Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.3WU3U6 Arachis hypogaea HOM05D000806 ORTHO05D002320 3.7e-67 258.1 130 100.0
arahy.Tifrunner.gnm1.ann1.0T2FMW Arachis hypogaea HOM05D000445 ORTHO05D000314 2.0e-60 235.7 118 99.2
arahy.Tifrunner.gnm1.ann1.J4M97S Arachis hypogaea HOM05D000806 ORTHO05D002320 2.9e-56 221.9 118 92.4
LjContig00318g0000728 Lotus japonicus HOM05D000806 ORTHO05D002320 3.0e-32 142.1 118 67.8
Hma1.2p1_0355F.1_g133926 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 1.8e-29 132.9 117 61.5
CSS0050017 Camellia sinensis var. sinensis HOM05D000806 ORTHO05D002320 4.9e-27 124.8 117 59.8
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 3.0e-24 115.5 118 57.6
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 3.0e-24 115.5 118 56.8
arahy.Tifrunner.gnm1.ann1.HP88CG Arachis hypogaea HOM05D000806 ORTHO05D002320 1.5e-23 113.2 55 100.0
PGR111G0026 Punica granatum HOM05D000806 ORTHO05D002320 1.9e-23 112.8 116 57.8
Nn010s41432 Nelumbo nucifera HOM05D000806 ORTHO05D002320 4.3e-23 111.7 117 56.4
Potri.013G162600 Populus trichocarpa HOM05D000806 ORTHO05D002320 5.6e-23 111.3 117 54.7
DCAR_032493 Daucus carota HOM05D000806 ORTHO05D002320 1.2e-22 110.2 121 55.4
PSO548G0072 Papaver somniferum HOM05D000806 ORTHO05D002320 2.1e-22 109.4 117 53.8
RcHm_v2.0_Chr5g0042991 Rosa chinensis HOM05D000806 ORTHO05D002320 3.6e-22 108.6 117 55.6
MELO3C000334.2 Cucumis melo HOM05D000806 ORTHO05D002320 4.7e-22 108.2 117 57.3
MELO3C028653.2 Cucumis melo HOM05D000806 ORTHO05D002320 4.7e-22 108.2 117 57.3
RcHm_v2.0_CPg0502101 Rosa chinensis HOM05D000806 ORTHO05D002320 4.7e-22 108.2 117 54.7
Eucgr.I02537 Eucalyptus grandis HOM05D000806 ORTHO05D002320 8.1e-22 107.5 125 54.4
Sed0026664 Sechium edule HOM05D000806 ORTHO05D002320 1.1e-21 107.1 117 55.6
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 1.4e-21 106.7 117 53.8
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.4e-21 106.7 117 53.8
Ah.10g027920 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.4e-21 106.7 117 53.8
Ah.10g028630 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.4e-21 106.7 117 53.8
Peaxi162Scf00021g00818 Petunia axillaris HOM05D000806 ORTHO05D002320 8.9e-21 104.0 117 56.4
EL10As15g24118 Beta vulgaris HOM05D001133 ORTHO05D000941 2.6e-20 102.4 108 55.6
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 2.6e-20 102.4 108 55.6
Lj1g0000993 Lotus japonicus HOM05D000806 ORTHO05D002320 4.4e-20 101.7 118 53.4
Nn010s41447 Nelumbo nucifera HOM05D000806 ORTHO05D002320 1.7e-19 99.8 111 50.5
Lsat_1_v5_gn_4_102681 Lactuca sativa HOM05D000806 ORTHO05D002320 2.9e-19 99.0 111 53.2
BolSC29t60465H Brassica oleracea HOM05D000806 ORTHO05D002320 2.4e-18 95.9 118 50.0
BolSC46t60998H Brassica oleracea HOM05D000806 ORTHO05D002320 2.4e-18 95.9 118 50.0
BolSC47t61099H Brassica oleracea HOM05D000806 ORTHO05D002320 2.4e-18 95.9 118 50.0
C09p40220 Brassica napus HOM05D000806 ORTHO05D002320 5.4e-18 94.7 118 50.0
BraA06t25423Z Brassica rapa HOM05D000806 ORTHO05D002320 5.4e-18 94.7 118 50.0
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 5.4e-18 94.7 118 50.0
CARHR282090 Cardamine hirsuta HOM05D000806 ORTHO05D002320 5.4e-18 94.7 116 51.7
CAN.G1183.3 Capsicum annuum HOM05D000806 ORTHO05D002320 9.2e-18 94.0 117 53.8
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 9.2e-18 94.0 117 53.8
CAN.G219.28 Capsicum annuum HOM05D001133 ORTHO05D000941 9.2e-18 94.0 117 53.8
Thhalv10011034m.g Eutrema salsugineum HOM05D000806 ORTHO05D002320 9.2e-18 94.0 118 50.0
CAN.G1012.4 Capsicum annuum HOM05D000806 ORTHO05D002320 1.2e-17 93.6 121 52.1
MELO3C034228.2 Cucumis melo HOM05D000806 ORTHO05D002320 1.2e-17 93.6 117 50.4
HanXRQChr00c0702g0576831 Helianthus annuus HOM05D000806 ORTHO05D002320 1.2e-17 93.6 109 50.5
HanXRQChr01g0020371 Helianthus annuus HOM05D000806 ORTHO05D002320 1.2e-17 93.6 109 50.5
HanXRQChr02g0041561 Helianthus annuus HOM05D000806 ORTHO05D002320 1.2e-17 93.6 109 50.5
HanXRQChr02g0044911 Helianthus annuus HOM05D000806 ORTHO05D002320 1.2e-17 93.6 109 50.5
HanXRQChr08g0210341 Helianthus annuus HOM05D000806 ORTHO05D002320 1.2e-17 93.6 109 50.5
HanXRQChr10g0289251 Helianthus annuus HOM05D000806 ORTHO05D002320 1.2e-17 93.6 109 50.5
HanXRQChr11g0326811 Helianthus annuus HOM05D000806 ORTHO05D002320 1.2e-17 93.6 109 50.5
HanXRQCPg0580021 Helianthus annuus HOM05D000806 ORTHO05D002320 1.2e-17 93.6 109 50.5
HanXRQChr13g0413531 Helianthus annuus HOM05D000806 ORTHO05D002320 1.6e-17 93.2 109 50.5
CAN.G1.10 Capsicum annuum HOM05D000806 ORTHO05D002320 1.0e-16 90.5 117 52.1
AL2G21530 Arabidopsis lyrata HOM05D000806 ORTHO05D002320 1.3e-16 90.1 119 50.4
MELO3C029533.2 Cucumis melo HOM05D000806 ORTHO05D002320 1.3e-16 90.1 97 54.6
ATCG00500 Arabidopsis thaliana HOM05D000806 ORTHO05D002320 6.6e-16 87.8 121 48.8
Solyc00g500065.1 Solanum lycopersicum HOM05D000806 ORTHO05D002320 6.6e-16 87.8 117 50.4
MD02G1049600 Malus domestica HOM05D001133 ORTHO05D000941 8.7e-16 87.4 73 65.8
Sed0009930 Sechium edule HOM05D000806 ORTHO05D002320 1.5e-15 86.7 117 47.9
Gohir.A07G134850 Gossypium hirsutum HOM05D000806 ORTHO05D002320 2.5e-15 85.9 89 53.9
Gohir.A11G156733 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.6e-14 83.2 92 52.2
Gorai.013G138600 Gossypium raimondii HOM05D000806 ORTHO05D002320 1.6e-14 83.2 97 52.6
Gohir.D13G123550 Gossypium hirsutum HOM05D000806 ORTHO05D002320 2.8e-14 82.4 97 52.6
MELO3C031612.2 Cucumis melo HOM05D000806 ORTHO05D002320 4.8e-14 81.6 109 50.5
Migut.L00565 Erythranthe guttata HOM05D000806 ORTHO05D002320 2.4e-13 79.3 84 56.0
MD11G1294900 Malus domestica HOM05D001133 ORTHO05D000941 4.4e-12 75.1 62 62.9
Gohir.D04G129256 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.3e-11 73.6 113 40.7
Migut.D01360 Erythranthe guttata HOM05D000806 ORTHO05D002320 1.6e-09 66.6 61 55.7
EL10As12g24027 Beta vulgaris HOM05D000806 ORTHO05D002320 4.6e-09 65.1 95 45.3
arahy.Tifrunner.gnm1.ann1.92HTUM Arachis hypogaea HOM05D000890 ORTHO05D000697 1.3e-08 63.5 30 96.7
arahy.Tifrunner.gnm1.ann1.48ICNX Arachis hypogaea HOM05D000806 ORTHO05D038833 2.3e-08 62.8 78 48.7
HanXRQChr10g0283541 Helianthus annuus HOM05D000806 ORTHO05D002320 3.0e-08 62.4 131 33.6
Psat0s1152g0040 Pisum sativum HOM05D000806 ORTHO05D002320 2.5e-07 59.3 104 39.4
BolSC47t61125H Brassica oleracea HOM05D000806 ORTHO05D002320 4.3e-07 58.5 59 47.5
Psat0s2754g0160 Pisum sativum HOM05D000806 ORTHO05D002320 9.6e-07 57.4 63 54.0
Psat0s6989g0080 Pisum sativum HOM05D000806 ORTHO05D002320 9.6e-07 57.4 63 54.0
Gohir.D13G043800 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.3e-06 57.0 118 37.3
Lsat_1_v5_gn_4_69480 Lactuca sativa HOM05D000806 ORTHO05D002320 1.3e-06 57.0 89 44.9
Nitab4.5_0009663g0050 Nicotiana tabacum HOM05D000806 ORTHO05D002320 1.3e-06 57.0 49 65.3
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.3e-06 57.0 67 50.7
Sabra10G0056400 Salix brachista HOM05D001133 ORTHO05D000941 6.2e-06 54.7 54 55.6
AL2G20668 Arabidopsis lyrata HOM05D000806 ORTHO05D002320 8.1e-06 54.3 55 52.7


User provided reference genes

Program Settings