Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb334700 Zea mays HOM05D004674 ORTHO05D007261 8.8e-51 203.4 106 100.0
Zm00001eb098830 Zea mays HOM05D004674 ORTHO05D007261 8.3e-33 143.7 75 98.7
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 1.0e-30 136.7 74 94.6
Zm00001eb124970 Zea mays HOM05D004674 ORTHO05D007261 2.1e-28 129.0 74 89.2
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 2.6e-26 122.1 74 83.8
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 6.6e-22 107.5 71 76.1
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 8.6e-22 107.1 74 73.0
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 1.5e-21 106.3 74 71.6
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 4.3e-21 104.8 72 75.0
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 4.3e-21 104.8 72 75.0
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 9.5e-21 103.6 71 71.8
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 9.5e-21 103.6 71 71.8
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 1.2e-20 103.2 73 72.6
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 1.2e-20 103.2 73 68.5
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 1.6e-20 102.8 71 71.8
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 1.6e-20 102.8 71 71.8
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 2.1e-20 102.4 71 71.8
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 2.1e-20 102.4 71 70.4
DCAR_017308 Daucus carota HOM05D004674 ORTHO05D007261 2.1e-20 102.4 72 72.2
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 2.1e-20 102.4 71 71.8
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 2.8e-20 102.1 71 73.2
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 3.6e-20 101.7 73 68.5
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 4.7e-20 101.3 71 70.4
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 4.7e-20 101.3 71 70.4
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 4.7e-20 101.3 71 71.8
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 4.7e-20 101.3 71 73.2
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 6.2e-20 100.9 71 70.4
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 6.2e-20 100.9 71 71.8
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 8.1e-20 100.5 71 70.4
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 8.1e-20 100.5 72 69.4
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 8.1e-20 100.5 72 69.4
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 8.1e-20 100.5 71 70.4
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 8.1e-20 100.5 72 69.4
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 8.1e-20 100.5 72 70.8
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 8.1e-20 100.5 70 71.4
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 8.1e-20 100.5 71 71.8
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 8.1e-20 100.5 71 69.0
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 1.1e-19 100.1 71 70.4
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 1.1e-19 100.1 71 69.0
QL06p035429 Quercus lobata HOM05D004674 ORTHO05D007261 1.1e-19 100.1 71 69.0
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 1.4e-19 99.8 71 70.4
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 1.4e-19 99.8 72 68.1
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 1.4e-19 99.8 70 71.4
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 1.4e-19 99.8 71 69.0
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 1.4e-19 99.8 71 70.4
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 1.8e-19 99.4 71 69.0
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 1.8e-19 99.4 71 69.0
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 1.8e-19 99.4 71 70.4
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.8e-19 99.4 71 70.4
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.8e-19 99.4 71 70.4
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.8e-19 99.4 71 70.4
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 1.8e-19 99.4 72 69.4
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 2.3e-19 99.0 72 69.4
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 2.3e-19 99.0 72 69.4
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 2.3e-19 99.0 71 69.0
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 2.3e-19 99.0 71 69.0
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 2.3e-19 99.0 71 69.0
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 2.3e-19 99.0 71 69.0
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 2.3e-19 99.0 71 70.4
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 2.3e-19 99.0 72 70.8
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 2.3e-19 99.0 71 70.4
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 3.1e-19 98.6 71 69.0
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 3.1e-19 98.6 71 69.0
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 3.1e-19 98.6 71 69.0
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 3.1e-19 98.6 71 71.8
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 3.1e-19 98.6 71 69.0
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 3.1e-19 98.6 71 70.4
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 3.1e-19 98.6 70 71.4
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 3.1e-19 98.6 71 67.6
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 3.1e-19 98.6 70 71.4
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 3.1e-19 98.6 70 71.4
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 4.0e-19 98.2 71 69.0
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 4.0e-19 98.2 71 69.0
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 4.0e-19 98.2 71 69.0
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 4.0e-19 98.2 71 69.0
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 4.0e-19 98.2 70 71.4
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 4.0e-19 98.2 72 68.1
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 5.2e-19 97.8 72 69.4
vmacro19462 Vaccinium macrocarpon HOM05D004674 ORTHO05D007261 5.2e-19 97.8 71 69.0
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 5.2e-19 97.8 72 68.1
Pp3c20_8030 Physcomitrium patens HOM05D004674 ORTHO05D007261 6.8e-19 97.4 72 70.8
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 6.8e-19 97.4 72 69.4
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 8.9e-19 97.1 72 68.1
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 8.9e-19 97.1 71 67.6
MSTRG.2485 Avicennia marina HOM05D004674 ORTHO05D007261 1.2e-18 96.7 71 69.0
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 1.2e-18 96.7 70 70.0
MELO3C007854.2 Cucumis melo HOM05D004674 ORTHO05D007261 1.2e-18 96.7 71 67.6
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 1.2e-18 96.7 70 70.0
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 1.5e-18 96.3 71 67.6
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 1.5e-18 96.3 71 67.6
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 1.5e-18 96.3 71 67.6
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.5e-18 96.3 71 70.4
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 2.0e-18 95.9 72 68.1
SGA_v2.0_scaffold12G06320 Striga asiatica HOM05D004674 ORTHO05D007261 2.0e-18 95.9 72 66.7
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 2.6e-18 95.5 71 66.2
QL06p035418 Quercus lobata HOM05D004674 ORTHO05D007261 2.6e-18 95.5 71 66.2
SMO367G0601 Selaginella moellendorffii HOM05D004674 ORTHO05D007261 2.6e-18 95.5 71 70.4
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 2.6e-18 95.5 71 70.4
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 4.4e-18 94.7 71 67.6
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 4.4e-18 94.7 71 67.6
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 2.2e-17 92.4 71 63.4
Glyma.16G133867 Glycine max HOM05D004674 ORTHO05D007261 2.9e-17 92.0 72 65.3
MD02G1142700 Malus domestica HOM05D004674 ORTHO05D007261 1.4e-16 89.7 73 65.8
TAR376G0765 Trochodendron aralioides HOM05D004674 ORTHO05D007261 4.1e-16 88.2 71 64.8
TAR376G0549 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.1e-15 85.9 67 67.2
AagrBONN_evm.TU.Sc2ySwM_344.2833 Anthoceros agrestis HOM05D004674 ORTHO05D007261 2.7e-15 85.5 71 63.4
Psat0s3062g0040 Pisum sativum HOM05D004674 ORTHO05D007261 6.8e-11 70.9 52 65.4
Psat4g095680 Pisum sativum HOM05D004674 ORTHO05D007261 1.2e-07 60.1 43 72.1


User provided reference genes

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