Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 8.2e-249 863.2 426 100.0
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 1.1e-205 719.9 420 82.4
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 6.8e-203 710.7 424 81.4
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 6.4e-185 651.0 416 73.3
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 8.4e-185 650.6 418 73.0
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 5.4e-184 647.9 413 73.1
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 5.4e-184 647.9 414 72.5
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 9.3e-184 647.1 416 72.8
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 2.7e-183 645.6 412 72.8
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 1.0e-182 643.7 413 72.4
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.3e-182 643.3 413 72.4
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 3.0e-182 642.1 413 72.4
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 3.9e-182 641.7 412 73.8
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 3.9e-182 641.7 414 72.5
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 5.1e-182 641.3 414 72.7
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 8.7e-182 640.6 412 73.5
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 3.3e-181 638.6 415 71.8
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 4.3e-181 638.3 415 71.8
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 5.6e-181 637.9 413 72.9
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 5.6e-181 637.9 414 71.7
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 7.4e-181 637.5 414 71.0
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 9.6e-181 637.1 412 71.8
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 1.3e-180 636.7 412 72.6
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 1.3e-180 636.7 413 72.9
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 1.3e-180 636.7 411 72.3
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.3e-180 636.7 413 72.2
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 1.6e-180 636.3 412 72.3
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 3.7e-180 635.2 412 72.1
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 3.7e-180 635.2 412 71.8
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 3.7e-180 635.2 427 71.2
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 3.7e-180 635.2 412 72.1
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 4.8e-180 634.8 415 71.8
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 4.8e-180 634.8 413 72.9
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 4.8e-180 634.8 412 71.6
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 6.2e-180 634.4 412 71.6
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 6.2e-180 634.4 414 71.3
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 8.1e-180 634.0 413 72.6
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 1.1e-179 633.6 413 72.4
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 1.4e-179 633.3 416 71.6
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.4e-179 633.3 416 70.2
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 1.4e-179 633.3 417 71.0
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.8e-179 632.9 413 70.7
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 2.4e-179 632.5 414 71.3
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 5.3e-179 631.3 416 70.9
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 6.9e-179 630.9 411 72.5
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 6.9e-179 630.9 412 72.3
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 9.0e-179 630.6 412 71.1
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 9.0e-179 630.6 414 71.7
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 1.2e-178 630.2 438 68.3
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.2e-178 630.2 408 71.1
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 1.5e-178 629.8 413 71.4
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 2.0e-178 629.4 414 71.0
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 2.6e-178 629.0 414 71.5
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 3.4e-178 628.6 412 70.9
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 3.4e-178 628.6 412 71.1
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 3.4e-178 628.6 413 70.9
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 3.4e-178 628.6 416 70.0
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 4.5e-178 628.2 412 71.1
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 4.5e-178 628.2 412 71.6
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 4.5e-178 628.2 416 70.0
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 4.5e-178 628.2 430 69.5
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 5.8e-178 627.9 412 70.9
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 5.8e-178 627.9 411 72.5
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 5.8e-178 627.9 412 72.6
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 5.8e-178 627.9 416 69.7
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 7.6e-178 627.5 416 70.0
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 9.9e-178 627.1 412 70.9
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 9.9e-178 627.1 412 70.9
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 1.3e-177 626.7 411 70.3
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 1.7e-177 626.3 413 71.4
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 2.2e-177 625.9 412 70.9
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 2.2e-177 625.9 417 70.7
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 2.9e-177 625.5 412 70.1
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 3.8e-177 625.2 416 70.0
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 4.9e-177 624.8 412 70.6
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 6.4e-177 624.4 413 71.2
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 8.4e-177 624.0 412 70.4
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 8.4e-177 624.0 415 70.4
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 8.4e-177 624.0 412 70.9
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 1.9e-176 622.9 428 69.9
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 2.4e-176 622.5 412 70.6
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 3.2e-176 622.1 414 70.0
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 4.2e-176 621.7 412 71.4
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 5.5e-176 621.3 420 69.5
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 5.5e-176 621.3 414 69.8
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 7.1e-176 620.9 415 71.1
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 7.1e-176 620.9 416 69.5
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 9.3e-176 620.5 414 69.8
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 2.1e-175 619.4 414 70.5
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 2.7e-175 619.0 411 69.6
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 3.5e-175 618.6 412 71.4
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 6.0e-175 617.8 412 70.1
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 6.0e-175 617.8 412 71.1
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 6.0e-175 617.8 412 69.7
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 1.3e-174 616.7 412 70.4
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 1.8e-174 616.3 416 70.2
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 3.0e-174 615.5 412 69.9
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 3.0e-174 615.5 412 69.7
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 3.9e-174 615.1 413 69.7
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 5.1e-174 614.8 412 70.4
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 3.3e-173 612.1 411 70.3
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 5.6e-173 611.3 433 68.1
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 7.4e-173 610.9 416 69.5
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 9.6e-173 610.5 428 68.5
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 3.7e-172 608.6 428 68.7
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 4.8e-172 608.2 457 65.0
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.4e-171 605.9 428 68.0
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 4.0e-171 605.1 412 68.4
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 1.2e-170 603.6 405 71.9
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 3.4e-170 602.1 448 65.6
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 5.8e-170 601.3 410 68.8
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 7.6e-170 600.9 416 66.8
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 3.8e-169 598.6 414 67.4
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 4.9e-169 598.2 413 68.5
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 4.9e-169 598.2 414 68.1
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 4.9e-169 598.2 421 67.5
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 4.9e-169 598.2 410 69.5
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 4.2e-168 595.1 416 69.7
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 4.2e-168 595.1 416 68.8
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 2.1e-167 592.8 415 68.2
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 1.8e-166 589.7 425 66.4
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 2.3e-166 589.3 412 68.9
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 8.7e-166 587.4 502 59.4
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 5.7e-165 584.7 416 66.6
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 4.8e-164 581.6 413 68.0
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 2.9e-161 572.4 356 74.2
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 1.4e-160 570.1 418 65.6
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 3.6e-159 565.5 417 62.4
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 1.0e-158 563.9 361 72.9
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 1.4e-155 553.5 367 68.9
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 2.4e-155 552.7 413 64.4
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 1.1e-152 543.9 412 65.0
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 7.2e-152 541.2 342 73.7
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 4.7e-151 538.5 360 69.2
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.0e-150 537.3 340 72.6
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 9.7e-149 530.8 413 60.8
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 4.5e-146 521.9 412 60.2
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 1.1e-144 517.3 418 59.3
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 1.4e-142 510.4 418 58.9
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 4.2e-136 488.8 430 57.9
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 8.2e-132 474.6 426 55.4
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 5.9e-130 468.4 414 57.0
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 6.3e-124 448.4 298 70.1
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 2.1e-119 433.3 340 61.5
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 7.5e-117 424.9 316 64.9
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 1.2e-106 391.0 302 63.6
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 6.6e-105 385.2 416 47.4
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 1.1e-104 384.4 425 48.2
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 5.6e-104 382.1 223 77.6
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 2.8e-103 379.8 407 48.6
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 1.4e-102 377.5 289 63.3
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 3.5e-98 362.8 503 38.6
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 2.3e-94 350.1 235 71.5
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 1.6e-87 327.4 245 62.0
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.4e-83 313.5 198 73.7
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.0e-81 308.1 198 72.2
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 1.4e-70 271.2 226 62.4
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 5.4e-67 259.2 220 60.0
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 4.5e-61 239.6 163 68.1
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 4.2e-59 233.0 258 49.2
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 2.1e-58 230.7 173 63.0
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 4.3e-56 223.0 151 71.5
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 8.2e-55 218.8 178 60.7
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 5.3e-54 216.1 156 65.4
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 2.2e-52 210.7 229 48.5
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.5e-48 198.0 124 74.2
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 5.9e-45 186.0 183 50.8
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 3.8e-44 183.3 121 68.6
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.2e-42 178.3 333 33.9
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 6.7e-41 172.6 125 63.2
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 8.8e-41 172.2 121 67.8
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.7e-39 166.8 339 33.6
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 4.5e-37 159.8 119 61.3
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 4.2e-35 153.3 101 68.3
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 1.0e-25 122.1 66 75.8
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 2.2e-23 114.4 85 64.7
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 3.7e-23 113.6 122 49.2
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 1.8e-22 111.3 71 71.8
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 1.4e-14 85.1 87 47.1
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 3.5e-13 80.5 87 44.8
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 5.0e-12 76.6 60 61.7
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 5.7e-08 63.2 35 74.3
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.7e-07 61.6 61 55.7
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 6.3e-07 59.7 301 21.6


User provided reference genes

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