Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 3.3e-165 585.1 320 100.0
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 1.2e-154 550.1 312 97.4
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 5.8e-154 547.7 312 97.1
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 7.5e-154 547.4 312 97.1
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 8.3e-153 543.9 312 96.2
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 2.5e-133 479.2 316 85.8
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 2.5e-133 479.2 316 86.1
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 7.3e-133 477.6 316 85.8
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 2.1e-132 476.1 316 84.5
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 2.4e-131 472.6 316 85.4
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 2.4e-131 472.6 322 82.3
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 6.0e-127 458.0 316 81.0
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 1.6e-124 449.9 336 77.4
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 4.8e-124 448.4 313 83.7
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 6.9e-123 444.5 317 79.8
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 4.5e-122 441.8 313 82.4
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 2.9e-121 439.1 315 82.2
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 2.9e-121 439.1 328 78.0
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 1.4e-120 436.8 313 82.7
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 1.2e-119 433.7 313 83.4
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 4.3e-117 425.2 316 76.9
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 1.2e-114 417.2 316 78.5
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 2.1e-111 406.4 315 75.9
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 2.7e-111 406.0 318 75.2
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 1.5e-109 400.2 259 82.2
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 2.8e-108 396.0 294 77.6
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 4.8e-108 395.2 317 72.2
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 8.1e-108 394.4 317 71.9
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 8.1e-108 394.4 314 72.9
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 1.1e-107 394.0 318 72.6
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 1.4e-107 393.7 325 71.4
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 1.8e-107 393.3 319 72.7
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 2.4e-107 392.9 317 75.1
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 5.3e-107 391.7 317 75.7
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 5.3e-107 391.7 326 70.2
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 5.3e-107 391.7 318 72.3
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 2.6e-106 389.4 320 72.5
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 2.6e-106 389.4 322 72.4
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 4.5e-106 388.7 325 72.0
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 6.5e-105 384.8 316 72.8
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 8.4e-105 384.4 318 69.8
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 8.4e-105 384.4 328 71.3
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 1.9e-104 383.3 323 70.6
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 1.9e-104 383.3 318 71.7
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 2.5e-104 382.9 324 69.8
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 9.3e-104 380.9 324 70.4
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 2.1e-103 379.8 323 72.4
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 2.7e-103 379.4 324 70.1
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 6.7e-102 374.8 324 67.9
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 8.7e-102 374.4 300 74.7
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 1.1e-101 374.0 322 70.2
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 9.6e-101 370.9 317 69.7
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 3.7e-100 369.0 325 67.4
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 3.1e-99 365.9 316 69.6
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 3.1e-99 365.9 316 69.6
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 6.9e-99 364.8 318 67.0
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 9.0e-99 364.4 321 70.4
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.2e-98 364.0 318 67.0
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 1.2e-98 364.0 315 68.9
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 4.5e-98 362.1 318 66.7
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 4.5e-98 362.1 318 65.4
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 4.5e-98 362.1 321 66.4
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 7.6e-98 361.3 324 66.7
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 1.0e-97 360.9 318 65.4
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.7e-97 360.1 319 66.5
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 2.2e-97 359.8 315 68.6
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.8e-97 359.0 318 66.4
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 3.8e-97 359.0 316 69.0
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 5.0e-97 358.6 315 68.9
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 1.9e-96 356.7 314 68.8
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 1.9e-96 356.7 315 67.9
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 3.2e-96 355.9 315 67.6
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 5.5e-96 355.1 318 66.7
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 5.5e-96 355.1 316 68.4
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 7.2e-96 354.8 314 66.9
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 9.3e-96 354.4 315 67.6
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 6.1e-95 351.7 319 66.5
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 7.9e-95 351.3 314 67.5
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 1.0e-94 350.9 327 64.2
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 1.3e-94 350.5 314 66.6
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 1.8e-94 350.1 326 64.4
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 3.0e-94 349.4 320 68.1
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 5.1e-94 348.6 311 67.2
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 5.1e-94 348.6 315 67.0
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 8.7e-94 347.8 328 65.5
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 1.5e-93 347.1 315 66.0
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 1.5e-93 347.1 318 65.7
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 1.5e-93 347.1 325 64.3
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 1.5e-93 347.1 320 68.8
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.5e-93 347.1 315 67.3
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 2.5e-93 346.3 315 67.0
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 2.5e-93 346.3 313 66.8
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 5.7e-93 345.1 316 66.5
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 7.4e-93 344.7 323 65.0
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 9.7e-93 344.4 320 64.7
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 9.7e-93 344.4 317 67.8
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 9.7e-93 344.4 317 67.8
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 9.7e-93 344.4 320 65.3
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 9.7e-93 344.4 320 67.2
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 9.7e-93 344.4 315 67.3
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 9.7e-93 344.4 318 65.7
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 1.6e-92 343.6 320 63.4
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.6e-92 343.6 317 64.7
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 2.2e-92 343.2 316 66.1
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 4.8e-92 342.0 314 64.0
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 8.2e-92 341.3 316 66.8
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 8.2e-92 341.3 316 67.1
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 1.1e-91 340.9 314 67.2
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 6.9e-91 338.2 318 64.2
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 4.5e-90 335.5 315 66.7
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 7.7e-90 334.7 320 65.0
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 6.5e-89 331.6 327 62.7
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 3.2e-88 329.3 308 67.5
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 2.7e-87 326.2 320 62.8
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 3.0e-86 322.8 317 64.4
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 3.0e-86 322.8 326 62.6
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 1.8e-83 313.5 313 62.3
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 2.0e-77 293.5 315 58.1
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 1.7e-76 290.4 335 57.0
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 7.7e-74 281.6 315 54.3
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 7.7e-74 281.6 317 54.9
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 1.7e-73 280.4 325 56.3
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 7.2e-72 275.0 325 56.0
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 7.5e-69 265.0 267 58.1
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 1.6e-63 247.3 258 55.8
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 4.7e-63 245.7 331 48.0
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 6.1e-63 245.4 262 55.0
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 3.4e-61 239.6 267 52.1
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.6e-58 230.7 223 67.3
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 1.6e-58 230.7 330 46.7
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 6.5e-57 225.3 309 50.8
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 2.0e-53 213.8 266 54.9
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 4.7e-47 192.6 193 58.5
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.2e-44 183.7 173 61.3
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 4.9e-44 182.6 173 61.3
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 6.6e-41 172.2 245 53.1
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 6.6e-41 172.2 245 53.1
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 3.3e-40 169.9 307 46.3
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 5.6e-40 169.1 151 65.6
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 8.0e-39 165.2 259 40.5
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 1.3e-36 157.9 192 52.1
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 1.7e-36 157.5 109 78.0
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 9.2e-35 151.8 321 38.0
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 1.3e-33 147.9 147 57.1
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 1.2e-31 141.4 187 49.2
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 2.3e-30 137.1 105 74.3
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 1.5e-29 134.4 313 37.1
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 2.6e-29 133.7 325 38.5
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 3.0e-25 120.2 131 64.9
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 1.2e-23 114.8 249 30.1
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 4.0e-22 109.8 145 50.3
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 4.9e-12 76.3 225 27.6
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 1.4e-11 74.7 101 58.4
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 6.6e-09 65.9 117 39.3


User provided reference genes

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