Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 2.3e-96 355.5 174 100.0
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 8.4e-91 337.0 174 93.1
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 9.3e-90 333.6 174 92.0
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 3.5e-89 331.6 174 94.8
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 8.5e-67 257.3 177 72.3
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 4.2e-66 255.0 184 69.0
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 2.1e-65 252.7 183 69.4
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 7.9e-65 250.8 184 69.6
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 7.9e-65 250.8 179 70.9
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 5.1e-64 248.1 177 69.5
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 1.9e-63 246.1 176 69.3
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 2.5e-63 245.7 179 69.8
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 2.5e-63 245.7 177 68.4
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 3.3e-63 245.4 179 68.7
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 4.8e-62 241.5 183 68.9
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 4.8e-62 241.5 180 66.1
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 1.4e-61 240.0 185 66.5
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 3.1e-61 238.8 177 67.8
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 1.2e-60 236.9 184 65.8
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 2.0e-60 236.1 185 64.9
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 5.9e-60 234.6 182 64.8
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 7.7e-60 234.2 179 65.9
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 1.0e-59 233.8 189 62.4
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 1.7e-59 233.0 180 64.4
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 1.7e-59 233.0 185 62.7
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 2.2e-59 232.6 179 67.0
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 3.8e-59 231.9 183 62.8
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 3.8e-59 231.9 185 64.9
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 6.5e-59 231.1 179 64.2
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 6.5e-59 231.1 185 62.7
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 8.5e-59 230.7 179 63.7
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 8.5e-59 230.7 185 62.7
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 1.1e-58 230.3 179 63.7
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 3.2e-58 228.8 177 65.0
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 3.2e-58 228.8 179 65.9
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 5.5e-58 228.0 179 65.9
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 5.5e-58 228.0 183 63.4
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 7.2e-58 227.6 184 63.0
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 9.4e-58 227.3 180 60.6
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 1.2e-57 226.9 224 55.4
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 2.1e-57 226.1 184 60.3
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.1e-57 226.1 179 65.4
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 2.1e-57 226.1 180 63.9
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 2.7e-57 225.7 193 56.5
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 3.6e-57 225.3 182 62.6
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 3.6e-57 225.3 180 65.0
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 3.6e-57 225.3 144 76.4
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 3.6e-57 225.3 183 61.2
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 4.7e-57 224.9 151 73.5
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 6.1e-57 224.6 179 65.4
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 6.1e-57 224.6 179 64.8
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 7.9e-57 224.2 182 62.1
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 7.9e-57 224.2 180 63.3
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 1.4e-56 223.4 182 61.0
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 2.3e-56 222.6 179 63.1
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 2.3e-56 222.6 181 62.4
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 2.3e-56 222.6 185 60.0
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 3.0e-56 222.2 131 75.6
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 3.0e-56 222.2 179 62.6
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 5.1e-56 221.5 196 59.7
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 5.1e-56 221.5 162 67.9
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 6.7e-56 221.1 141 70.9
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 6.7e-56 221.1 184 60.3
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 1.5e-55 219.9 129 75.2
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.5e-55 219.9 182 61.0
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 2.0e-55 219.5 192 57.8
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 2.0e-55 219.5 185 59.5
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 4.4e-55 218.4 168 64.3
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 5.7e-55 218.0 134 72.4
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 5.7e-55 218.0 168 64.3
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 7.4e-55 217.6 129 74.4
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 9.7e-55 217.2 184 59.2
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 9.7e-55 217.2 189 59.3
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 9.7e-55 217.2 160 66.9
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 1.3e-54 216.9 182 59.3
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 1.7e-54 216.5 128 74.2
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 2.2e-54 216.1 168 63.7
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 2.2e-54 216.1 185 59.5
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 2.2e-54 216.1 182 61.5
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 2.8e-54 215.7 128 73.4
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 3.7e-54 215.3 159 63.5
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 4.8e-54 214.9 170 60.6
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 4.8e-54 214.9 181 60.8
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 6.3e-54 214.5 129 72.9
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 8.2e-54 214.2 185 58.9
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 1.1e-53 213.8 141 68.8
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 1.1e-53 213.8 128 75.0
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 1.8e-53 213.0 183 57.4
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 4.1e-53 211.8 170 60.0
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 4.1e-53 211.8 179 59.2
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 6.9e-53 211.1 144 68.1
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 6.9e-53 211.1 225 52.4
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 6.9e-53 211.1 131 74.0
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 6.9e-53 211.1 180 61.1
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 6.9e-53 211.1 174 58.6
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 9.1e-53 210.7 161 63.4
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 1.5e-52 209.9 179 56.4
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 1.5e-52 209.9 176 58.0
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 1.5e-52 209.9 150 68.0
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 2.0e-52 209.5 182 59.3
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 5.9e-52 208.0 163 65.0
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 5.9e-52 208.0 131 70.2
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 1.3e-51 206.8 184 57.6
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 1.7e-51 206.5 176 58.5
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.7e-51 206.5 132 71.2
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 8.5e-51 204.1 186 54.8
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 1.1e-50 203.8 162 59.3
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 1.9e-50 203.0 165 60.0
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 7.2e-50 201.1 192 54.7
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 9.4e-50 200.7 192 54.7
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 2.1e-49 199.5 175 56.0
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 4.7e-49 198.4 175 58.9
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 6.1e-49 198.0 246 45.5
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 8.0e-49 197.6 183 57.9
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 3.9e-48 195.3 115 73.0
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 1.1e-47 193.7 180 52.8
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 1.5e-47 193.4 117 71.8
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 1.3e-46 190.3 178 57.3
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 8.2e-46 187.6 270 41.5
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 2.0e-44 183.0 128 65.6
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.5e-44 182.2 158 59.5
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.9e-42 176.4 158 56.3
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 1.2e-41 173.7 118 66.1
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 8.0e-41 171.0 123 61.0
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 2.0e-39 166.4 125 58.4
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 4.4e-39 165.2 124 60.5
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.0e-36 156.4 87 79.3
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 1.1e-34 150.6 153 58.2
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 3.6e-33 145.6 108 66.7
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 4.8e-30 135.2 86 70.9
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 1.6e-28 130.2 72 80.6
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 2.7e-28 129.4 79 70.9
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 2.3e-27 126.3 137 46.0
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 5.0e-27 125.2 80 68.8
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 8.6e-27 124.4 72 72.2
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 3.6e-25 119.0 110 60.0
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 6.1e-25 118.2 65 76.9
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.4e-23 112.5 130 50.8
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 7.0e-21 104.8 113 42.5
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 3.5e-20 102.4 102 45.1
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 1.5e-18 97.1 60 68.3
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 2.0e-12 76.6 83 57.8
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 1.6e-09 67.0 60 53.3
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 4.7e-09 65.5 35 80.0


User provided reference genes

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