Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1D0YR0 Arachis hypogaea HOM05D006975 ORTHO05D008736 8.3e-74 280.4 154 100.0
arahy.Tifrunner.gnm1.ann1.Y91ZV9 Arachis hypogaea HOM05D006975 ORTHO05D008736 1.5e-38 163.3 95 98.9
arahy.Tifrunner.gnm1.ann1.Z9XT7U Arachis hypogaea HOM05D006975 ORTHO05D008736 1.9e-38 162.9 112 87.5
TPR.G2436 Trifolium pratense HOM05D006975 ORTHO05D008736 4.4e-27 125.2 95 72.6
Lalb_Chr02g0143331 Lupinus albus HOM05D006975 ORTHO05D008736 9.3e-25 117.5 95 68.4
Medtr1g112320 Medicago truncatula HOM05D006975 ORTHO05D008736 1.0e-23 114.0 97 66.0
Lj5g0003318 Lotus japonicus HOM05D006975 ORTHO05D008736 1.7e-23 113.2 95 64.2
Phvul.007G020200 Phaseolus vulgaris HOM05D006975 ORTHO05D008736 1.5e-22 110.2 91 62.6
Ca_11200_v3 Cicer arietinum L. HOM05D006975 ORTHO05D008736 6.2e-21 104.8 95 62.1
Glyma.20G108900 Glycine max HOM05D006975 ORTHO05D008736 1.1e-20 104.0 75 70.7
Psat6g231560 Pisum sativum HOM05D006975 ORTHO05D008736 1.7e-18 96.7 94 60.6
VMungo0720G0770 Vigna mungo HOM05D006975 ORTHO05D008736 2.2e-18 96.3 97 59.8
Atru.chr13.277_Atru.chr13.278 Acer truncatum HOM05D006975 ORTHO05D008736 3.5e-16 89.0 90 50.0
Manes.05G146300 Manihot esculenta HOM05D006975 ORTHO05D008736 1.0e-15 87.4 99 51.5
Potri.005G240800 Populus trichocarpa HOM05D006975 ORTHO05D008736 1.3e-15 87.0 92 50.0
Dinv39526 Davidia involucrata HOM05D006975 ORTHO05D008736 1.7e-15 86.7 92 52.2
CSS0026180 Camellia sinensis var. sinensis HOM05D006975 ORTHO05D008736 3.0e-15 85.9 94 51.1
MBI05_g19267_MAGBIO Magnolia biondii HOM05D006975 ORTHO05D008736 3.9e-15 85.5 97 51.5
Sabra05G0186300 Salix brachista HOM05D006975 ORTHO05D008736 5.1e-15 85.1 91 49.5
CSS0040454 Camellia sinensis var. sinensis HOM05D006975 ORTHO05D008736 6.6e-15 84.7 94 50.0
CiPaw.08G066800 Carya illinoinensis HOM05D006975 ORTHO05D008736 1.1e-14 84.0 92 53.3
COL.COLO4_26134 Corchorus olitorius HOM05D006975 ORTHO05D008736 2.5e-14 82.8 94 53.2
MD08G1012000 Malus domestica HOM05D006975 ORTHO05D008736 5.6e-14 81.6 95 49.5
TWI12G0084 Tripterygium wilfordii HOM05D006975 ORTHO05D008736 9.6e-14 80.9 90 48.9
GSVIVG01009926001 Vitis vinifera HOM05D006975 ORTHO05D008736 2.1e-13 79.7 79 57.0
Haze_04763 Corylus avellana HOM05D006975 ORTHO05D008736 6.2e-13 78.2 93 51.6
Actinidia15428 Actinidia chinensis HOM05D006975 ORTHO05D008736 1.1e-12 77.4 71 53.5
Cfa006087 Carpinus fangiana HOM05D006975 ORTHO05D008736 1.4e-12 77.0 70 55.7
Migut.C00848 Erythranthe guttata HOM05D006975 ORTHO05D008736 1.4e-12 77.0 80 53.8
Prupe.1G364300 Prunus persica HOM05D006975 ORTHO05D008736 1.4e-12 77.0 98 49.0
EL10Ac1g02185 Beta vulgaris HOM05D006975 ORTHO05D008736 1.8e-12 76.6 74 55.4
Nn1g05932 Nelumbo nucifera HOM05D006975 ORTHO05D008736 3.1e-12 75.9 68 58.8
Cpa.g.sc26.57 Carica papaya HOM05D006975 ORTHO05D008736 4.0e-12 75.5 65 56.9
CDE04G0963 Ceratophyllum demersum HOM05D006975 ORTHO05D008736 4.0e-12 75.5 96 44.8
Ciclev10001912m.g Citrus clementina HOM05D006975 ORTHO05D008736 4.0e-12 75.5 81 56.8
FAN15G2275 Fragaria x ananassa HOM05D006975 ORTHO05D008736 4.0e-12 75.5 79 50.6
Oeu027521.1 Olea europaea HOM05D006975 ORTHO05D008736 5.3e-12 75.1 55 63.6
PSO675G8288 Papaver somniferum HOM05D006975 ORTHO05D008736 5.3e-12 75.1 68 57.4
TAR536G0001 Trochodendron aralioides HOM05D006975 ORTHO05D008736 6.9e-12 74.7 76 55.3
CANSAT25G0709 Cannabis sativa HOM05D006975 ORTHO05D008736 9.0e-12 74.3 99 45.5
ClCG05G018220 Citrullus lanatus HOM05D006975 ORTHO05D008736 9.0e-12 74.3 90 47.8
ECA232G2413 Erigeron canadensis HOM05D006975 ORTHO05D008736 9.0e-12 74.3 108 45.4
Hund05184 Selenicereus undatus HOM05D006975 ORTHO05D008736 9.0e-12 74.3 66 57.6
PGR031G2234 Punica granatum HOM05D006975 ORTHO05D008736 1.2e-11 73.9 55 60.0
Atru.chr13.275 Acer truncatum HOM05D006975 ORTHO05D008736 1.5e-11 73.6 76 52.6
Gohir.D01G097400 Gossypium hirsutum HOM05D006975 ORTHO05D008736 1.5e-11 73.6 77 51.9
Gorai.002G123100 Gossypium raimondii HOM05D006975 ORTHO05D008736 1.5e-11 73.6 77 51.9
Hma1.2p1_0023F.1_g015540 Hydrangea macrophylla HOM05D006975 ORTHO05D008736 1.5e-11 73.6 72 52.8
MD08G1011800 Malus domestica HOM05D006975 ORTHO05D008736 1.5e-11 73.6 83 49.4
FAN20G0256 Fragaria x ananassa HOM05D006975 ORTHO05D008736 2.0e-11 73.2 86 47.7
Lj4A797T59 Lonicera japonica HOM05D006975 ORTHO05D008736 2.0e-11 73.2 95 47.4
Aqoxy6G02228 Aquilegia oxysepala HOM05D006975 ORTHO05D008736 2.6e-11 72.8 92 47.8
HanXRQChr05g0145201 Helianthus annuus HOM05D006975 ORTHO05D008736 5.8e-11 71.6 122 40.2
MSTRG.1185 Avicennia marina HOM05D006975 ORTHO05D008736 7.6e-11 71.2 73 50.7
RcHm_v2.0_Chr6g0303031 Rosa chinensis HOM05D006975 ORTHO05D008736 7.6e-11 71.2 86 46.5
THA.LOC104798667 Tarenaya hassleriana HOM05D006975 ORTHO05D008736 7.6e-11 71.2 96 41.7
AUR62041899 Chenopodium quinoa HOM05D006975 ORTHO05D008736 9.9e-11 70.9 42 78.6
Gohir.A01G110800 Gossypium hirsutum HOM05D006975 ORTHO05D008736 9.9e-11 70.9 77 49.4
Sed0014296 Sechium edule HOM05D006975 ORTHO05D008736 9.9e-11 70.9 129 40.3
AL7G29110 Arabidopsis lyrata HOM05D006975 ORTHO05D008736 1.7e-10 70.1 77 48.1
Duzib093G1023 Durio zibethinus HOM05D006975 ORTHO05D008736 1.7e-10 70.1 55 61.8
Eucgr.H00993 Eucalyptus grandis HOM05D006975 ORTHO05D008736 1.7e-10 70.1 104 42.3
Zm00001eb086730 Zea mays HOM05D006975 ORTHO05D008736 1.7e-10 70.1 56 60.7
Hma1.2p1_0023F.1_g015550 Hydrangea macrophylla HOM05D006975 ORTHO05D008736 2.2e-10 69.7 95 44.2
vmacro07578 Vaccinium macrocarpon HOM05D006975 ORTHO05D008736 2.9e-10 69.3 69 44.9
C01p19420 Brassica napus HOM05D006975 ORTHO05D008736 3.8e-10 68.9 63 52.4
FvH4_2g38330 Fragaria vesca HOM05D006975 ORTHO05D008736 3.8e-10 68.9 86 45.3
Sp7g22140 Schrenkiella parvula HOM05D006975 ORTHO05D008736 4.9e-10 68.6 96 44.8
Sed0023128 Sechium edule HOM05D006975 ORTHO05D008736 4.9e-10 68.6 66 50.0
SGA_v2.0_scaffold11G05927 Striga asiatica HOM05D006975 ORTHO05D008736 6.4e-10 68.2 91 44.0
Thhalv10025797m.g Eutrema salsugineum HOM05D006975 ORTHO05D008736 8.4e-10 67.8 66 50.0
Sopen04g035150 Solanum pennellii HOM05D006975 ORTHO05D008736 8.4e-10 67.8 105 39.0
A01p15500 Brassica napus HOM05D006975 ORTHO05D008736 1.1e-09 67.4 85 44.7
BraA01t01489Z Brassica rapa HOM05D006975 ORTHO05D008736 1.1e-09 67.4 85 44.7
Cc10_g01570 Coffea canephora HOM05D006975 ORTHO05D008736 1.1e-09 67.4 69 49.3
Solyc04g081540.3 Solanum lycopersicum HOM05D006975 ORTHO05D008736 1.4e-09 67.0 105 39.0
TAR381G1583 Trochodendron aralioides HOM05D006975 ORTHO05D008736 1.4e-09 67.0 51 62.7
BcaC09g50900 Brassica carinata HOM05D006975 ORTHO05D008736 1.9e-09 66.6 63 50.8
BcaNung01123 Brassica carinata HOM05D006975 ORTHO05D008736 1.9e-09 66.6 63 50.8
BolC1t01871H Brassica oleracea HOM05D006975 ORTHO05D008736 1.9e-09 66.6 63 50.8
Carub.0007s1692 Capsella rubella HOM05D006975 ORTHO05D008736 1.9e-09 66.6 53 56.6
PGSC0003DMG401009870 Solanum tuberosum HOM05D006975 ORTHO05D008736 1.9e-09 66.6 105 40.0
PSO541G1271 Papaver somniferum HOM05D006975 ORTHO05D008736 2.4e-09 66.2 70 50.0
HPP92_004984 Vanilla planifolia HOM05D006975 ORTHO05D008736 2.4e-09 66.2 71 52.1
AUR62035015 Chenopodium quinoa HOM05D006975 ORTHO05D008736 3.2e-09 65.9 43 67.4
Lsat_1_v5_gn_0_34641 Lactuca sativa HOM05D006975 ORTHO05D008736 3.2e-09 65.9 51 60.8
FAN27G0483 Fragaria x ananassa HOM05D006975 ORTHO05D008736 4.2e-09 65.5 73 46.6
DCAR_021031 Daucus carota HOM05D006975 ORTHO05D008736 5.5e-09 65.1 77 49.4
Os04g0250700 Oryza sativa ssp. japonica HOM05D006975 ORTHO05D008736 7.1e-09 64.7 69 44.9
AT4G24175 Arabidopsis thaliana HOM05D006975 ORTHO05D008736 1.2e-08 63.9 53 52.8
CsaV3_3G045930 Cucumis sativus L. HOM05D006975 ORTHO05D008736 1.2e-08 63.9 90 43.3
Eucgr.H00983 Eucalyptus grandis HOM05D006975 ORTHO05D008736 2.1e-08 63.2 57 56.1
Nitab4.5_0008000g0010 Nicotiana tabacum HOM05D006975 ORTHO05D008736 2.1e-08 63.2 67 49.3
ATR0564G524 Amborella trichopoda HOM05D006975 ORTHO05D008736 2.7e-08 62.8 52 61.5
CAN.G311.39 Capsicum annuum HOM05D006975 ORTHO05D008736 3.5e-08 62.4 112 38.4
Peaxi162Scf00553g00101 Petunia axillaris HOM05D006975 ORTHO05D008736 1.3e-07 60.5 66 47.0
Aa31sc424G20 Aethionema arabicum HOM05D006975 ORTHO05D008736 2.3e-07 59.7 83 42.2
CARHR231580 Cardamine hirsuta HOM05D006975 ORTHO05D008736 2.3e-07 59.7 74 41.9
unitig_748.g7725 Utricularia gibba HOM05D006975 ORTHO05D008736 1.9e-06 56.6 67 52.2
MELO3C003746.2 Cucumis melo HOM05D006975 ORTHO05D008736 2.5e-06 56.2 102 40.2
QL02p011816 Quercus lobata HOM05D006975 ORTHO05D008736 4.3e-06 55.5 60 53.3
Thecc.08G046000 Theobroma cacao HOM05D006975 ORTHO05D008736 7.4e-06 54.7 54 53.7


User provided reference genes

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