Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 1.0e-51 206.5 104 100.0
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 4.6e-44 181.0 92 97.8
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 2.7e-20 102.1 106 57.5
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 2.7e-20 102.1 106 56.6
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 5.1e-19 97.8 107 53.3
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 4.3e-18 94.7 93 62.4
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 7.4e-18 94.0 93 62.4
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 7.4e-18 94.0 107 53.3
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 9.7e-18 93.6 110 57.3
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 2.8e-17 92.0 109 54.1
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 8.2e-17 90.5 109 44.0
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 3.1e-16 88.6 93 53.8
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 2.6e-15 85.5 102 52.0
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 2.6e-15 85.5 111 43.2
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 3.4e-15 85.1 106 53.8
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 4.5e-15 84.7 106 44.3
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 1.7e-14 82.8 68 60.3
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 1.7e-14 82.8 105 51.4
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 1.7e-14 82.8 106 46.2
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 1.7e-14 82.8 104 51.0
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 3.8e-14 81.6 107 50.5
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 3.8e-14 81.6 104 51.0
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 6.5e-14 80.9 68 60.3
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 8.5e-14 80.5 101 50.5
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 8.5e-14 80.5 104 46.2
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 8.5e-14 80.5 104 46.2
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 1.4e-13 79.7 114 42.1
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 1.4e-13 79.7 63 68.3
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 1.9e-13 79.3 104 48.1
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.5e-13 79.0 89 50.6
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 3.2e-13 78.6 63 66.7
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 4.2e-13 78.2 105 48.6
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 4.2e-13 78.2 73 54.8
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 4.2e-13 78.2 110 46.4
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 4.2e-13 78.2 110 46.4
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 4.2e-13 78.2 66 59.1
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 7.2e-13 77.4 73 63.0
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 7.2e-13 77.4 104 45.2
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 7.2e-13 77.4 76 53.9
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 9.4e-13 77.0 62 64.5
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 1.6e-12 76.3 103 47.6
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.7e-12 75.5 107 43.9
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 3.6e-12 75.1 63 61.9
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 3.6e-12 75.1 106 46.2
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 6.1e-12 74.3 69 58.0
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 6.1e-12 74.3 73 60.3
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 6.1e-12 74.3 70 54.3
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 6.1e-12 74.3 70 54.3
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 6.1e-12 74.3 66 62.1
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 7.9e-12 73.9 66 63.6
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 7.9e-12 73.9 89 49.4
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 7.9e-12 73.9 63 65.1
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 7.9e-12 73.9 73 60.3
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.0e-11 73.6 89 49.4
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.0e-11 73.6 89 48.3
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 1.0e-11 73.6 66 56.1
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 1.4e-11 73.2 74 56.8
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.4e-11 73.2 97 46.4
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 2.3e-11 72.4 78 53.8
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 3.0e-11 72.0 69 60.9
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.0e-11 72.0 99 45.5
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 3.9e-11 71.6 67 59.7
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 3.9e-11 71.6 66 57.6
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 5.1e-11 71.2 102 48.0
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 5.1e-11 71.2 70 52.9
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 6.7e-11 70.9 95 47.4
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 6.7e-11 70.9 73 50.7
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 6.7e-11 70.9 106 42.5
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 8.8e-11 70.5 66 57.6
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 8.8e-11 70.5 66 57.6
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 1.1e-10 70.1 72 56.9
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 1.5e-10 69.7 112 39.3
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 1.5e-10 69.7 112 39.3
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 1.5e-10 69.7 103 42.7
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 1.5e-10 69.7 104 46.2
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.5e-10 69.7 67 56.7
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 1.5e-10 69.7 103 42.7
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 1.5e-10 69.7 91 47.3
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 2.0e-10 69.3 102 42.2
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 2.0e-10 69.3 112 38.4
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 2.0e-10 69.3 112 38.4
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 2.0e-10 69.3 75 53.3
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 2.5e-10 68.9 73 54.8
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 2.5e-10 68.9 102 43.1
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 2.5e-10 68.9 68 54.4
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 2.5e-10 68.9 101 42.6
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 3.3e-10 68.6 89 47.2
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 3.3e-10 68.6 70 54.3
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 3.3e-10 68.6 102 49.0
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.3e-10 68.6 66 56.1
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 3.3e-10 68.6 68 54.4
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 3.3e-10 68.6 68 54.4
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 4.3e-10 68.2 109 45.0
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 4.3e-10 68.2 85 49.4
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 5.7e-10 67.8 101 43.6
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 7.4e-10 67.4 102 43.1
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 9.7e-10 67.0 84 46.4
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.3e-09 66.6 65 53.8
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.7e-09 66.2 65 55.4
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 2.2e-09 65.9 106 42.5
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 2.8e-09 65.5 96 47.9
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 2.8e-09 65.5 64 56.2
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 3.7e-09 65.1 65 56.9
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 3.7e-09 65.1 95 45.3
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 3.7e-09 65.1 64 54.7
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 4.8e-09 64.7 60 58.3
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 4.8e-09 64.7 65 53.8
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 6.3e-09 64.3 73 52.1
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 6.3e-09 64.3 106 42.5
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 6.3e-09 64.3 99 41.4
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 8.2e-09 63.9 106 41.5
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 8.2e-09 63.9 103 40.8
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 8.2e-09 63.9 102 38.2
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 8.2e-09 63.9 103 40.8
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 8.2e-09 63.9 103 40.8
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 8.2e-09 63.9 102 40.2
Carub.0007s1945 Capsella rubella HOM05D009543 ORTHO05D004666 8.2e-09 63.9 109 36.7
Thhalv10026583m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 1.1e-08 63.5 110 39.1
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 1.4e-08 63.2 102 43.1
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 1.4e-08 63.2 67 52.2
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 1.8e-08 62.8 74 47.3
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 1.8e-08 62.8 96 46.9
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 1.8e-08 62.8 63 55.6
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 1.8e-08 62.8 67 49.3
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 2.4e-08 62.4 104 42.3
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 2.4e-08 62.4 67 53.7
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 2.4e-08 62.4 104 42.3
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.4e-08 62.4 58 58.6
Aa31LG6G3890 Aethionema arabicum HOM05D005226 ORTHO05D004666 3.1e-08 62.0 71 53.5
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 3.1e-08 62.0 103 41.7
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 3.1e-08 62.0 63 54.0
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 4.1e-08 61.6 65 50.8
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 6.9e-08 60.8 75 48.0
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 6.9e-08 60.8 75 48.0
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 6.9e-08 60.8 67 53.7
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 6.9e-08 60.8 67 50.7
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 6.9e-08 60.8 74 47.3
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 6.9e-08 60.8 62 51.6
BcaC04g21321 Brassica carinata HOM05D009543 ORTHO05D004666 9.1e-08 60.5 103 38.8
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 9.1e-08 60.5 104 39.4
C09p33170 Brassica napus HOM05D009543 ORTHO05D004666 9.1e-08 60.5 103 38.8
BolC9t56151H Brassica oleracea HOM05D009543 ORTHO05D004666 9.1e-08 60.5 103 38.8
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 9.1e-08 60.5 104 39.4
Sp7g20070 Schrenkiella parvula HOM05D009543 ORTHO05D004666 9.1e-08 60.5 102 39.2
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 1.2e-07 60.1 67 49.3
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 1.5e-07 59.7 102 42.2
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 1.5e-07 59.7 75 48.0
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 1.5e-07 59.7 88 42.0
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 1.5e-07 59.7 88 42.0
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 1.5e-07 59.7 70 47.1
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 2.0e-07 59.3 78 44.9
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 2.0e-07 59.3 105 43.8
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 2.0e-07 59.3 67 53.7
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 2.0e-07 59.3 67 53.7
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 3.4e-07 58.5 103 38.8
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 3.4e-07 58.5 66 48.5
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 4.5e-07 58.2 86 39.5
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 5.9e-07 57.8 69 46.4
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 7.7e-07 57.4 86 41.9
AT4G21902 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 1.7e-06 56.2 66 47.0
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 2.2e-06 55.8 67 52.2
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 2.2e-06 55.8 109 37.6
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.9e-06 55.5 83 42.2
arahy.Tifrunner.gnm1.ann1.6X23CA Arachis hypogaea HOM05D005226 ORTHO05D004666 3.8e-06 55.1 54 63.0
Cfa017341 Carpinus fangiana HOM05D005226 ORTHO05D004666 5.0e-06 54.7 62 54.8


User provided reference genes

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