Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb230460 Zea mays HOM05D000104 ORTHO05D009920 5.1e-175 617.8 359 100.0
Zm00001eb230400 Zea mays HOM05D000104 ORTHO05D009920 2.5e-113 412.9 436 64.7
Os02g0121900 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D009920 5.4e-68 262.3 437 48.7
Zm00001eb230320 Zea mays HOM05D000104 ORTHO05D009920 3.2e-60 236.5 169 95.9
Zm00001eb230370 Zea mays HOM05D000104 ORTHO05D009920 1.8e-55 220.7 220 75.0
Gohir.D08G158800 Gossypium hirsutum HOM05D000104 ORTHO05D008354 1.2e-35 154.8 288 44.8
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 2.9e-29 133.7 269 36.1
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 3.2e-28 130.2 269 35.7
Sed0002743 Sechium edule HOM05D000104 ORTHO05D009920 1.2e-27 128.3 179 37.4
DCAR_009464 Daucus carota HOM05D000104 ORTHO05D009920 4.3e-25 119.8 125 45.6
COL.COLO4_12449 Corchorus olitorius HOM05D000447 ORTHO05D000315 9.7e-25 118.6 121 47.1
RcHm_v2.0_Chr1g0346171 Rosa chinensis HOM05D000104 ORTHO05D009920 9.7e-25 118.6 167 38.9
Oeu024268.1 Olea europaea HOM05D000104 ORTHO05D009920 2.2e-24 117.5 133 45.9
FAN06G4654 Fragaria x ananassa HOM05D000104 ORTHO05D009920 1.1e-23 115.2 128 44.5
FAN06G4216 Fragaria x ananassa HOM05D000104 ORTHO05D009920 1.8e-23 114.4 128 44.5
FvH4_7g09470 Fragaria vesca HOM05D000104 ORTHO05D009920 5.3e-23 112.8 128 43.8
Migut.F00552 Erythranthe guttata HOM05D000104 ORTHO05D009920 9.1e-23 112.1 127 48.0
FAN10G2081 Fragaria x ananassa HOM05D000104 ORTHO05D009920 4.5e-22 109.8 128 41.4
Lalb_Chr03g0040111 Lupinus albus HOM05D000104 ORTHO05D009920 1.7e-21 107.8 127 43.3
Nn5g26955 Nelumbo nucifera HOM05D000104 ORTHO05D009920 2.3e-18 97.4 208 44.7
Cpa.g.sc101.54 Carica papaya HOM05D000104 ORTHO05D009920 5.1e-18 96.3 156 37.2
Medtr7g044790 Medicago truncatula HOM05D000104 ORTHO05D009920 5.7e-17 92.8 128 46.1
SalBow5G5686 Salvia bowleyana HOM05D000104 ORTHO05D009920 5.7e-17 92.8 211 28.4
arahy.Tifrunner.gnm1.ann1.UTK222 Arachis hypogaea HOM05D000104 ORTHO05D009920 3.7e-16 90.1 166 38.0
Glyma.12G191600 Glycine max HOM05D000104 ORTHO05D009920 3.7e-16 90.1 128 44.5
Prupe.2G122500 Prunus persica HOM05D000104 ORTHO05D009920 4.8e-16 89.7 132 38.6
PGR004G2133 Punica granatum HOM05D000104 ORTHO05D009920 6.3e-16 89.4 125 47.2
VMungo1309G1576 Vigna mungo HOM05D000104 ORTHO05D009920 6.3e-16 89.4 128 45.3
Hma1.2p1_1014F.1_g247820 Hydrangea macrophylla HOM05D000104 ORTHO05D009920 8.2e-16 89.0 132 37.1
Phvul.009G206300 Phaseolus vulgaris HOM05D000104 ORTHO05D009920 1.8e-15 87.8 128 38.3
Aqoxy5G03976 Aquilegia oxysepala HOM05D000104 ORTHO05D009920 2.4e-15 87.4 145 45.5
FAN10G1160 Fragaria x ananassa HOM05D000104 ORTHO05D009920 2.4e-15 87.4 130 36.9
TPR.G39133 Trifolium pratense HOM05D000104 ORTHO05D009920 2.4e-15 87.4 128 45.3
THA.LOC104817005 Tarenaya hassleriana HOM05D000104 ORTHO05D009920 7.0e-15 85.9 205 40.5
ATR1089G041 Amborella trichopoda HOM05D000104 ORTHO05D009920 1.5e-14 84.7 127 36.2
TAR629G2305 Trochodendron aralioides HOM05D000104 ORTHO05D009920 5.9e-14 82.8 91 45.1
Peaxi162Scf00073g00196 Petunia axillaris HOM05D000104 ORTHO05D009920 7.7e-14 82.4 119 38.7
Thecc.01G387700 Theobroma cacao HOM05D000104 ORTHO05D009920 2.2e-13 80.9 154 39.6
CiPaw.13G029800 Carya illinoinensis HOM05D000104 ORTHO05D009920 2.9e-13 80.5 87 44.8
Cc02_g04950 Coffea canephora HOM05D000104 ORTHO05D009920 3.8e-13 80.1 94 41.5
Sabra14G0041200 Salix brachista HOM05D000447 ORTHO05D000315 3.8e-13 80.1 88 45.5
MBI04_g27244_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D009920 5.0e-13 79.7 85 56.5
QL04p034761 Quercus lobata HOM05D000104 ORTHO05D009920 1.5e-12 78.2 85 45.9
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 2.5e-12 77.4 88 42.0
SGA_v2.0_scaffold60G20860 Striga asiatica HOM05D000104 ORTHO05D009920 2.5e-12 77.4 123 42.3
Aa31LG1G11380 Aethionema arabicum HOM05D000104 ORTHO05D009920 3.2e-12 77.0 121 42.1
Haze_02747 Corylus avellana HOM05D000104 ORTHO05D009920 4.2e-12 76.6 86 45.3
Ca_23477_v3 Cicer arietinum L. HOM05D000104 ORTHO05D009920 9.4e-12 75.5 95 42.1
Potri.014G056400 Populus trichocarpa HOM05D000104 ORTHO05D009920 9.4e-12 75.5 88 50.0
Lj1P971T48 Lonicera japonica HOM05D000104 ORTHO05D009920 1.6e-11 74.7 85 41.2
Thhalv10006939m.g Eutrema salsugineum HOM05D000104 ORTHO05D009920 2.1e-11 74.3 88 43.2
Glyma.01G073500 Glycine max HOM05D000104 ORTHO05D009920 2.1e-11 74.3 185 42.7
ATR0048G002 Amborella trichopoda HOM05D006740 ORTHO05D008571 2.7e-11 73.9 167 27.5
CARHR000280 Cardamine hirsuta HOM05D000104 ORTHO05D009920 3.6e-11 73.6 87 42.5
SEGI_25780 Sequoiadendron giganteum HOM05D006740 ORTHO05D008571 6.1e-11 72.8 133 33.1
CAN.G388.40 Capsicum annuum HOM05D000104 ORTHO05D009920 1.0e-10 72.0 86 43.0
FAN03G1668 Fragaria x ananassa HOM05D000104 ORTHO05D009920 1.4e-10 71.6 159 35.2
CARHR132360 Cardamine hirsuta HOM05D006740 ORTHO05D008571 1.8e-10 71.2 168 29.8
Aa31LG5G22560 Aethionema arabicum HOM05D006740 ORTHO05D008571 3.9e-10 70.1 168 28.0
Eucgr.D00277 Eucalyptus grandis HOM05D000104 ORTHO05D009920 3.9e-10 70.1 89 48.3
A04p29080 Brassica napus HOM05D000104 ORTHO05D009920 1.1e-09 68.6 253 28.9
Sp1g00260 Schrenkiella parvula HOM05D000104 ORTHO05D009920 1.5e-09 68.2 88 40.9
TPR.G25953 Trifolium pratense HOM05D000104 ORTHO05D009920 1.5e-09 68.2 132 38.6
AL4G33600 Arabidopsis lyrata HOM05D006740 ORTHO05D008571 2.0e-09 67.8 168 28.6
Carub.0004s1913 Capsella rubella HOM05D006740 ORTHO05D008571 2.0e-09 67.8 168 28.6
Sc14g0006060 Simmondsia chinensis HOM05D006740 ORTHO05D008571 2.0e-09 67.8 131 27.5
COL.COLO4_05681 Corchorus olitorius HOM05D006740 ORTHO05D008571 3.3e-09 67.0 125 30.4
MD15G1385700 Malus domestica HOM05D006740 ORTHO05D008571 5.7e-09 66.2 131 28.2
CsaV3_4G027960 Cucumis sativus L. HOM05D000104 ORTHO05D009920 7.4e-09 65.9 92 47.8
Prupe.1G532500 Prunus persica HOM05D006740 ORTHO05D008571 7.4e-09 65.9 131 26.7
RcHm_v2.0_Chr6g0274921 Rosa chinensis HOM05D006740 ORTHO05D008571 7.4e-09 65.9 125 29.6
A03p20550 Brassica napus HOM05D006740 ORTHO05D008571 1.3e-08 65.1 168 27.4
BolC3t14808H Brassica oleracea HOM05D006740 ORTHO05D008571 1.3e-08 65.1 168 27.4
BraA03t11298Z Brassica rapa HOM05D006740 ORTHO05D008571 1.3e-08 65.1 168 27.4
Duzib151G0326 Durio zibethinus HOM05D006740 ORTHO05D008571 1.3e-08 65.1 125 28.8
Gohir.A02G001400 Gossypium hirsutum HOM05D006740 ORTHO05D008571 1.3e-08 65.1 125 29.6
AT2G37230 Arabidopsis thaliana HOM05D006740 ORTHO05D008571 1.7e-08 64.7 162 28.4
C03p24150 Brassica napus HOM05D006740 ORTHO05D008571 2.2e-08 64.3 168 27.4
THA.LOC104806598 Tarenaya hassleriana HOM05D006740 ORTHO05D008571 2.2e-08 64.3 162 26.5
SEGI_00408 Sequoiadendron giganteum HOM05D006740 ORTHO05D009920 3.7e-08 63.5 90 37.8
SEGI_40563 Sequoiadendron giganteum HOM05D006740 ORTHO05D009920 3.7e-08 63.5 90 37.8
CDE05G3024 Ceratophyllum demersum HOM05D006740 ORTHO05D008571 4.8e-08 63.2 125 32.8
MD08G1198800 Malus domestica HOM05D006740 ORTHO05D008571 4.8e-08 63.2 131 27.5
Cfa009828 Carpinus fangiana HOM05D006740 ORTHO05D008571 6.3e-08 62.8 123 27.6
Sp4g19550 Schrenkiella parvula HOM05D006740 ORTHO05D008571 6.3e-08 62.8 166 27.1
Sabra10G0031400 Salix brachista HOM05D006740 ORTHO05D008571 8.2e-08 62.4 128 28.1
Gohir.D02G001700 Gossypium hirsutum HOM05D006740 ORTHO05D008571 1.1e-07 62.0 123 29.3
Gorai.005G002200 Gossypium raimondii HOM05D006740 ORTHO05D008571 1.1e-07 62.0 123 29.3
Ca_02412_v3 Cicer arietinum L. HOM05D006740 ORTHO05D008571 1.4e-07 61.6 131 27.5
Cc02_g24050 Coffea canephora HOM05D006740 ORTHO05D008571 1.4e-07 61.6 126 28.6
Haze_23189 Corylus avellana HOM05D006740 ORTHO05D008571 1.4e-07 61.6 125 26.4
DCAR_017698 Daucus carota HOM05D006740 ORTHO05D008571 1.4e-07 61.6 125 27.2
Eucgr.F02345 Eucalyptus grandis HOM05D006740 ORTHO05D008571 1.4e-07 61.6 129 27.1
Atru.chr5.193 Acer truncatum HOM05D000104 ORTHO05D009920 1.8e-07 61.2 85 51.8
Migut.J00539 Erythranthe guttata HOM05D006740 ORTHO05D008571 1.8e-07 61.2 121 28.9
Potri.010G077400 Populus trichocarpa HOM05D006740 ORTHO05D008571 1.8e-07 61.2 125 27.2
QL11p050841 Quercus lobata HOM05D006740 ORTHO05D008571 1.8e-07 61.2 132 25.8
QL93p2024_0074 Quercus lobata HOM05D006740 ORTHO05D008571 1.8e-07 61.2 132 25.8
MELO3C010518.2 Cucumis melo HOM05D000104 ORTHO05D009920 2.4e-07 60.8 96 36.5
Lalb_Chr07g0187591 Lupinus albus HOM05D006740 ORTHO05D008571 2.4e-07 60.8 125 27.2
Psat1g151920 Pisum sativum HOM05D006740 ORTHO05D008571 2.4e-07 60.8 131 27.5
Sed0004940 Sechium edule HOM05D006740 ORTHO05D008571 2.4e-07 60.8 123 30.9
Zm00001eb229640 Zea mays HOM05D006740 ORTHO05D008571 2.4e-07 60.8 161 27.3
CiPaw.09G174800 Carya illinoinensis HOM05D006740 ORTHO05D008571 3.1e-07 60.5 125 25.6
Ciclev10011107m.g Citrus clementina HOM05D006740 ORTHO05D008571 3.1e-07 60.5 128 28.1
MD02G1218600 Malus domestica HOM05D000104 ORTHO05D009920 3.1e-07 60.5 86 48.8
Sed0019079 Sechium edule HOM05D006740 ORTHO05D008571 3.1e-07 60.5 129 30.2
ClCG06G012850 Citrullus lanatus HOM05D006740 ORTHO05D008571 4.1e-07 60.1 125 29.6
Nn1g00512 Nelumbo nucifera HOM05D006740 ORTHO05D008571 4.1e-07 60.1 125 28.8
Peaxi162Scf00046g00155 Petunia axillaris HOM05D006740 ORTHO05D008571 4.1e-07 60.1 133 28.6
TPR.G37863 Trifolium pratense HOM05D006740 ORTHO05D008571 4.1e-07 60.1 123 27.6
arahy.Tifrunner.gnm1.ann1.H4NKJU Arachis hypogaea HOM05D000104 ORTHO05D009920 5.3e-07 59.7 97 43.3
EL10Ac2g03436 Beta vulgaris HOM05D006740 ORTHO05D008571 5.3e-07 59.7 131 25.2
Lj1g0020796 Lotus japonicus HOM05D000104 ORTHO05D009920 5.3e-07 59.7 134 36.6
Psat3g158640 Pisum sativum HOM05D000104 ORTHO05D009920 5.3e-07 59.7 97 46.4
Nn5g27420 Nelumbo nucifera HOM05D006740 ORTHO05D008571 7.0e-07 59.3 131 26.7
arahy.Tifrunner.gnm1.ann1.W2W9XI Arachis hypogaea HOM05D000104 ORTHO05D009920 9.1e-07 58.9 166 32.5
Os02g0110400 Oryza sativa ssp. japonica HOM05D006740 ORTHO05D008571 9.1e-07 58.9 123 30.9
PSO541G6013 Papaver somniferum HOM05D006740 ORTHO05D008571 9.1e-07 58.9 126 30.2
CANSAT64G0911 Cannabis sativa HOM05D006740 ORTHO05D008571 1.2e-06 58.5 123 29.3
Thhalv10017966m.g Eutrema salsugineum HOM05D006740 ORTHO05D008571 1.2e-06 58.5 123 29.3
FAN18G1734 Fragaria x ananassa HOM05D006740 ORTHO05D008571 1.2e-06 58.5 125 35.2
Atru.BG.215.p Acer truncatum HOM05D006740 ORTHO05D008571 1.6e-06 58.2 125 28.0
Atru.chr8.1857 Acer truncatum HOM05D006740 ORTHO05D008571 1.6e-06 58.2 125 28.0
arahy.Tifrunner.gnm1.ann1.JWX42Q Arachis hypogaea HOM05D000104 ORTHO05D009920 1.6e-06 58.2 127 37.0
Manes.08G089400 Manihot esculenta HOM05D000104 ORTHO05D009920 1.6e-06 58.2 88 46.6
Lsat_1_v5_gn_6_30921 Lactuca sativa HOM05D006740 ORTHO05D008571 2.6e-06 57.4 121 27.3
PSO675G3058 Papaver somniferum HOM05D006740 ORTHO05D008571 2.6e-06 57.4 126 30.2
QL07p044267 Quercus lobata HOM05D006740 ORTHO05D008571 2.6e-06 57.4 132 24.2
TWI14G0059 Tripterygium wilfordii HOM05D000447 ORTHO05D000315 2.6e-06 57.4 95 44.2
MSTRG.19161 Avicennia marina HOM05D006740 ORTHO05D008571 3.5e-06 57.0 116 28.4
CsaV3_1G029410 Cucumis sativus L. HOM05D006740 ORTHO05D008571 3.5e-06 57.0 125 28.0
FvH4_5g34800 Fragaria vesca HOM05D006740 ORTHO05D008571 3.5e-06 57.0 125 34.4
Glyma.05G142300 Glycine max HOM05D006740 ORTHO05D008571 4.5e-06 56.6 125 28.0
Medtr2g437460 Medicago truncatula HOM05D006740 ORTHO05D008571 5.9e-06 56.2 131 26.0
GSVIVG01031674001 Vitis vinifera HOM05D000104 ORTHO05D009920 5.9e-06 56.2 86 47.7
PGR004G1979 Punica granatum HOM05D006740 ORTHO05D008571 7.7e-06 55.8 129 27.1


User provided reference genes

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