Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.4L0SCR Arachis hypogaea HOM05D007061 ORTHO05D009017 6.5e-65 250.8 144 100.0
arahy.Tifrunner.gnm1.ann1.RLLR5G Arachis hypogaea HOM05D007061 ORTHO05D009017 2.6e-53 212.2 104 100.0
arahy.Tifrunner.gnm1.ann1.69KP4R Arachis hypogaea HOM05D007061 ORTHO05D009017 3.7e-52 208.4 102 100.0
Lalb_Chr03g0031881 Lupinus albus HOM05D007061 ORTHO05D009017 5.2e-46 188.0 104 88.5
Lj3g0003258 Lotus japonicus HOM05D007061 ORTHO05D009017 1.5e-45 186.4 104 86.5
Phvul.011G179100 Phaseolus vulgaris HOM05D007061 ORTHO05D009017 2.0e-45 186.0 104 87.5
Glyma.08G234700 Glycine max HOM05D007061 ORTHO05D009017 4.4e-45 184.9 104 86.5
Ca_23083_v3 Cicer arietinum L. HOM05D007061 ORTHO05D009017 1.3e-44 183.3 104 87.5
Psat4g170560 Pisum sativum HOM05D007061 ORTHO05D009017 1.7e-44 183.0 104 86.5
TPR.G9404 Trifolium pratense HOM05D007061 ORTHO05D009017 7.0e-43 177.6 104 84.6
Hma1.2p1_0151F.1_g067030 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 9.2e-43 177.2 104 83.7
GSVIVG01036723001 Vitis vinifera HOM05D007061 ORTHO05D009017 9.2e-43 177.2 104 81.7
PSO675G0660 Papaver somniferum HOM05D007061 ORTHO05D009017 2.1e-42 176.0 103 81.6
Prupe.4G128300 Prunus persica HOM05D007061 ORTHO05D009017 2.7e-42 175.6 103 83.5
Duzib213G0730 Durio zibethinus HOM05D007061 ORTHO05D009017 6.0e-42 174.5 104 79.8
Actinidia24658 Actinidia chinensis HOM05D007061 ORTHO05D009017 1.0e-41 173.7 104 80.8
MD10G1216400 Malus domestica HOM05D007061 ORTHO05D009017 1.0e-41 173.7 103 83.5
PSO675G3863 Papaver somniferum HOM05D007061 ORTHO05D009017 1.7e-41 172.9 103 80.6
QL04p093744 Quercus lobata HOM05D007061 ORTHO05D009017 1.7e-41 172.9 104 80.8
FvH4_3g14100 Fragaria vesca HOM05D007061 ORTHO05D009017 2.3e-41 172.6 103 82.5
Nn7g38366 Nelumbo nucifera HOM05D007061 ORTHO05D009017 2.3e-41 172.6 104 79.8
ECA240G0752 Erigeron canadensis HOM05D007061 ORTHO05D009017 5.0e-41 171.4 104 78.8
CSS0041382 Camellia sinensis var. sinensis HOM05D007061 ORTHO05D009017 6.6e-41 171.0 104 79.8
CANSAT35G1572 Cannabis sativa HOM05D007061 ORTHO05D009017 1.1e-40 170.2 103 79.6
Gohir.D07G048400 Gossypium hirsutum HOM05D007061 ORTHO05D009017 1.1e-40 170.2 104 78.8
TAR627G0473 Trochodendron aralioides HOM05D007061 ORTHO05D009017 1.1e-40 170.2 104 79.8
CsaV3_6G013460 Cucumis sativus L. HOM05D007061 ORTHO05D009017 1.5e-40 169.9 104 78.8
Potri.010G173800 Populus trichocarpa HOM05D007061 ORTHO05D009017 1.9e-40 169.5 104 78.8
CiPaw.11G057200 Carya illinoinensis HOM05D007061 ORTHO05D009017 3.3e-40 168.7 104 76.9
Gorai.001G051600 Gossypium raimondii HOM05D007061 ORTHO05D009017 4.3e-40 168.3 104 77.9
Ciclev10004974m.g Citrus clementina HOM05D007061 ORTHO05D009017 5.6e-40 167.9 103 78.6
HanXRQChr03g0080291 Helianthus annuus HOM05D007061 ORTHO05D009017 5.6e-40 167.9 104 76.9
Migut.M01505 Erythranthe guttata HOM05D007061 ORTHO05D009017 9.5e-40 167.2 103 78.6
Aqoxy2G00253 Aquilegia oxysepala HOM05D007061 ORTHO05D009017 1.2e-39 166.8 104 76.0
Gohir.A07G044000 Gossypium hirsutum HOM05D007061 ORTHO05D009017 1.6e-39 166.4 104 77.9
PGR044G2241 Punica granatum HOM05D007061 ORTHO05D009017 1.6e-39 166.4 103 77.7
Lsat_1_v5_gn_7_70001 Lactuca sativa HOM05D007061 ORTHO05D009017 2.1e-39 166.0 105 78.1
ATR0763G190 Amborella trichopoda HOM05D007061 ORTHO05D009017 2.8e-39 165.6 104 75.0
Cpa.g.sc32.92 Carica papaya HOM05D007061 ORTHO05D009017 2.8e-39 165.6 104 76.9
Eucgr.K03462 Eucalyptus grandis HOM05D007061 ORTHO05D009017 3.6e-39 165.2 103 75.7
Aa31LG10G30 Aethionema arabicum HOM05D007061 ORTHO05D009017 4.7e-39 164.9 103 76.7
RcHm_v2.0_Chr5g0023411 Rosa chinensis HOM05D007061 ORTHO05D009017 6.2e-39 164.5 103 79.6
THA.LOC104810275 Tarenaya hassleriana HOM05D007061 ORTHO05D009017 8.1e-39 164.1 103 74.8
BcaC05g28094 Brassica carinata HOM05D007061 ORTHO05D009017 1.4e-38 163.3 103 76.7
A05p26620 Brassica napus HOM05D007061 ORTHO05D009017 1.4e-38 163.3 103 76.7
C05p41210 Brassica napus HOM05D007061 ORTHO05D009017 1.4e-38 163.3 103 76.7
BraA05t21537Z Brassica rapa HOM05D007061 ORTHO05D009017 1.4e-38 163.3 103 76.7
ClCG02G018710 Citrullus lanatus HOM05D007061 ORTHO05D009017 1.4e-38 163.3 120 70.8
AL1G64530 Arabidopsis lyrata HOM05D007061 ORTHO05D009017 3.1e-38 162.2 103 75.7
BcaB02g10820 Brassica carinata HOM05D007061 ORTHO05D009017 3.1e-38 162.2 103 75.7
CARHR045980 Cardamine hirsuta HOM05D007061 ORTHO05D009017 4.0e-38 161.8 103 74.8
Sabra10G0133700 Salix brachista HOM05D007061 ORTHO05D009017 4.0e-38 161.8 112 72.3
Sp1g41850 Schrenkiella parvula HOM05D007061 ORTHO05D009017 4.0e-38 161.8 103 74.8
Carub.0001s4486 Capsella rubella HOM05D007061 ORTHO05D009017 5.2e-38 161.4 103 73.8
Lj2A10G39 Lonicera japonica HOM05D007061 ORTHO05D009017 5.2e-38 161.4 107 74.8
Os02g0173700 Oryza sativa ssp. japonica HOM05D007061 ORTHO05D009017 5.2e-38 161.4 103 73.8
Zm00001eb233280 Zea mays HOM05D007061 ORTHO05D009017 6.8e-38 161.0 103 74.8
HPP92_028078 Vanilla planifolia HOM05D007061 ORTHO05D009017 1.5e-37 159.8 104 73.1
Thhalv10011478m.g Eutrema salsugineum HOM05D007061 ORTHO05D009017 2.6e-37 159.1 103 73.8
Manes.16G047900 Manihot esculenta HOM05D007061 ORTHO05D009017 4.4e-37 158.3 109 70.6
unitig_37.g12195 Utricularia gibba HOM05D007061 ORTHO05D009017 4.1e-35 151.8 103 70.9
vmacro11681 Vaccinium macrocarpon HOM05D007061 ORTHO05D009017 3.3e-32 142.1 153 51.6
AagrBONN_evm.TU.Sc2ySwM_228.3482 Anthoceros agrestis HOM05D007061 ORTHO05D009017 4.0e-30 135.2 104 61.5
Pp3c22_13410 Physcomitrium patens HOM05D007061 ORTHO05D009017 5.2e-30 134.8 103 63.1
SalBow8G1251 Salvia bowleyana HOM05D007061 ORTHO05D009017 5.8e-29 131.3 83 78.3
SMO145G0248 Selaginella moellendorffii HOM05D007061 ORTHO05D009017 6.4e-28 127.9 104 60.6
Mapoly0013s0085 Marchantia polymorpha HOM05D007061 ORTHO05D009017 5.4e-27 124.8 95 63.2
MD05G1238000 Malus domestica HOM05D007061 ORTHO05D009017 1.7e-25 119.8 72 81.9
FAN11G3441 Fragaria x ananassa HOM05D007061 ORTHO05D009017 3.0e-25 119.0 75 77.3
Cc05_g16540 Coffea canephora HOM05D007061 ORTHO05D009017 2.5e-24 115.9 74 74.3
Cre16.g649400 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 6.2e-23 111.3 103 53.4
DCAR_009658 Daucus carota HOM05D007061 ORTHO05D009017 1.2e-21 107.1 69 75.4
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 9.9e-21 104.0 103 54.4
MCO09G574 Micromonas commoda HOM05D007061 ORTHO05D009017 1.1e-19 100.5 96 50.0
PRCOL_00003223 Prasinoderma coloniale HOM05D007061 ORTHO05D009017 3.5e-18 95.5 92 48.9
Rhsim06G0244100 Rhododendron simsii HOM05D007061 ORTHO05D009017 1.1e-14 84.0 105 46.7
Nitab4.5_0002862g0050 Nicotiana tabacum HOM05D007061 ORTHO05D009017 6.9e-14 81.3 104 46.2
COL.COLO4_24973 Corchorus olitorius HOM05D007061 ORTHO05D009017 9.0e-14 80.9 104 45.2
Peaxi162Scf00452g00232 Petunia axillaris HOM05D007061 ORTHO05D009017 1.5e-13 80.1 104 46.2
CAN.G943.59 Capsicum annuum HOM05D007061 ORTHO05D009017 2.0e-13 79.7 103 45.6
Nitab4.5_0000029g0190 Nicotiana tabacum HOM05D007061 ORTHO05D009017 2.0e-13 79.7 103 45.6
SGA_v2.0_scaffold186G40180 Striga asiatica HOM05D007061 ORTHO05D009017 2.6e-13 79.3 103 47.6
FAN16G1770 Fragaria x ananassa HOM05D007061 ORTHO05D009017 3.4e-13 79.0 113 48.7
FAN25G0842 Fragaria x ananassa HOM05D007061 ORTHO05D009017 6.4e-12 74.7 103 44.7
Manes.04G057176 Manihot esculenta HOM05D007061 ORTHO05D005365 1.3e-09 67.0 45 71.1
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 5.1e-09 65.1 46 73.9
SalBow8G1458 Salvia bowleyana HOM05D007061 ORTHO05D009017 1.5e-08 63.5 32 87.5
Cre09.g407900 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 6.2e-07 58.2 96 38.5


User provided reference genes

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