Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 2.3e-249 865.1 448 100.0
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 3.8e-228 794.7 448 93.5
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 2.1e-218 762.3 461 85.9
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 7.2e-211 737.3 461 84.6
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 1.6e-210 736.1 458 84.7
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 1.1e-206 723.4 461 83.5
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 3.6e-202 708.4 461 80.3
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 4.4e-200 701.4 460 81.1
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 5.7e-200 701.0 465 80.6
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 3.5e-197 691.8 464 79.7
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 1.2e-194 683.3 459 79.7
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 3.6e-194 681.8 472 76.9
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 1.3e-188 663.3 463 75.6
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 2.2e-188 662.5 356 94.1
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 9.4e-187 657.1 468 73.7
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 8.8e-185 650.6 397 84.6
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 1.3e-183 646.7 475 73.1
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 6.3e-183 644.4 475 73.1
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 1.1e-182 643.7 448 74.8
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 2.4e-182 642.5 467 73.2
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 2.4e-182 642.5 467 73.2
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 1.6e-181 639.8 466 73.4
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 3.5e-181 638.6 471 72.0
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 4.5e-181 638.3 473 71.9
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 7.7e-181 637.5 468 72.6
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 1.7e-180 636.3 464 73.1
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 1.7e-180 636.3 471 73.2
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 2.3e-180 636.0 464 73.3
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 2.5e-179 632.5 478 70.7
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 3.3e-179 632.1 462 74.2
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 3.3e-179 632.1 472 69.7
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 4.2e-179 631.7 462 74.0
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 4.2e-179 631.7 473 72.1
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 5.5e-179 631.3 478 70.3
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 5.5e-179 631.3 462 74.0
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 7.2e-179 630.9 479 72.0
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 2.1e-178 629.4 476 71.2
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.7e-178 628.2 465 70.3
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 1.0e-177 627.1 462 70.8
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 1.4e-177 626.7 489 68.3
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 4.0e-177 625.2 469 71.9
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 6.8e-177 624.4 459 71.5
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 8.9e-177 624.0 459 71.9
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 1.2e-176 623.6 469 69.1
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 2.0e-176 622.9 477 71.7
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.6e-176 622.5 475 69.3
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 3.4e-176 622.1 473 70.8
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 2.8e-175 619.0 465 70.3
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 2.8e-175 619.0 485 68.2
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 3.7e-175 618.6 469 68.4
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 4.9e-175 618.2 490 69.0
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 6.3e-175 617.8 459 71.0
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 3.1e-174 615.5 499 67.1
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 2.7e-173 612.5 459 70.8
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 2.7e-173 612.5 470 70.6
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 4.5e-173 611.7 469 68.9
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 5.9e-173 611.3 467 70.7
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 5.9e-173 611.3 480 69.8
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 1.0e-172 610.5 463 70.0
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 1.1e-171 607.1 469 69.1
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 1.9e-171 606.3 504 66.7
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 2.5e-171 605.9 460 69.6
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 3.3e-171 605.5 459 69.9
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 3.3e-171 605.5 469 69.3
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 4.3e-171 605.1 513 66.1
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 5.6e-171 604.7 459 70.6
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 7.3e-171 604.4 458 69.9
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 9.5e-171 604.0 466 68.7
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 2.1e-170 602.8 464 69.2
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 2.1e-170 602.8 464 69.2
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.1e-170 602.8 459 69.5
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 2.1e-170 602.8 523 65.2
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 6.1e-170 601.3 455 70.3
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 1.0e-169 600.5 449 71.7
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 1.8e-169 599.7 466 70.0
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 4.0e-169 598.6 444 71.4
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 5.2e-169 598.2 471 68.8
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 8.9e-169 597.4 473 68.3
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 1.2e-168 597.0 467 67.9
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 1.2e-168 597.0 448 68.8
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.4e-168 595.1 448 68.8
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 5.8e-168 594.7 465 68.4
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 9.8e-168 594.0 456 69.5
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 6.4e-167 591.3 459 68.8
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 1.9e-166 589.7 467 68.7
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 2.4e-166 589.3 527 62.6
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 5.4e-166 588.2 508 63.6
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 1.2e-165 587.0 345 84.6
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 2.0e-165 586.3 461 68.1
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 3.5e-165 585.5 459 69.7
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 2.3e-164 582.8 467 67.0
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 5.0e-164 581.6 396 75.5
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 6.6e-164 581.3 470 67.7
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 1.1e-163 580.5 469 67.8
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 2.5e-163 579.3 468 68.6
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 4.3e-163 578.6 473 67.2
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.2e-162 577.0 433 68.8
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 4.0e-161 572.0 478 65.3
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 7.5e-160 567.8 484 64.5
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 2.9e-159 565.8 515 61.0
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 3.7e-159 565.5 454 68.1
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 8.3e-159 564.3 459 66.9
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 2.4e-158 562.8 363 76.9
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 5.4e-158 561.6 466 66.1
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 3.0e-156 555.8 431 69.4
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 1.9e-155 553.1 465 65.8
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 4.3e-155 552.0 461 65.7
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 9.5e-155 550.8 479 64.9
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 2.1e-154 549.7 457 65.9
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 6.2e-154 548.1 457 66.1
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 5.2e-153 545.0 332 80.4
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 8.9e-153 544.3 494 60.5
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 9.9e-152 540.8 452 64.8
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 4.9e-151 538.5 457 65.0
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 3.5e-149 532.3 480 61.9
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 3.0e-148 529.3 406 68.5
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 3.0e-148 529.3 427 67.2
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 1.9e-147 526.6 396 71.7
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 3.3e-147 525.8 459 63.4
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 2.1e-146 523.1 483 60.0
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.5e-144 516.9 449 63.3
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 2.6e-144 516.2 285 89.1
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 7.6e-144 514.6 503 60.2
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 4.2e-142 508.8 454 59.5
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 1.6e-141 506.9 279 87.5
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 1.2e-138 497.3 461 60.5
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 1.6e-138 496.9 500 56.4
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 2.1e-138 496.5 336 72.6
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 7.1e-134 481.5 458 57.6
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 9.6e-131 471.1 329 69.3
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.5e-128 463.8 408 62.3
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 1.7e-127 460.3 334 70.4
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.9e-127 458.8 492 53.3
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 5.4e-126 455.3 419 61.1
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 2.1e-125 453.4 560 51.1
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.1e-121 441.0 426 59.6
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 1.4e-118 430.6 414 55.1
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 5.5e-118 428.7 356 63.5
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 7.4e-115 418.3 419 58.0
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.1e-113 414.5 467 54.0
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.3e-99 366.3 287 66.2
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 2.2e-98 363.6 347 55.9
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 1.5e-96 357.5 387 53.0
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 7.2e-94 348.6 412 48.1
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 3.0e-76 290.0 457 44.9
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 3.1e-73 280.0 267 54.3
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 5.4e-65 252.7 466 41.2
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 1.6e-53 214.5 389 36.8
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 9.8e-43 178.7 243 49.0
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.4e-41 174.9 166 59.0
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 1.1e-38 165.2 120 70.8
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 9.6e-30 135.6 81 79.0
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 2.0e-27 127.9 155 48.4
Medtr8g090145 Medicago truncatula HOM05D004480 ORTHO05D005546 6.6e-23 112.8 179 48.0
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 2.1e-21 107.8 176 44.9
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.4e-20 105.1 196 42.9
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 3.4e-19 100.5 193 45.1
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 4.4e-19 100.1 107 51.4
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 1.6e-16 91.7 154 40.9
arahy.Tifrunner.gnm1.ann1.KQP37W Arachis hypogaea HOM05D004480 ORTHO05D083446 3.0e-07 60.8 61 60.7
Ca_25752_v3 Cicer arietinum L. HOM05D009226 ORTHO05D010767 3.0e-07 60.8 81 53.1
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 5.1e-07 60.1 205 26.3
Medtr4g087670 Medicago truncatula HOM05D004480 ORTHO05D263555 6.7e-07 59.7 44 59.1


User provided reference genes

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