Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb068850 Zea mays HOM05D006061 ORTHO05D007450 8.5e-59 230.3 134 100.0
Zm00001eb120120 Zea mays HOM05D006061 ORTHO05D007450 1.5e-47 193.0 101 98.0
Zm00001eb428270 Zea mays HOM05D006061 ORTHO05D007450 1.5e-47 193.0 101 98.0
Zm00001eb008990 Zea mays HOM05D006061 ORTHO05D007450 3.5e-44 181.8 101 93.1
Zm00001eb399320 Zea mays HOM05D000103 ORTHO05D007450 2.5e-42 175.6 101 89.1
TAR365G1230 Trochodendron aralioides HOM05D006061 ORTHO05D007450 6.8e-16 87.8 97 50.5
Potri.014G194800 Populus trichocarpa HOM05D006061 ORTHO05D007450 5.8e-15 84.7 93 49.5
Ciclev10019392m.g Citrus clementina HOM05D006061 ORTHO05D007450 7.6e-15 84.3 93 48.4
Sabra14G0142900 Salix brachista HOM05D006061 ORTHO05D007450 7.6e-15 84.3 93 49.5
Atru.chr5.1926 Acer truncatum HOM05D006061 ORTHO05D007450 3.7e-14 82.0 92 46.7
Nn1g03086 Nelumbo nucifera HOM05D006061 ORTHO05D007450 6.4e-14 81.3 97 50.5
GSVIVG01028489001 Vitis vinifera HOM05D006061 ORTHO05D007450 1.4e-13 80.1 96 46.9
RcHm_v2.0_Chr6g0285561 Rosa chinensis HOM05D006061 ORTHO05D007450 3.2e-13 79.0 96 45.8
MBI07_g08916_MAGBIO Magnolia biondii HOM05D006061 ORTHO05D007450 4.1e-13 78.6 97 45.4
Prupe.8G209500 Prunus persica HOM05D006061 ORTHO05D007450 5.4e-13 78.2 92 45.7
Cpa.g.sc8.207 Carica papaya HOM05D006061 ORTHO05D007450 7.1e-13 77.8 92 50.0
Duzib138G1183 Durio zibethinus HOM05D006061 ORTHO05D007450 9.2e-13 77.4 92 48.9
CSS0041718 Camellia sinensis var. sinensis HOM05D006061 ORTHO05D007450 2.1e-12 76.3 96 42.7
THA.LOC104814544 Tarenaya hassleriana HOM05D006061 ORTHO05D007450 2.1e-12 76.3 95 48.4
MD10G1171000 Malus domestica HOM05D006061 ORTHO05D007450 2.7e-12 75.9 96 42.7
Sed0025129 Sechium edule HOM05D006061 ORTHO05D007450 2.7e-12 75.9 96 45.8
arahy.Tifrunner.gnm1.ann1.4WTK5H Arachis hypogaea HOM05D006061 ORTHO05D007450 3.5e-12 75.5 91 48.4
arahy.Tifrunner.gnm1.ann1.J8EIPB Arachis hypogaea HOM05D006061 ORTHO05D007450 3.5e-12 75.5 91 48.4
Gohir.A11G135100 Gossypium hirsutum HOM05D006061 ORTHO05D007450 4.6e-12 75.1 93 45.2
Lalb_Chr01g0019411 Lupinus albus HOM05D006061 ORTHO05D007450 4.6e-12 75.1 91 47.3
Glyma.19G171100 Glycine max HOM05D006061 ORTHO05D007450 6.0e-12 74.7 88 47.7
Thecc.01G244800 Theobroma cacao HOM05D006061 ORTHO05D007450 6.0e-12 74.7 92 46.7
Gohir.D11G141300 Gossypium hirsutum HOM05D006061 ORTHO05D007450 7.8e-12 74.3 93 45.2
Gorai.007G151600 Gossypium raimondii HOM05D006061 ORTHO05D007450 7.8e-12 74.3 93 45.2
vmacro02729 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 7.8e-12 74.3 96 45.8
COL.COLO4_08163 Corchorus olitorius HOM05D006061 ORTHO05D007450 1.7e-11 73.2 93 44.1
PGR083G1193 Punica granatum HOM05D006061 ORTHO05D007450 1.7e-11 73.2 92 42.4
CsaV3_7G025440 Cucumis sativus L. HOM05D006061 ORTHO05D007450 2.3e-11 72.8 96 43.8
FAN27G0211 Fragaria x ananassa HOM05D006061 ORTHO05D007450 2.3e-11 72.8 88 47.7
Rhsim13G0041800 Rhododendron simsii HOM05D006061 ORTHO05D000758 2.3e-11 72.8 96 45.8
PGSC0003DMG401020085 Solanum tuberosum HOM05D006061 ORTHO05D007450 2.3e-11 72.8 92 42.4
MELO3C024149.2 Cucumis melo HOM05D006061 ORTHO05D007450 3.0e-11 72.4 96 43.8
FvH4_2g19870 Fragaria vesca HOM05D006061 ORTHO05D007450 3.0e-11 72.4 88 47.7
Manes.12G040800 Manihot esculenta HOM05D006061 ORTHO05D007450 3.0e-11 72.4 93 45.2
PSO170G3920 Papaver somniferum HOM05D006061 ORTHO05D007450 3.0e-11 72.4 97 44.3
Phvul.001G168300 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 3.9e-11 72.0 93 44.1
Cfa002517 Carpinus fangiana HOM05D006061 ORTHO05D007450 5.1e-11 71.6 91 47.3
CANSAT01G1389 Cannabis sativa HOM05D006061 ORTHO05D007450 6.6e-11 71.2 94 41.5
ClCG09G009420 Citrullus lanatus HOM05D006061 ORTHO05D007450 6.6e-11 71.2 96 43.8
Solyc06g083640.4 Solanum lycopersicum HOM05D006061 ORTHO05D007450 6.6e-11 71.2 92 41.3
Sopen06g035030 Solanum pennellii HOM05D006061 ORTHO05D007450 8.6e-11 70.9 92 41.3
Lj1g0026990 Lotus japonicus HOM05D006061 ORTHO05D007450 1.1e-10 70.5 86 47.7
VMungo1383G3365 Vigna mungo HOM05D006061 ORTHO05D007450 1.9e-10 69.7 93 43.0
Aqoxy5G00054 Aquilegia oxysepala HOM05D006061 ORTHO05D007450 4.3e-10 68.6 98 46.9
Lj1A80G16 Lonicera japonica HOM05D006061 ORTHO05D007450 4.3e-10 68.6 96 40.6
BcaC06g36697 Brassica carinata HOM05D006061 ORTHO05D007450 7.3e-10 67.8 95 45.3
C07p00980 Brassica napus HOM05D006061 ORTHO05D007450 7.3e-10 67.8 95 45.3
BolC7t40535H Brassica oleracea HOM05D006061 ORTHO05D007450 7.3e-10 67.8 95 45.3
AUR62008856 Chenopodium quinoa HOM05D006061 ORTHO05D007450 7.3e-10 67.8 90 44.4
AUR62025388 Chenopodium quinoa HOM05D006061 ORTHO05D007450 7.3e-10 67.8 90 44.4
Glyma.03G169900 Glycine max HOM05D006061 ORTHO05D007450 7.3e-10 67.8 88 43.2
Hund05498 Selenicereus undatus HOM05D006061 ORTHO05D007450 7.3e-10 67.8 90 44.4
TWI59G0704 Tripterygium wilfordii HOM05D006061 ORTHO05D007450 7.3e-10 67.8 98 40.8
EL10Ac7g17761 Beta vulgaris HOM05D006061 ORTHO05D007450 9.6e-10 67.4 89 46.1
A07p00530 Brassica napus HOM05D006061 ORTHO05D007450 9.6e-10 67.4 95 45.3
BraA07t27847Z Brassica rapa HOM05D006061 ORTHO05D007450 9.6e-10 67.4 95 45.3
CiPaw.04G108700 Carya illinoinensis HOM05D006061 ORTHO05D007450 9.6e-10 67.4 91 45.1
Eucgr.H00824 Eucalyptus grandis HOM05D006061 ORTHO05D007450 9.6e-10 67.4 91 44.0
Sp3g33450 Schrenkiella parvula HOM05D006061 ORTHO05D007450 9.6e-10 67.4 74 48.6
MSTRG.12506 Avicennia marina HOM05D006061 ORTHO05D007450 1.6e-09 66.6 93 39.8
BcaB03g16813 Brassica carinata HOM05D006061 ORTHO05D007450 1.6e-09 66.6 95 44.2
Actinidia30104 Actinidia chinensis HOM05D006061 ORTHO05D007450 2.1e-09 66.2 96 39.6
Migut.N02246 Erythranthe guttata HOM05D006061 ORTHO05D007450 4.7e-09 65.1 93 40.9
Ca_08767_v3 Cicer arietinum L. HOM05D006061 ORTHO05D007450 6.2e-09 64.7 88 44.3
SGA_v2.0_scaffold3G01591 Striga asiatica HOM05D006061 ORTHO05D007450 6.2e-09 64.7 90 40.0
Thhalv10001935m.g Eutrema salsugineum HOM05D006061 ORTHO05D007450 8.1e-09 64.3 74 47.3
Haze_24749 Corylus avellana HOM05D006061 ORTHO05D007450 1.1e-08 63.9 90 45.6
Sc05g0002480 Simmondsia chinensis HOM05D006061 ORTHO05D007450 1.4e-08 63.5 89 42.7
Nitab4.5_0006211g0030 Nicotiana tabacum HOM05D006061 ORTHO05D007450 3.1e-08 62.4 96 38.5
HanXRQChr13g0409031 Helianthus annuus HOM05D006061 ORTHO05D007450 4.0e-08 62.0 92 39.1
Oeu039640.1 Olea europaea HOM05D006061 ORTHO05D007450 4.0e-08 62.0 92 39.1
Carub.0003s3454 Capsella rubella HOM05D006061 ORTHO05D007450 5.2e-08 61.6 78 47.4
Peaxi162Scf00517g00313 Petunia axillaris HOM05D006061 ORTHO05D007450 6.8e-08 61.2 92 38.0
SalBow6G4925 Salvia bowleyana HOM05D006061 ORTHO05D007450 6.8e-08 61.2 93 37.6
ATR0787G120 Amborella trichopoda HOM05D006061 ORTHO05D007450 1.2e-07 60.5 93 38.7
AL3G47870 Arabidopsis lyrata HOM05D006061 ORTHO05D007450 1.2e-07 60.5 81 42.0
Nitab4.5_0002085g0150 Nicotiana tabacum HOM05D006061 ORTHO05D007450 1.2e-07 60.5 96 38.5
Ah.15g093400 Amaranthus hybridus HOM05D006061 ORTHO05D007450 1.5e-07 60.1 89 41.6
AT2G20210 Arabidopsis thaliana HOM05D006061 ORTHO05D007450 1.5e-07 60.1 81 44.4
Aa31LG8G17130 Aethionema arabicum HOM05D006061 ORTHO05D007450 5.8e-07 58.2 92 43.5
Psat3g050240 Pisum sativum HOM05D006061 ORTHO05D007450 5.8e-07 58.2 90 42.2
CARHR110700 Cardamine hirsuta HOM05D006061 ORTHO05D007450 9.9e-07 57.4 92 41.3
SEGI_05721 Sequoiadendron giganteum HOM05D006061 ORTHO05D007450 2.2e-06 56.2 89 37.1
CAN.G771.51 Capsicum annuum HOM05D006061 ORTHO05D007450 6.4e-06 54.7 110 32.7


User provided reference genes

Program Settings