Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb091260 Zea mays HOM05D002214 ORTHO05D007367 2.4e-259 898.3 440 100.0
Os11g0182400 Oryza sativa ssp. japonica HOM05D002214 ORTHO05D007367 3.3e-200 701.8 441 78.5
Aqoxy2G00221 Aquilegia oxysepala HOM05D002214 ORTHO05D007367 2.8e-119 433.0 410 50.2
GSVIVG01032215001 Vitis vinifera HOM05D002214 ORTHO05D007367 1.1e-115 421.0 415 51.6
HPP92_021380 Vanilla planifolia HOM05D002214 ORTHO05D007367 1.9e-115 420.2 440 48.0
Cfa010812 Carpinus fangiana HOM05D002214 ORTHO05D007367 1.2e-114 417.5 449 46.8
Duzib138G1340 Durio zibethinus HOM05D002214 ORTHO05D007367 1.8e-113 413.7 421 48.9
Actinidia19424 Actinidia chinensis HOM05D002214 ORTHO05D007367 5.2e-113 412.1 412 49.3
Ciclev10031605m.g Citrus clementina HOM05D002214 ORTHO05D007367 5.2e-113 412.1 429 48.5
Eucgr.G03320 Eucalyptus grandis HOM05D002214 ORTHO05D007367 8.9e-113 411.4 411 48.9
TWI09G0406 Tripterygium wilfordii HOM05D002214 ORTHO05D007367 1.2e-112 411.0 430 49.1
Gorai.004G170100 Gossypium raimondii HOM05D002214 ORTHO05D007367 3.4e-112 409.5 429 48.0
CiPaw.14G003400 Carya illinoinensis HOM05D002214 ORTHO05D007367 7.5e-112 408.3 415 49.2
Gohir.A08G142300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 7.5e-112 408.3 429 48.0
Thecc.01G406200 Theobroma cacao HOM05D002214 ORTHO05D007367 1.7e-111 407.1 435 47.1
Eucgr.G03301 Eucalyptus grandis HOM05D002214 ORTHO05D007367 3.7e-111 406.0 411 48.4
Rhsim07G0058900 Rhododendron simsii HOM05D002214 ORTHO05D007367 4.9e-111 405.6 412 48.3
RcHm_v2.0_Chr1g0318361 Rosa chinensis HOM05D002214 ORTHO05D007367 7.0e-110 401.7 416 47.4
Manes.07G010800 Manihot esculenta HOM05D002214 ORTHO05D007367 7.8e-109 398.3 416 48.3
CAN.G909.6 Capsicum annuum HOM05D002214 ORTHO05D007367 2.9e-108 396.4 416 48.1
Nn7g36334 Nelumbo nucifera HOM05D002214 ORTHO05D007367 2.9e-108 396.4 405 49.1
FAN03G2729 Fragaria x ananassa HOM05D002214 ORTHO05D007367 3.9e-108 396.0 416 46.2
Hma1.2p1_0685F.1_g203260 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 3.9e-108 396.0 415 47.2
Potri.009G056500 Populus trichocarpa HOM05D002214 ORTHO05D007367 1.1e-107 394.4 407 48.2
CANSAT80G0536 Cannabis sativa HOM05D002214 ORTHO05D007367 1.5e-107 394.0 407 46.7
FAN10G2270 Fragaria x ananassa HOM05D002214 ORTHO05D007367 3.3e-107 392.9 414 46.1
Sopen01g034840 Solanum pennellii HOM05D002214 ORTHO05D007367 4.3e-107 392.5 415 47.0
Sed0008197 Sechium edule HOM05D002214 ORTHO05D007367 5.6e-107 392.1 409 48.7
Solyc01g087910.4 Solanum lycopersicum HOM05D002214 ORTHO05D007367 5.6e-107 392.1 415 47.2
THA.LOC104817574 Tarenaya hassleriana HOM05D002214 ORTHO05D007367 9.5e-107 391.3 437 45.5
Sc11g0009040 Simmondsia chinensis HOM05D002214 ORTHO05D007367 1.6e-106 390.6 440 45.9
CsaV3_7G030710 Cucumis sativus L. HOM05D002214 ORTHO05D007367 2.1e-106 390.2 411 47.9
DCAR_022375 Daucus carota HOM05D002214 ORTHO05D007367 3.6e-106 389.4 441 44.2
Lalb_Chr25g0282551 Lupinus albus HOM05D002214 ORTHO05D007367 2.3e-105 386.7 413 49.4
Sp5g10260 Schrenkiella parvula HOM05D002214 ORTHO05D007367 2.9e-103 379.8 407 45.7
Psat5g212440 Pisum sativum HOM05D002214 ORTHO05D007367 1.4e-102 377.5 428 47.0
TAR633G1256 Trochodendron aralioides HOM05D002214 ORTHO05D007367 1.4e-102 377.5 378 49.2
PSO339G3363 Papaver somniferum HOM05D002214 ORTHO05D007367 1.9e-102 377.1 416 46.4
BcaC06g33020 Brassica carinata HOM05D002214 ORTHO05D007367 5.4e-102 375.6 433 42.7
AT3G52030 Arabidopsis thaliana HOM05D002214 ORTHO05D007367 7.0e-102 375.2 413 44.1
arahy.Tifrunner.gnm1.ann1.IP56PK Arachis hypogaea HOM05D002214 ORTHO05D007367 7.0e-102 375.2 407 46.9
Lsat_1_v5_gn_7_35840 Lactuca sativa HOM05D002214 ORTHO05D007367 7.0e-102 375.2 429 42.9
Ca_24837_v3 Cicer arietinum L. HOM05D002214 ORTHO05D007367 1.6e-101 374.0 414 46.1
A03p48610 Brassica napus HOM05D002214 ORTHO05D007367 2.0e-101 373.6 434 43.3
MBI03_g28525_MAGBIO Magnolia biondii HOM05D002214 ORTHO05D007367 2.0e-101 373.6 446 45.1
Medtr3g034210 Medicago truncatula HOM05D002214 ORTHO05D007367 3.5e-101 372.9 415 45.8
arahy.Tifrunner.gnm1.ann1.KRTV89 Arachis hypogaea HOM05D002214 ORTHO05D007367 4.6e-101 372.5 407 46.9
Cc02_g28820 Coffea canephora HOM05D002214 ORTHO05D007367 4.6e-101 372.5 512 38.7
Lj3g0007976 Lotus japonicus HOM05D002214 ORTHO05D007367 4.6e-101 372.5 421 45.6
C07p46730 Brassica napus HOM05D002214 ORTHO05D007367 6.0e-101 372.1 434 42.9
Glyma.11G159230 Glycine max HOM05D002214 ORTHO05D007367 6.0e-101 372.1 413 45.8
MD07G1023200 Malus domestica HOM05D002214 ORTHO05D007367 6.0e-101 372.1 426 45.5
TPR.G14558 Trifolium pratense HOM05D002214 ORTHO05D007367 6.0e-101 372.1 439 44.2
AUR62023095 Chenopodium quinoa HOM05D002214 ORTHO05D007367 1.3e-100 370.9 407 47.7
BcaC06g33377 Brassica carinata HOM05D002214 ORTHO05D007367 3.0e-100 369.8 434 42.9
CARHR161660 Cardamine hirsuta HOM05D002214 ORTHO05D007367 3.9e-100 369.4 413 43.8
SGA_v2.0_scaffold5G02954 Striga asiatica HOM05D002214 ORTHO05D007367 6.6e-100 368.6 444 43.7
vmacro13697 Vaccinium macrocarpon HOM05D002214 ORTHO05D007367 6.6e-100 368.6 466 42.7
Thhalv10010397m.g Eutrema salsugineum HOM05D002214 ORTHO05D007367 1.1e-99 367.9 406 43.8
PSO384G3385 Papaver somniferum HOM05D002214 ORTHO05D007367 2.5e-99 366.7 424 44.6
Migut.N01800 Erythranthe guttata HOM05D002214 ORTHO05D007367 3.3e-99 366.3 453 42.4
Prupe.2G024000 Prunus persica HOM05D002214 ORTHO05D007367 3.3e-99 366.3 413 46.0
Carub.0005s1835 Capsella rubella HOM05D002214 ORTHO05D007367 1.6e-98 364.0 416 44.5
Nitab4.5_0001244g0060 Nicotiana tabacum HOM05D002214 ORTHO05D007367 8.0e-98 361.7 405 45.9
BolC7t45191H Brassica oleracea HOM05D002214 ORTHO05D007367 1.8e-97 360.5 451 41.7
CSS0000146 Camellia sinensis var. sinensis HOM05D002214 ORTHO05D007367 2.3e-97 360.1 432 44.7
QL04p010195 Quercus lobata HOM05D002214 ORTHO05D007367 2.3e-97 360.1 427 43.8
unitig_22.g5896 Utricularia gibba HOM05D002214 ORTHO05D007367 2.3e-97 360.1 418 44.0
ECA236G0637 Erigeron canadensis HOM05D002214 ORTHO05D001664 8.9e-97 358.2 426 44.8
Phvul.005G035100 Phaseolus vulgaris HOM05D002214 ORTHO05D007367 7.5e-96 355.1 409 46.9
Atru.chr11.2515 Acer truncatum HOM05D002214 ORTHO05D007367 1.3e-95 354.4 406 44.3
Peaxi162Scf01270g00126 Petunia axillaris HOM05D002214 ORTHO05D007367 2.2e-95 353.6 453 42.4
VMungo1217G0001 Vigna mungo HOM05D002214 ORTHO05D007367 2.2e-95 353.6 408 45.6
ATR0782G063 Amborella trichopoda HOM05D002214 ORTHO05D007367 1.1e-94 351.3 407 45.5
AL5G32570 Arabidopsis lyrata HOM05D002214 ORTHO05D007367 1.4e-94 350.9 424 41.7
Gohir.D08G163300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 1.9e-94 350.5 309 53.1
BraA03t13966Z Brassica rapa HOM05D002214 ORTHO05D007367 1.2e-90 337.8 436 40.4
FvH4_7g01770 Fragaria vesca HOM05D002214 ORTHO05D007367 6.2e-90 335.5 308 50.3
PGR031G3638 Punica granatum HOM05D002214 ORTHO05D007367 3.4e-88 329.7 451 41.5
Ah.16g100650 Amaranthus hybridus HOM05D002214 ORTHO05D007367 2.5e-83 313.5 344 44.2
ClCG09G004430 Citrullus lanatus HOM05D002214 ORTHO05D007367 9.6e-83 311.6 366 44.0
Dinv07431 Davidia involucrata HOM05D002214 ORTHO05D005113 1.6e-82 310.8 310 48.4
Nitab4.5_0008942g0050 Nicotiana tabacum HOM05D002214 ORTHO05D007367 1.3e-79 301.2 416 41.1
QL04p010150 Quercus lobata HOM05D002214 ORTHO05D007367 2.1e-77 293.9 351 43.3
EL10Ac2g04369 Beta vulgaris HOM05D002214 ORTHO05D007367 1.0e-76 291.6 414 40.1
FAN24G1013 Fragaria x ananassa HOM05D002214 ORTHO05D007367 9.0e-73 278.5 435 40.7
FvH4_2g17890 Fragaria vesca HOM05D002214 ORTHO05D007367 2.0e-72 277.3 435 40.5
Oeu051405.1 Olea europaea HOM05D002214 ORTHO05D007367 3.8e-71 273.1 322 44.7
FAN24G2408 Fragaria x ananassa HOM05D002214 ORTHO05D007367 3.0e-68 263.5 445 38.4
FAN15G3441 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.6e-66 257.7 433 39.3
FAN27G1816 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.4e-65 254.6 433 39.0
HanXRQChr04g0119861 Helianthus annuus HOM05D002214 ORTHO05D007367 3.4e-64 250.0 278 45.0
QL04p010068 Quercus lobata HOM05D002214 ORTHO05D007367 1.1e-59 235.0 253 45.5
AUR62009418 Chenopodium quinoa HOM05D002214 ORTHO05D007367 4.3e-59 233.0 419 34.6
SalBow6G2835 Salvia bowleyana HOM05D002214 ORTHO05D007367 1.3e-58 231.5 276 42.0
MELO3C023585.2 Cucumis melo HOM05D002214 ORTHO05D007367 3.1e-57 226.9 341 37.0
FAN27G1164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 6.7e-52 209.1 409 34.2
Haze_03149 Corylus avellana HOM05D002214 ORTHO05D007367 4.3e-51 206.5 403 34.0
Haze_03152 Corylus avellana HOM05D002214 ORTHO05D007367 4.3e-51 206.5 403 34.0
FAN06G2164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 5.7e-51 206.1 246 41.5
CDE04G0429 Ceratophyllum demersum HOM05D002214 ORTHO05D007367 1.3e-50 204.9 192 50.5
AagrBONN_evm.TU.Sc2ySwM_344.2511 Anthoceros agrestis HOM05D002214 ORTHO05D007367 5.0e-47 193.0 447 27.5
Cpa.g.sc125.50 Carica papaya HOM05D002214 ORTHO05D007367 8.4e-47 192.2 196 48.0
RcHm_v2.0_Chr6g0283161 Rosa chinensis HOM05D002214 ORTHO05D007367 2.5e-46 190.7 307 39.4
QL04p010120 Quercus lobata HOM05D002214 ORTHO05D007367 8.7e-44 182.2 208 45.2
Aa31LG10G14890 Aethionema arabicum HOM05D002214 ORTHO05D007367 3.1e-41 173.7 231 39.0
Pp3c8_19810 Physcomitrium patens HOM05D002214 ORTHO05D007367 2.6e-40 170.6 339 29.8
FvH4_2g17910 Fragaria vesca HOM05D002214 ORTHO05D007367 4.5e-40 169.9 232 40.9
FAN24G3278 Fragaria x ananassa HOM05D002214 ORTHO05D007367 4.5e-40 169.9 232 40.9
Cpa.g.sc125.51 Carica papaya HOM05D002214 ORTHO05D007367 3.8e-39 166.8 223 43.0
Lj9A641T67 Lonicera japonica HOM05D002214 ORTHO05D007367 2.7e-37 160.6 283 36.4
Hma1.2p1_0685F.1_g203270 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 3.9e-36 156.8 149 51.0
MD07G1016900 Malus domestica HOM05D002214 ORTHO05D007367 8.2e-34 149.1 226 38.5
Hund16633 Selenicereus undatus HOM05D002214 ORTHO05D007367 1.8e-33 147.9 147 48.3
SMO137G0282 Selaginella moellendorffii HOM05D002214 ORTHO05D007367 5.5e-30 136.3 348 29.9
FAN06G4994 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.4e-28 131.7 133 47.4
COL.COLO4_12334 Corchorus olitorius HOM05D000031 ORTHO05D000030 3.9e-28 130.2 295 29.5
SEGI_30351 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 2.0e-27 127.9 140 38.6
Mapoly0009s0234 Marchantia polymorpha HOM05D002214 ORTHO05D007367 2.2e-26 124.4 327 27.8
CBR_g46897 Chara braunii HOM05D002214 ORTHO05D007367 6.3e-26 122.9 384 22.9
Hund16632 Selenicereus undatus HOM05D002214 ORTHO05D007367 1.8e-25 121.3 149 45.0
Aa31LG10G14900 Aethionema arabicum HOM05D002214 ORTHO05D007367 2.0e-24 117.9 114 49.1
SEGI_07097 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 4.0e-20 103.6 133 41.4
Oeu016638.1 Olea europaea HOM05D002214 ORTHO05D007367 3.1e-17 94.0 101 46.5
Thecc.01G405700 Theobroma cacao HOM05D002214 ORTHO05D007367 5.3e-17 93.2 107 43.9
Thecc.01G405800 Theobroma cacao HOM05D002214 ORTHO05D007367 2.7e-16 90.9 72 52.8
Hma1.2p1_0685F.1_g203250 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 5.4e-09 66.6 99 37.4
Duzib133G0745 Durio zibethinus HOM05D002214 ORTHO05D007367 5.9e-08 63.2 61 45.9
FAN27G0866 Fragaria x ananassa HOM05D002214 ORTHO05D007367 2.5e-06 57.8 78 38.5


User provided reference genes

Program Settings