Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb078460 Zea mays HOM05D004818 ORTHO05D005444 2.7e-21 104.4 52 100.0
Zm00001eb425810 Zea mays HOM05D004818 ORTHO05D005444 6.3e-18 93.2 52 88.5
Os04g0117100 Oryza sativa ssp. japonica HOM05D004818 ORTHO05D005444 2.2e-15 84.7 53 83.0
BcaB08g36904 Brassica carinata HOM05D004818 ORTHO05D005444 3.4e-11 70.9 52 69.2
A10p23550 Brassica napus HOM05D004818 ORTHO05D005444 8.3e-10 66.2 52 65.4
BraA10t44421Z Brassica rapa HOM05D004818 ORTHO05D005444 8.3e-10 66.2 52 65.4
CARHR197990 Cardamine hirsuta HOM05D004818 ORTHO05D005444 1.8e-09 65.1 52 63.5
TWI79G1427 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 1.8e-09 65.1 50 70.0
Duzib248G1544 Durio zibethinus HOM05D004818 ORTHO05D005444 4.1e-09 63.9 50 68.0
BcaB08g36903 Brassica carinata HOM05D004818 ORTHO05D005444 7.0e-09 63.2 48 66.7
BcaC04g18956 Brassica carinata HOM05D004818 ORTHO05D005444 7.0e-09 63.2 48 66.7
C09p61780 Brassica napus HOM05D004818 ORTHO05D005444 7.0e-09 63.2 48 66.7
BolC9t59016H Brassica oleracea HOM05D004818 ORTHO05D005444 7.0e-09 63.2 48 66.7
A03p07110 Brassica napus HOM05D004818 ORTHO05D005444 9.1e-09 62.8 53 64.2
C03p08100 Brassica napus HOM05D004818 ORTHO05D005444 9.1e-09 62.8 53 64.2
BolC3t13307H Brassica oleracea HOM05D004818 ORTHO05D005444 9.1e-09 62.8 53 64.2
BraA03t10033Z Brassica rapa HOM05D004818 ORTHO05D005444 9.1e-09 62.8 53 64.2
MELO3C013404.2 Cucumis melo HOM05D004818 ORTHO05D005444 9.1e-09 62.8 54 64.8
CsaV3_7G000550 Cucumis sativus L. HOM05D004818 ORTHO05D005444 9.1e-09 62.8 54 64.8
Sed0018748 Sechium edule HOM05D004818 ORTHO05D005444 9.1e-09 62.8 54 64.8
Potri.002G024900 Populus trichocarpa HOM05D004818 ORTHO05D005444 1.2e-08 62.4 50 68.0
CiPaw.05G074500 Carya illinoinensis HOM05D004818 ORTHO05D005444 1.6e-08 62.0 50 66.0
COL.COLO4_10615 Corchorus olitorius HOM05D004818 ORTHO05D005444 1.6e-08 62.0 50 68.0
Lalb_Chr19g0139031 Lupinus albus HOM05D004818 ORTHO05D005444 1.6e-08 62.0 50 68.0
Manes.18G015600 Manihot esculenta HOM05D004818 ORTHO05D005444 1.6e-08 62.0 50 70.0
Potri.005G236500 Populus trichocarpa HOM05D004818 ORTHO05D005444 1.6e-08 62.0 54 63.0
CANSAT11G1677 Cannabis sativa HOM05D004818 ORTHO05D005444 2.0e-08 61.6 50 66.0
Sp6g28750 Schrenkiella parvula HOM05D004818 ORTHO05D005444 2.0e-08 61.6 54 61.1
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 2.7e-08 61.2 50 66.0
GSVIVG01009863001 Vitis vinifera HOM05D004818 ORTHO05D005444 3.5e-08 60.8 47 61.7
Aa31LG5G12500 Aethionema arabicum HOM05D004818 ORTHO05D005444 4.5e-08 60.5 50 64.0
Cfa005123 Carpinus fangiana HOM05D004818 ORTHO05D005444 4.5e-08 60.5 50 64.0
Manes.04G082300 Manihot esculenta HOM05D004818 ORTHO05D005444 4.5e-08 60.5 54 61.1
Thecc.02G073200 Theobroma cacao HOM05D004818 ORTHO05D005444 4.5e-08 60.5 50 66.0
Duzib052G0912 Durio zibethinus HOM05D004818 ORTHO05D005444 5.9e-08 60.1 54 63.0
Gohir.D13G090600 Gossypium hirsutum HOM05D004818 ORTHO05D005444 5.9e-08 60.1 54 63.0
Gorai.001G244100 Gossypium raimondii HOM05D004818 ORTHO05D005444 5.9e-08 60.1 54 63.0
HanXRQChr17g0551041 Helianthus annuus HOM05D004818 ORTHO05D005444 5.9e-08 60.1 50 64.0
Lalb_Chr03g0025281 Lupinus albus HOM05D004818 ORTHO05D005444 5.9e-08 60.1 50 64.0
Potri.004G164066 Populus trichocarpa HOM05D004818 ORTHO05D005444 5.9e-08 60.1 50 64.0
Sed0003347 Sechium edule HOM05D004818 ORTHO05D005444 5.9e-08 60.1 54 61.1
TWI31G1300 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 5.9e-08 60.1 50 66.0
VMungo1127G0843 Vigna mungo HOM05D004818 ORTHO05D005444 5.9e-08 60.1 50 68.0
AL3G11130 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 7.7e-08 59.7 50 64.0
CiPaw.09G132900 Carya illinoinensis HOM05D004818 ORTHO05D005444 7.7e-08 59.7 50 66.0
Ca_09579_v3 Cicer arietinum L. HOM05D004818 ORTHO05D005444 7.7e-08 59.7 50 64.0
ClCG05G018500 Citrullus lanatus HOM05D004818 ORTHO05D005444 7.7e-08 59.7 50 66.0
Thhalv10015231m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 7.7e-08 59.7 54 59.3
Lj3g0020574 Lotus japonicus HOM05D004818 ORTHO05D005444 7.7e-08 59.7 50 62.0
Sed0012644 Sechium edule HOM05D004818 ORTHO05D005444 7.7e-08 59.7 50 66.0
THA.LOC104821019 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 7.7e-08 59.7 50 60.0
THA.LOC109116196 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 7.7e-08 59.7 51 66.7
AT5G15320 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 1.0e-07 59.3 54 59.3
A03p32690 Brassica napus HOM05D004818 ORTHO05D005444 1.0e-07 59.3 50 62.0
A05p44830 Brassica napus HOM05D004818 ORTHO05D005444 1.0e-07 59.3 50 62.0
C03p39790 Brassica napus HOM05D004818 ORTHO05D005444 1.0e-07 59.3 50 62.0
BolC3t16243H Brassica oleracea HOM05D004818 ORTHO05D005444 1.0e-07 59.3 50 62.0
Carub.0003s0104 Capsella rubella HOM05D004818 ORTHO05D005444 1.0e-07 59.3 50 62.0
Carub.0006s1351 Capsella rubella HOM05D004818 ORTHO05D005444 1.0e-07 59.3 54 59.3
CiPaw.06G127200 Carya illinoinensis HOM05D004818 ORTHO05D005444 1.0e-07 59.3 50 66.0
Ciclev10003088m.g Citrus clementina HOM05D004818 ORTHO05D005444 1.0e-07 59.3 50 66.0
Phvul.011G038100 Phaseolus vulgaris HOM05D004818 ORTHO05D005444 1.0e-07 59.3 50 66.0
Gohir.D04G165300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 1.3e-07 58.9 50 64.0
PGR042G0239 Punica granatum HOM05D004818 ORTHO05D005444 1.3e-07 58.9 35 85.7
Rhsim11G0184800 Rhododendron simsii HOM05D004818 ORTHO05D005444 1.3e-07 58.9 36 80.6
BcaC05g30384 Brassica carinata HOM05D004818 ORTHO05D005444 1.7e-07 58.5 50 62.0
BcaC05g30492 Brassica carinata HOM05D004818 ORTHO05D005444 1.7e-07 58.5 50 62.0
CsaV3_3G045680 Cucumis sativus L. HOM05D004818 ORTHO05D005444 1.7e-07 58.5 42 69.0
Migut.B00126 Erythranthe guttata HOM05D004818 ORTHO05D005444 1.7e-07 58.5 50 62.0
Migut.N01294 Erythranthe guttata HOM05D004818 ORTHO05D005444 1.7e-07 58.5 54 59.3
Eucgr.G01742 Eucalyptus grandis HOM05D004818 ORTHO05D005444 1.7e-07 58.5 50 64.0
FAN15G2220 Fragaria x ananassa HOM05D012912 ORTHO05D005444 1.7e-07 58.5 34 82.4
RcHm_v2.0_Chr6g0268521 Rosa chinensis HOM05D004818 ORTHO05D005444 1.7e-07 58.5 49 65.3
Sp3g00990 Schrenkiella parvula HOM05D004818 ORTHO05D005444 1.7e-07 58.5 50 62.0
Sed0015314 Sechium edule HOM05D004818 ORTHO05D005444 1.7e-07 58.5 50 64.0
TAR381G0131 Trochodendron aralioides HOM05D004818 ORTHO05D005444 1.7e-07 58.5 50 66.0
Ciclev10029771m.g Citrus clementina HOM05D004818 ORTHO05D005444 2.2e-07 58.2 50 64.0
Glyma.12G036000 Glycine max HOM05D004818 ORTHO05D005444 2.2e-07 58.2 50 62.0
Gohir.A04G123300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 2.9e-07 57.8 50 62.0
Gohir.A13G086700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 2.9e-07 57.8 50 64.0
Lsat_1_v5_gn_8_127140 Lactuca sativa HOM05D004818 ORTHO05D005444 2.9e-07 57.8 50 62.0
Prupe.1G368600 Prunus persica HOM05D004818 ORTHO05D005444 2.9e-07 57.8 50 64.0
Prupe.8G082400 Prunus persica HOM05D004818 ORTHO05D005444 2.9e-07 57.8 44 65.9
Sabra09G0096800 Salix brachista HOM05D004818 ORTHO05D005444 2.9e-07 57.8 52 59.6
TAR625G1092 Trochodendron aralioides HOM05D004818 ORTHO05D005444 2.9e-07 57.8 50 64.0
vmacro17409 Vaccinium macrocarpon HOM05D004818 ORTHO05D005444 2.9e-07 57.8 39 74.4
Atru.chr10.813 Acer truncatum HOM05D004818 ORTHO05D005444 3.8e-07 57.4 49 63.3
AL6G26200 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 3.8e-07 57.4 54 57.4
Cpa.g.sc150.3 Carica papaya HOM05D004818 ORTHO05D005444 3.8e-07 57.4 49 65.3
FAN15G1739 Fragaria x ananassa HOM05D004818 ORTHO05D005444 3.8e-07 57.4 50 62.0
MD10G1061700 Malus domestica HOM05D004818 ORTHO05D005444 3.8e-07 57.4 50 64.0
BolC5t35118H Brassica oleracea HOM05D004818 ORTHO05D005444 5.0e-07 57.0 50 60.0
Gohir.A12G040700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 5.0e-07 57.0 50 64.0
Lalb_Chr01g0002101 Lupinus albus HOM05D004818 ORTHO05D005444 5.0e-07 57.0 49 63.3
Medtr4g072130 Medicago truncatula HOM05D004818 ORTHO05D005444 5.0e-07 57.0 34 82.4
RcHm_v2.0_Chr6g0302511 Rosa chinensis HOM05D004818 ORTHO05D005444 5.0e-07 57.0 50 62.0
C09p75420 Brassica napus HOM05D004818 ORTHO05D005444 6.5e-07 56.6 54 57.4
arahy.Tifrunner.gnm1.ann1.LS9ND1 Arachis hypogaea HOM05D004818 ORTHO05D005444 8.5e-07 56.2 34 82.4
BraA03t12437Z Brassica rapa HOM05D004818 ORTHO05D005444 8.5e-07 56.2 37 70.3
CARHR075920 Cardamine hirsuta HOM05D004818 ORTHO05D005444 8.5e-07 56.2 37 70.3
Lsat_1_v5_gn_4_67521 Lactuca sativa HOM05D004818 ORTHO05D005444 8.5e-07 56.2 50 64.0
MD00G1066700 Malus domestica HOM05D004818 ORTHO05D005444 8.5e-07 56.2 42 69.0
PGR142G0584 Punica granatum HOM05D004818 ORTHO05D005444 8.5e-07 56.2 50 60.0
PGSC0003DMG400004424 Solanum tuberosum HOM05D004818 ORTHO05D005444 8.5e-07 56.2 50 62.0
MELO3C003769.2 Cucumis melo HOM05D004818 ORTHO05D005444 1.1e-06 55.8 34 79.4
Duzib132G0136 Durio zibethinus HOM05D004818 ORTHO05D005444 1.1e-06 55.8 34 79.4
Thhalv10021899m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 1.1e-06 55.8 49 61.2
Nn6g32305 Nelumbo nucifera HOM05D004818 ORTHO05D005444 1.1e-06 55.8 34 82.4
Oeu020676.1 Olea europaea HOM05D004818 ORTHO05D005444 1.1e-06 55.8 35 77.1
Solyc01g110540.3 Solanum lycopersicum HOM05D004818 ORTHO05D005444 1.1e-06 55.8 50 62.0
PGSC0003DMG400001656 Solanum tuberosum HOM05D004818 ORTHO05D005444 1.1e-06 55.8 50 62.0
CAN.G104.4 Capsicum annuum HOM05D004818 ORTHO05D005444 1.5e-06 55.5 50 64.0
Nn5g29275 Nelumbo nucifera HOM05D004818 ORTHO05D005444 1.5e-06 55.5 34 79.4
TWI75G0908 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 1.5e-06 55.5 48 62.5
TAR628G1422 Trochodendron aralioides HOM05D004818 ORTHO05D005444 1.5e-06 55.5 50 62.0
Atru.chr5.3177 Acer truncatum HOM05D004818 ORTHO05D005444 1.9e-06 55.1 50 60.0
BcaC01g04504 Brassica carinata HOM05D004818 ORTHO05D005444 1.9e-06 55.1 35 74.3
ClCG02G004430 Citrullus lanatus HOM05D004818 ORTHO05D005444 1.9e-06 55.1 34 79.4
Eucgr.I01336 Eucalyptus grandis HOM05D004818 ORTHO05D005444 1.9e-06 55.1 50 60.0
Potri.009G125832 Populus trichocarpa HOM05D004818 ORTHO05D005444 1.9e-06 55.1 52 57.7
Atru.chr13.327 Acer truncatum HOM05D004818 ORTHO05D005444 2.5e-06 54.7 35 77.1
Gohir.D12G031701 Gossypium hirsutum HOM05D004818 ORTHO05D005444 2.5e-06 54.7 38 71.1
PSO541G2816 Papaver somniferum HOM05D004818 ORTHO05D005444 2.5e-06 54.7 43 60.5
Rhsim05G0067400 Rhododendron simsii HOM05D004818 ORTHO05D005444 2.5e-06 54.7 37 70.3
Sc18g0005450 Simmondsia chinensis HOM05D004818 ORTHO05D005444 2.5e-06 54.7 39 69.2
BraA05t23174Z Brassica rapa HOM05D004818 ORTHO05D005444 3.2e-06 54.3 35 74.3
CSS0030409 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 3.2e-06 54.3 34 76.5
FvH4_2g40200 Fragaria vesca HOM05D004818 ORTHO05D005444 3.2e-06 54.3 33 78.8
FvH4_2g40204 Fragaria vesca HOM05D004818 ORTHO05D005444 3.2e-06 54.3 34 79.4
AT3G01130 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 4.2e-06 53.9 34 76.5
CAN.G1329.6 Capsicum annuum HOM05D004818 ORTHO05D005444 5.5e-06 53.5 50 62.0
Pp3c2_20190 Physcomitrium patens HOM05D004818 ORTHO05D005444 7.2e-06 53.1 37 70.3


User provided reference genes

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