Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.5IY6XE Arachis hypogaea HOM05D005043 ORTHO05D006182 3.7e-108 394.8 191 100.0
arahy.Tifrunner.gnm1.ann1.3VV2Z3 Arachis hypogaea HOM05D005043 ORTHO05D006182 2.6e-101 372.1 210 88.1
Glyma.06G229100 Glycine max HOM05D005043 ORTHO05D006182 1.8e-78 296.2 208 72.6
TPR.G12585 Trifolium pratense HOM05D005043 ORTHO05D006182 3.1e-78 295.4 204 73.5
Lalb_Chr03g0031161 Lupinus albus HOM05D005043 ORTHO05D006182 1.2e-77 293.5 212 70.3
Lalb_Chr19g0133801 Lupinus albus HOM05D005043 ORTHO05D006182 1.2e-77 293.5 209 71.3
Medtr6g466500 Medicago truncatula HOM05D005043 ORTHO05D006182 2.0e-77 292.7 216 69.4
arahy.Tifrunner.gnm1.ann1.NUK3H0 Arachis hypogaea HOM05D005043 ORTHO05D006182 2.6e-77 292.4 217 70.0
CANSAT35G1445 Cannabis sativa HOM05D005043 ORTHO05D006182 2.6e-77 292.4 205 72.2
Glyma.12G157700 Glycine max HOM05D005043 ORTHO05D006182 3.4e-77 292.0 208 71.6
arahy.Tifrunner.gnm1.ann1.5E18AM Arachis hypogaea HOM05D005043 ORTHO05D006182 5.8e-77 291.2 223 68.2
GSVIVG01014196001 Vitis vinifera HOM05D005043 ORTHO05D006182 7.6e-77 290.8 176 80.1
Duzib213G0837 Durio zibethinus HOM05D005043 ORTHO05D006182 9.9e-77 290.4 208 69.7
Ca_26224_v3 Cicer arietinum L. HOM05D005043 ORTHO05D006182 1.3e-76 290.0 204 71.6
Thecc.07G117100 Theobroma cacao HOM05D005043 ORTHO05D006182 2.9e-76 288.9 208 69.7
COL.COLO4_17542 Corchorus olitorius HOM05D005043 ORTHO05D006182 3.8e-76 288.5 208 70.7
Prupe.4G164600 Prunus persica HOM05D005043 ORTHO05D006182 3.8e-76 288.5 205 70.7
Phvul.011G162300 Phaseolus vulgaris HOM05D005043 ORTHO05D006182 6.4e-76 287.7 204 72.1
FvH4_3g18270 Fragaria vesca HOM05D005043 ORTHO05D006182 2.4e-75 285.8 205 69.8
FAN11G3478 Fragaria x ananassa HOM05D005043 ORTHO05D006182 2.4e-75 285.8 205 69.8
FAN21G3659 Fragaria x ananassa HOM05D005043 ORTHO05D006182 2.4e-75 285.8 205 69.8
Nn7g37328 Nelumbo nucifera HOM05D005043 ORTHO05D006182 4.2e-75 285.0 202 71.3
MD11G1263900 Malus domestica HOM05D005043 ORTHO05D006182 5.4e-75 284.6 205 69.8
FAN16G3394 Fragaria x ananassa HOM05D005043 ORTHO05D006182 7.1e-75 284.3 205 69.3
RcHm_v2.0_Chr5g0030901 Rosa chinensis HOM05D005043 ORTHO05D006182 9.3e-75 283.9 208 67.8
FAN25G1853 Fragaria x ananassa HOM05D005043 ORTHO05D006182 1.2e-74 283.5 205 69.3
Hma1.2p1_0290F.1_g114850 Hydrangea macrophylla HOM05D005043 ORTHO05D006182 2.1e-74 282.7 202 68.3
HanXRQChr13g0390281 Helianthus annuus HOM05D005043 ORTHO05D006182 3.5e-74 282.0 176 77.8
Ciclev10023741m.g Citrus clementina HOM05D005043 ORTHO05D006182 1.0e-73 280.4 206 68.0
TAR636G1993 Trochodendron aralioides HOM05D005043 ORTHO05D006182 1.0e-73 280.4 202 68.8
AL3G27210 Arabidopsis lyrata HOM05D005043 ORTHO05D006182 1.3e-73 280.0 206 68.9
Cpa.g.sc77.9 Carica papaya HOM05D005043 ORTHO05D006182 1.3e-73 280.0 205 67.8
MSTRG.12865 Avicennia marina HOM05D005043 ORTHO05D006182 1.7e-73 279.6 173 78.0
HanXRQChr12g0362951 Helianthus annuus HOM05D005043 ORTHO05D006182 1.7e-73 279.6 206 68.4
Gohir.A01G054300 Gossypium hirsutum HOM05D005043 ORTHO05D006182 2.3e-73 279.3 205 66.8
PGR083G1657 Punica granatum HOM05D005043 ORTHO05D006182 2.3e-73 279.3 205 67.3
vmacro11941 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 2.3e-73 279.3 203 67.0
vmacro23467 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 2.3e-73 279.3 203 67.0
CiPaw.11G160200 Carya illinoinensis HOM05D005043 ORTHO05D006182 3.0e-73 278.9 205 67.8
CsaV3_4G033100 Cucumis sativus L. HOM05D005043 ORTHO05D006182 3.0e-73 278.9 173 76.3
Gohir.D01G042722 Gossypium hirsutum HOM05D005043 ORTHO05D006182 3.0e-73 278.9 205 66.8
Gorai.002G054600 Gossypium raimondii HOM05D005043 ORTHO05D006182 3.0e-73 278.9 205 66.8
CDE09G1444 Ceratophyllum demersum HOM05D005043 ORTHO05D006182 5.1e-73 278.1 202 69.3
Dinv18365 Davidia involucrata HOM05D005043 ORTHO05D006182 5.1e-73 278.1 206 68.0
ECA240G3232 Erigeron canadensis HOM05D005043 ORTHO05D006182 1.1e-72 276.9 176 77.3
Aa31LG8G2100 Aethionema arabicum HOM05D005043 ORTHO05D006182 2.5e-72 275.8 205 67.3
Lj1C829T6 Lonicera japonica HOM05D005043 ORTHO05D006182 2.5e-72 275.8 205 66.3
Sabra16G0255900 Salix brachista HOM05D005043 ORTHO05D006182 2.5e-72 275.8 205 66.8
Cc05_g11070 Coffea canephora HOM05D005043 ORTHO05D006182 4.3e-72 275.0 208 65.9
Carub.0003s1455 Capsella rubella HOM05D005043 ORTHO05D006182 5.6e-72 274.6 205 67.8
Potri.001G390500 Populus trichocarpa HOM05D005043 ORTHO05D006182 7.3e-72 274.2 205 66.8
Rhsim06G0208200 Rhododendron simsii HOM05D005043 ORTHO05D006182 7.3e-72 274.2 205 66.3
AT3G14890 Arabidopsis thaliana HOM05D005043 ORTHO05D006182 9.6e-72 273.9 206 67.5
ClCG11G017440 Citrullus lanatus HOM05D005043 ORTHO05D006182 9.6e-72 273.9 173 73.4
BcaB06g29516 Brassica carinata HOM05D005043 ORTHO05D006182 1.3e-71 273.5 205 66.8
A05p34520 Brassica napus HOM05D005043 ORTHO05D006182 1.3e-71 273.5 205 66.8
BraA05t22272Z Brassica rapa HOM05D005043 ORTHO05D006182 1.3e-71 273.5 205 66.8
BolC3t17001H Brassica oleracea HOM05D005043 ORTHO05D006182 1.6e-71 273.1 205 67.3
Lsat_1_v5_gn_9_99860 Lactuca sativa HOM05D005043 ORTHO05D006182 2.8e-71 272.3 174 77.0
Migut.M00727 Erythranthe guttata HOM05D005043 ORTHO05D006182 3.6e-71 271.9 173 76.9
Oeu031030.1 Olea europaea HOM05D005043 ORTHO05D006182 3.6e-71 271.9 202 68.3
C03p47310 Brassica napus HOM05D005043 ORTHO05D006182 4.8e-71 271.6 205 66.8
A03p39040 Brassica napus HOM05D005043 ORTHO05D006182 6.2e-71 271.2 205 66.3
BraA03t13053Z Brassica rapa HOM05D005043 ORTHO05D006182 6.2e-71 271.2 205 66.3
Manes.15G094900 Manihot esculenta HOM05D005043 ORTHO05D006182 6.2e-71 271.2 202 66.8
Sp3g13100 Schrenkiella parvula HOM05D005043 ORTHO05D006182 8.1e-71 270.8 202 67.8
Atru.chr2.2132 Acer truncatum HOM05D005043 ORTHO05D006182 1.1e-70 270.4 176 73.9
BolC5t33915H Brassica oleracea HOM05D005043 ORTHO05D006182 1.1e-70 270.4 203 67.0
Haze_09322 Corylus avellana HOM05D005043 ORTHO05D006182 1.1e-70 270.4 205 66.8
Thhalv10020510m.g Eutrema salsugineum HOM05D005043 ORTHO05D006182 1.1e-70 270.4 173 74.0
DCAR_017172 Daucus carota HOM05D005043 ORTHO05D006182 1.4e-70 270.0 172 75.0
BcaB06g25330 Brassica carinata HOM05D005043 ORTHO05D006182 2.4e-70 269.2 205 66.3
TWI38G0078 Tripterygium wilfordii HOM05D005043 ORTHO05D006182 2.4e-70 269.2 205 64.9
C05p52260 Brassica napus HOM05D005043 ORTHO05D006182 3.1e-70 268.9 206 66.5
CARHR089830 Cardamine hirsuta HOM05D005043 ORTHO05D006182 6.9e-70 267.7 173 75.1
PSO384G1010 Papaver somniferum HOM05D005043 ORTHO05D006182 2.6e-69 265.8 173 74.6
Sed0006465 Sechium edule HOM05D005043 ORTHO05D006182 4.5e-69 265.0 206 64.1
PSO478G3490 Papaver somniferum HOM05D005043 ORTHO05D006182 9.9e-69 263.8 173 74.0
PSO782G2110 Papaver somniferum HOM05D005043 ORTHO05D006182 9.9e-69 263.8 173 74.6
THA.LOC104822566 Tarenaya hassleriana HOM05D005043 ORTHO05D006182 1.7e-68 263.1 201 65.7
EL10Ac4g08345 Beta vulgaris HOM05D005043 ORTHO05D006182 2.9e-68 262.3 180 71.1
Eucgr.F01242 Eucalyptus grandis HOM05D005043 ORTHO05D006182 8.4e-68 260.8 173 71.1
Peaxi162Scf00111g01457 Petunia axillaris HOM05D005043 ORTHO05D006182 2.4e-67 259.2 174 71.8
unitig_749.g13541 Utricularia gibba HOM05D005043 ORTHO05D006182 2.4e-67 259.2 173 72.3
SGA_v2.0_scaffold70G23376 Striga asiatica HOM05D005043 ORTHO05D006182 4.2e-67 258.5 185 71.4
Sopen07g030670 Solanum pennellii HOM05D005043 ORTHO05D006182 5.4e-67 258.1 174 72.4
Solyc07g062430.3 Solanum lycopersicum HOM05D005043 ORTHO05D006182 2.7e-66 255.8 203 63.5
CAN.G375.16 Capsicum annuum HOM05D005043 ORTHO05D006182 6.0e-66 254.6 173 72.3
PGSC0003DMG400007070 Solanum tuberosum HOM05D005043 ORTHO05D006182 1.0e-65 253.8 180 70.6
vmacro23385 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 1.3e-65 253.4 204 61.8
SalBow8G1024 Salvia bowleyana HOM05D005043 ORTHO05D006182 3.9e-65 251.9 169 75.1
VMungo1127G0129 Vigna mungo HOM05D005043 ORTHO05D006182 1.9e-64 249.6 292 50.0
Aqoxy7G03872 Aquilegia oxysepala HOM05D005043 ORTHO05D006182 3.3e-64 248.8 205 60.5
AUR62019576 Chenopodium quinoa HOM05D005043 ORTHO05D006182 9.6e-64 247.3 194 64.4
QL08p026231 Quercus lobata HOM05D005043 ORTHO05D006182 1.3e-63 246.9 146 80.1
HPP92_009836 Vanilla planifolia HOM05D005043 ORTHO05D006182 2.8e-63 245.7 172 69.2
MBI06_g29324_MAGBIO Magnolia biondii HOM05D005043 ORTHO05D006182 9.0e-62 240.7 283 48.8
Lj3g0009561 Lotus japonicus HOM05D005043 ORTHO05D006182 3.5e-58 228.8 170 68.8
AUR62042780 Chenopodium quinoa HOM05D005043 ORTHO05D006182 3.0e-57 225.7 145 73.1
Thecc.07G116500 Theobroma cacao HOM05D005043 ORTHO05D006182 3.0e-57 225.7 141 77.3
SMO137G0206 Selaginella moellendorffii HOM05D005043 ORTHO05D006182 5.1e-57 224.9 183 60.7
Pp3c6_17140 Physcomitrium patens HOM05D005043 ORTHO05D006182 1.8e-54 216.5 172 61.0
SalBow1G3547 Salvia bowleyana HOM05D005043 ORTHO05D006182 2.0e-53 213.0 169 66.3
Mapoly0056s0069 Marchantia polymorpha HOM05D005043 ORTHO05D006182 3.2e-51 205.7 174 57.5
Os01g0737300 Oryza sativa ssp. japonica HOM05D005043 ORTHO05D006182 1.2e-50 203.8 136 72.1
ATR1131G028 Amborella trichopoda HOM05D005043 ORTHO05D006182 1.0e-49 200.7 168 58.9
MELO3C025641.2 Cucumis melo HOM05D005043 ORTHO05D006182 1.0e-49 200.7 173 61.3
CBR_g66772 Chara braunii HOM05D005043 ORTHO05D006182 3.1e-46 189.1 166 56.0
Ah.04g164250 Amaranthus hybridus HOM05D005043 ORTHO05D006182 7.2e-43 177.9 119 73.1
AagrBONN_evm.TU.Sc2ySwM_228.1872 Anthoceros agrestis HOM05D005043 ORTHO05D006182 1.9e-40 169.9 132 59.8
Hma1.2p1_0113F.1_g055130 Hydrangea macrophylla HOM05D005043 ORTHO05D006182 3.3e-32 142.5 93 75.3
Psat3g077040 Pisum sativum HOM05D005043 ORTHO05D006182 4.8e-31 138.7 134 56.0
Sc16g0007590 Simmondsia chinensis HOM05D005043 ORTHO05D006182 1.0e-28 131.0 127 55.1
Nitab4.5_0003565g0060 Nicotiana tabacum HOM05D005043 ORTHO05D006182 5.2e-25 118.6 86 65.1
Nitab4.5_0006953g0040 Nicotiana tabacum HOM05D005043 ORTHO05D006182 5.2e-25 118.6 173 41.6
Cre09.g388726 Chlamydomonas reinhardtii HOM05D005043 ORTHO05D006182 1.5e-24 117.1 190 37.9
MCO04G542 Micromonas commoda HOM05D005043 ORTHO05D006182 2.6e-24 116.3 180 39.4
SHI37131 Sapria himalayana HOM05D005043 ORTHO05D006182 7.7e-21 104.8 65 75.4
PRCOL_00001017 Prasinoderma coloniale HOM05D005043 ORTHO05D006182 2.7e-18 96.3 171 36.3
arahy.Tifrunner.gnm1.ann1.SEI0XU Arachis hypogaea HOM05D000735 ORTHO05D000838 1.2e-16 90.9 59 71.2
CSS0012296 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 9.4e-11 71.2 37 86.5
Medtr6g464930 Medicago truncatula HOM05D005043 ORTHO05D006182 2.1e-10 70.1 47 66.0
SMO175G0006 Selaginella moellendorffii HOM05D017119 ORTHO05D006182 2.2e-07 60.1 50 52.0
RcHm_v2.0_Chr1g0352751 Rosa chinensis HOM05D005043 ORTHO05D006182 4.1e-06 55.8 33 69.7


User provided reference genes

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