Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb015220 Zea mays HOM05D007267 ORTHO05D009053 4.1e-72 274.6 140 100.0
FAN21G3895 Fragaria x ananassa HOM05D007267 ORTHO05D009053 1.8e-27 126.3 98 62.2
FAN16G2508 Fragaria x ananassa HOM05D007267 ORTHO05D009053 6.9e-27 124.4 98 61.2
CiPaw.13G125300 Carya illinoinensis HOM05D007267 ORTHO05D009053 9.0e-27 124.0 94 62.8
FAN25G2009 Fragaria x ananassa HOM05D007267 ORTHO05D009053 9.0e-27 124.0 98 60.2
Prupe.6G149700 Prunus persica HOM05D007267 ORTHO05D009053 9.0e-27 124.0 99 62.6
Eucgr.J00600 Eucalyptus grandis HOM05D007267 ORTHO05D009053 2.0e-26 122.9 122 56.6
FvH4_3g26950 Fragaria vesca HOM05D007267 ORTHO05D009053 4.5e-26 121.7 96 60.4
RcHm_v2.0_Chr5g0049391 Rosa chinensis HOM05D007267 ORTHO05D009053 7.6e-26 120.9 98 60.2
Aa31LG1G13830 Aethionema arabicum HOM05D007267 ORTHO05D009053 9.9e-26 120.6 94 63.8
AT5G20935 Arabidopsis thaliana HOM05D007267 ORTHO05D009053 9.9e-26 120.6 95 63.2
PGR119G2323 Punica granatum HOM05D007267 ORTHO05D009053 1.3e-25 120.2 104 56.7
AL6G32500 Arabidopsis lyrata HOM05D007267 ORTHO05D009053 2.2e-25 119.4 95 62.1
vmacro14300 Vaccinium macrocarpon HOM05D007267 ORTHO05D009053 2.2e-25 119.4 86 62.8
COL.COLO4_25353 Corchorus olitorius HOM05D007267 ORTHO05D009053 8.4e-25 117.5 74 70.3
Gorai.007G016000 Gossypium raimondii HOM05D007267 ORTHO05D009053 1.1e-24 117.1 81 69.1
BolC3t13659H Brassica oleracea HOM05D007267 ORTHO05D009053 1.4e-24 116.7 90 64.4
Cpa.g.sc103.55 Carica papaya HOM05D007267 ORTHO05D009053 1.4e-24 116.7 72 70.8
Thhalv10015046m.g Eutrema salsugineum HOM05D007267 ORTHO05D009053 1.4e-24 116.7 92 63.0
MD03G1161500 Malus domestica HOM05D007267 ORTHO05D009053 1.4e-24 116.7 86 66.3
Ciclev10029598m.g Citrus clementina HOM05D007267 ORTHO05D009053 1.9e-24 116.3 74 68.9
Medtr3g079820 Medicago truncatula HOM05D007267 ORTHO05D009053 1.9e-24 116.3 74 71.6
TPR.G15594 Trifolium pratense HOM05D007267 ORTHO05D009053 1.9e-24 116.3 74 71.6
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 2.4e-24 115.9 74 70.3
ClCG02G024060 Citrullus lanatus HOM05D007267 ORTHO05D009053 2.4e-24 115.9 127 49.6
Lalb_Chr17g0347461 Lupinus albus HOM05D007267 ORTHO05D009053 2.4e-24 115.9 70 74.3
Duzib170G0076 Durio zibethinus HOM05D007267 ORTHO05D009053 3.2e-24 115.5 92 63.0
Gohir.D11G012400 Gossypium hirsutum HOM05D007267 ORTHO05D009053 3.2e-24 115.5 79 69.6
Lj6g0001809 Lotus japonicus HOM05D007267 ORTHO05D009053 3.2e-24 115.5 71 74.6
Phvul.006G014400 Phaseolus vulgaris HOM05D007267 ORTHO05D009053 3.2e-24 115.5 97 59.8
MSTRG.12404 Avicennia marina HOM05D007267 ORTHO05D009053 4.2e-24 115.2 134 48.5
Carub.0006s1925 Capsella rubella HOM05D007267 ORTHO05D009053 4.2e-24 115.2 92 63.0
CARHR191910 Cardamine hirsuta HOM05D007267 ORTHO05D009053 4.2e-24 115.2 90 64.4
Psat5g107600 Pisum sativum HOM05D007267 ORTHO05D009053 4.2e-24 115.2 74 68.9
BcaB05g22800 Brassica carinata HOM05D007267 ORTHO05D009053 5.5e-24 114.8 90 63.3
BcaNung05756 Brassica carinata HOM05D007267 ORTHO05D009053 5.5e-24 114.8 90 63.3
C03p11890 Brassica napus HOM05D007267 ORTHO05D009053 5.5e-24 114.8 90 63.3
A03p10350 Brassica napus HOM05D007267 ORTHO05D009053 7.1e-24 114.4 90 63.3
QL03p058144 Quercus lobata HOM05D007267 ORTHO05D009053 7.1e-24 114.4 86 62.8
C02p10530 Brassica napus HOM05D007267 ORTHO05D009053 9.3e-24 114.0 93 61.3
BraA02t05605Z Brassica rapa HOM05D007267 ORTHO05D009053 9.3e-24 114.0 93 61.3
BolC2t07084H Brassica oleracea HOM05D007267 ORTHO05D009053 1.2e-23 113.6 92 62.0
BraA03t10347Z Brassica rapa HOM05D007267 ORTHO05D009053 1.2e-23 113.6 90 63.3
Lsat_1_v5_gn_4_124761 Lactuca sativa HOM05D007267 ORTHO05D009053 1.2e-23 113.6 74 74.3
Thecc.09G267200 Theobroma cacao HOM05D007267 ORTHO05D009053 1.2e-23 113.6 73 71.2
arahy.Tifrunner.gnm1.ann1.NLVX9W Arachis hypogaea HOM05D007267 ORTHO05D009053 1.6e-23 113.2 70 72.9
arahy.Tifrunner.gnm1.ann1.YII7CZ Arachis hypogaea HOM05D007267 ORTHO05D009053 1.6e-23 113.2 70 72.9
BcaC03g13815 Brassica carinata HOM05D007267 ORTHO05D009053 1.6e-23 113.2 90 62.2
Cfa019700 Carpinus fangiana HOM05D007267 ORTHO05D009053 1.6e-23 113.2 73 68.5
Cfa019701 Carpinus fangiana HOM05D007267 ORTHO05D009053 1.6e-23 113.2 73 68.5
Cc05_g03630 Coffea canephora HOM05D007267 ORTHO05D009053 1.6e-23 113.2 71 70.4
Nn2g14465 Nelumbo nucifera HOM05D007267 ORTHO05D009053 1.6e-23 113.2 109 55.0
Dinv32141 Davidia involucrata HOM05D007267 ORTHO05D009053 2.1e-23 112.8 97 55.7
HanXRQChr09g0268081 Helianthus annuus HOM05D007267 ORTHO05D009053 2.1e-23 112.8 74 74.3
Hma1.2p1_0218F.1_g092330 Hydrangea macrophylla HOM05D007267 ORTHO05D009053 2.1e-23 112.8 71 71.8
Sabra09G0121800 Salix brachista HOM05D004779 ORTHO05D005737 2.1e-23 112.8 72 68.1
THA.LOC104799596 Tarenaya hassleriana HOM05D007267 ORTHO05D009053 2.1e-23 112.8 90 64.4
Haze_02482 Corylus avellana HOM05D007267 ORTHO05D009053 2.7e-23 112.5 73 68.5
Migut.N02428 Erythranthe guttata HOM05D007267 ORTHO05D009053 2.7e-23 112.5 87 60.9
Glyma.02G102300 Glycine max HOM05D007267 ORTHO05D009053 2.7e-23 112.5 71 70.4
Nitab4.5_0001504g0080 Nicotiana tabacum HOM05D007267 ORTHO05D009053 2.7e-23 112.5 73 68.5
Actinidia22464 Actinidia chinensis HOM05D007267 ORTHO05D009053 3.5e-23 112.1 76 64.5
Glyma.07G213600 Glycine max HOM05D007267 ORTHO05D009053 3.5e-23 112.1 78 64.1
Peaxi162Scf00345g00617 Petunia axillaris HOM05D007267 ORTHO05D009053 3.5e-23 112.1 79 65.8
Atru.chr3.3040 Acer truncatum HOM05D007267 ORTHO05D009053 4.6e-23 111.7 98 54.1
FAN11G1992 Fragaria x ananassa HOM05D007267 ORTHO05D009053 7.9e-23 110.9 96 57.3
unitig_8.g2981 Utricularia gibba HOM05D007267 ORTHO05D009053 1.0e-22 110.5 77 68.8
Potri.009G155300 Populus trichocarpa HOM05D007267 ORTHO05D009053 1.3e-22 110.2 101 53.5
TWI31G1096 Tripterygium wilfordii HOM05D007267 ORTHO05D009053 1.3e-22 110.2 73 65.8
CSS0044664 Camellia sinensis var. sinensis HOM05D004779 ORTHO05D005737 1.8e-22 109.8 73 65.8
CsaV3_4G023270 Cucumis sativus L. HOM05D007267 ORTHO05D009053 1.8e-22 109.8 102 54.9
Solyc01g009245.1 Solanum lycopersicum HOM05D007267 ORTHO05D009053 1.8e-22 109.8 77 63.6
TAR623G0997 Trochodendron aralioides HOM05D007267 ORTHO05D009053 1.8e-22 109.8 71 70.4
ATR0697G260 Amborella trichopoda HOM05D007267 ORTHO05D009053 2.3e-22 109.4 76 65.8
CAN.G226.32 Capsicum annuum HOM05D007267 ORTHO05D009053 5.1e-22 108.2 74 64.9
Sopen01g004730 Solanum pennellii HOM05D007267 ORTHO05D009053 5.1e-22 108.2 77 62.3
VMungo0540G2312 Vigna mungo HOM05D007267 ORTHO05D009053 5.1e-22 108.2 117 46.2
CANSAT54G0135 Cannabis sativa HOM05D007267 ORTHO05D009053 6.7e-22 107.8 72 63.9
Aqoxy2G00618 Aquilegia oxysepala HOM05D007267 ORTHO05D009053 8.7e-22 107.5 76 65.8
PGSC0003DMG400013132 Solanum tuberosum HOM05D007267 ORTHO05D009053 8.7e-22 107.5 93 54.8
GSVIVG01037512001 Vitis vinifera HOM05D007267 ORTHO05D009053 1.1e-21 107.1 73 64.4
PSO384G0574 Papaver somniferum HOM05D007267 ORTHO05D009053 1.5e-21 106.7 96 54.2
SEGI_22571 Sequoiadendron giganteum HOM05D007267 ORTHO05D009053 1.5e-21 106.7 101 52.5
EL10Ac7g16252 Beta vulgaris HOM05D007267 ORTHO05D009053 1.9e-21 106.3 73 65.8
MELO3C014688.2 Cucumis melo HOM05D007267 ORTHO05D009053 1.9e-21 106.3 109 52.3
Manes.11G104200 Manihot esculenta HOM05D007267 ORTHO05D009053 1.9e-21 106.3 70 65.7
PSO339G2642 Papaver somniferum HOM05D007267 ORTHO05D009053 1.9e-21 106.3 96 54.2
Duzib168G2107 Durio zibethinus HOM05D004779 ORTHO05D005737 4.3e-21 105.1 112 53.6
SalBow3G2700 Salvia bowleyana HOM05D007267 ORTHO05D009053 5.6e-21 104.8 105 50.5
Gohir.A11G015400 Gossypium hirsutum HOM05D007267 ORTHO05D009053 7.4e-21 104.4 69 71.0
Rhsim01G0198000 Rhododendron simsii HOM05D007267 ORTHO05D009053 7.4e-21 104.4 119 46.2
Ah.15g099120 Amaranthus hybridus HOM05D007267 ORTHO05D009053 9.6e-21 104.0 100 53.0
Sed0001981 Sechium edule HOM05D007267 ORTHO05D009053 1.3e-20 103.6 121 47.9
Duzib168G1484 Durio zibethinus HOM05D007267 ORTHO05D009053 6.2e-20 101.3 99 55.6
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 4.0e-19 98.6 69 65.2
Mapoly0146s0012 Marchantia polymorpha HOM05D007267 ORTHO05D009053 1.5e-18 96.7 73 60.3
AagrBONN_evm.TU.Sc2ySwM_117.833 Anthoceros agrestis HOM05D007267 ORTHO05D009053 2.6e-18 95.9 89 52.8
arahy.Tifrunner.gnm1.ann1.SB69IV Arachis hypogaea HOM05D007267 ORTHO05D009053 1.0e-17 94.0 109 46.8
Sed0001742 Sechium edule HOM05D007267 ORTHO05D009053 1.0e-17 94.0 66 71.2
Pp3c3_19300 Physcomitrium patens HOM05D007267 ORTHO05D009053 2.9e-17 92.4 118 42.4
SMO367G0148 Selaginella moellendorffii HOM05D007267 ORTHO05D009053 4.2e-16 88.6 63 57.1
Aqoxy51s004 Aquilegia oxysepala HOM05D007267 ORTHO05D009053 5.5e-16 88.2 55 70.9
ECA232G2859 Erigeron canadensis HOM05D000436 ORTHO05D008174 7.1e-16 87.8 56 75.0
Os07g0164200 Oryza sativa ssp. japonica HOM05D007267 ORTHO05D009053 1.8e-14 83.2 72 66.7
Medtr3g079783 Medicago truncatula HOM05D000005 ORTHO05D000294 1.5e-13 80.1 74 51.4
CBR_g51378 Chara braunii HOM05D007267 ORTHO05D009053 2.8e-12 75.9 70 42.9
arahy.Tifrunner.gnm1.ann1.69KWVE Arachis hypogaea HOM05D007267 ORTHO05D009053 4.2e-08 62.0 40 75.0
MBI11_g25049_MAGBIO Magnolia biondii HOM05D007267 ORTHO05D009053 5.5e-08 61.6 37 70.3
arahy.Tifrunner.gnm1.ann1.BBFR3C Arachis hypogaea HOM05D003566 ORTHO05D009053 1.3e-06 57.0 39 71.8
Nitab4.5_0000157g0140 Nicotiana tabacum HOM05D007267 ORTHO05D009053 3.9e-06 55.5 36 58.3


User provided reference genes

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