 125 79.2
RcHm_v2.0_Chr7g0238871 Rosa chinensis HOM05D005338 ORTHO05D006550 1.9e-47 193.4 110 82.7
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 4.6e-46 188.7 215 50.7
Sopen00g003620 Solanum pennellii HOM05D005338 ORTHO05D006550 3.4e-41 172.6 172 55.2
SMO236G0041 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 5.9e-41 171.8 162 54.9
Sopen03g021680 Solanum pennellii HOM05D005338 ORTHO05D006550 6.9e-34 148.3 215 44.2
RcHm_v2.0_Chr7g0238881 Rosa chinensis HOM05D005338 ORTHO05D006550 7.7e-33 144.8 91 83.5
TPR.G5804 Trifolium pratense HOM05D005338 ORTHO05D006550 6.1e-30 135.2 84 81.0
Atru.chr1.3597 Acer truncatum HOM05D005338 ORTHO05D006550 6.9e-26 121.7 81 82.7
Atru.chr12.488 Acer truncatum HOM05D005338 ORTHO05D006550 2.2e-16 90.1 45 93.3
BcaC04g23293 Brassica carinata HOM05D005338 ORTHO05D006550 2.9e-16 89.7 56 75.0
TAR628G1182 Trochodendron aralioides HOM05D005338 ORTHO05D006550 2.9e-16 89.7 46 89.1
SEGI_27973 Sequoiadendron giganteum HOM05D005338 ORTHO05D006550 1.9e-15 87.0 53 73.6
BraA09t41155Z Brassica rapa HOM05D005338 ORTHO05D006550 1.4e-13 80.9 66 66.7
MD08G1183200 Malus domestica HOM05D005338 ORTHO05D006550 2.0e-12 77.0 216 35.2
C08p40830 Brassica napus HOM05D005338 ORTHO05D006550 1.0e-08 64.7 34 91.2
BolC8t51648H Brassica oleracea HOM05D005338 ORTHO05D006550 2.9e-08 63.2 34 91.2
Lj4A782T80 Lonicera japonica HOM05D005338 ORTHO05D234559 2.7e-06 56.6 34 100.0


User provided reference genes

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