Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 7.2e-62 240.4 117 100.0
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 1.9e-54 215.7 117 91.5
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 3.3e-51 204.9 117 85.5
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.2e-43 179.9 110 75.5
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 1.4e-41 172.9 113 70.8
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 1.4e-41 172.9 110 71.8
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 2.4e-41 172.2 111 73.0
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 3.1e-41 171.8 109 74.3
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 4.1e-41 171.4 110 71.8
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 4.1e-41 171.4 110 71.8
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 4.1e-41 171.4 110 71.8
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 5.4e-41 171.0 110 71.8
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 5.4e-41 171.0 112 70.5
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 7.0e-41 170.6 112 68.8
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 7.0e-41 170.6 107 74.8
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 7.0e-41 170.6 113 69.9
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 7.0e-41 170.6 111 72.1
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 9.1e-41 170.2 110 70.9
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 9.1e-41 170.2 110 70.9
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 9.1e-41 170.2 110 70.9
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 9.1e-41 170.2 110 70.9
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 9.1e-41 170.2 110 70.9
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 9.1e-41 170.2 110 70.9
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 9.1e-41 170.2 110 70.9
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 9.1e-41 170.2 110 70.9
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 9.1e-41 170.2 110 70.9
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 9.1e-41 170.2 110 70.9
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 9.1e-41 170.2 110 70.9
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 9.1e-41 170.2 110 70.9
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 9.1e-41 170.2 111 70.3
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 9.1e-41 170.2 114 69.3
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 1.2e-40 169.9 111 71.2
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 1.6e-40 169.5 110 70.0
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 1.6e-40 169.5 110 70.0
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 1.6e-40 169.5 111 69.4
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 2.0e-40 169.1 109 71.6
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 2.0e-40 169.1 110 69.1
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 2.0e-40 169.1 111 71.2
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 2.0e-40 169.1 111 72.1
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 2.7e-40 168.7 111 68.5
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 2.7e-40 168.7 110 70.0
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 2.7e-40 168.7 110 71.8
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 2.7e-40 168.7 110 70.9
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 3.5e-40 168.3 110 69.1
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 4.5e-40 167.9 114 69.3
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 5.9e-40 167.5 110 70.9
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 5.9e-40 167.5 113 69.9
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 7.7e-40 167.2 109 72.5
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 7.7e-40 167.2 111 67.6
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 7.7e-40 167.2 111 70.3
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 7.7e-40 167.2 110 70.9
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 7.7e-40 167.2 114 69.3
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 7.7e-40 167.2 111 71.2
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 1.0e-39 166.8 110 70.0
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 1.0e-39 166.8 110 70.9
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 1.0e-39 166.8 110 70.0
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.0e-39 166.8 110 69.1
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 1.0e-39 166.8 113 69.9
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 1.3e-39 166.4 110 69.1
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 1.3e-39 166.4 111 68.5
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 1.3e-39 166.4 110 70.0
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 1.7e-39 166.0 110 69.1
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 2.3e-39 165.6 110 68.2
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 2.3e-39 165.6 110 70.0
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 2.9e-39 165.2 111 67.6
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 3.8e-39 164.9 110 71.8
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 3.8e-39 164.9 110 70.0
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 3.8e-39 164.9 109 72.5
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 3.8e-39 164.9 109 72.5
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 3.8e-39 164.9 107 72.0
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 3.8e-39 164.9 110 70.0
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 5.0e-39 164.5 113 69.9
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 5.0e-39 164.5 110 70.0
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 5.0e-39 164.5 110 69.1
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 6.6e-39 164.1 117 69.2
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 6.6e-39 164.1 110 70.9
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 8.6e-39 163.7 110 70.9
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 1.1e-38 163.3 107 71.0
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 1.1e-38 163.3 107 71.0
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.1e-38 163.3 115 69.6
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.1e-38 163.3 108 72.2
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 1.1e-38 163.3 110 70.9
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 1.5e-38 162.9 102 72.5
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.5e-38 162.9 107 70.1
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 1.5e-38 162.9 110 68.2
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 1.5e-38 162.9 111 68.5
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.9e-38 162.5 102 73.5
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 1.9e-38 162.5 106 72.6
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.9e-38 162.5 110 69.1
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.9e-38 162.5 110 69.1
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.9e-38 162.5 108 72.2
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 1.9e-38 162.5 114 65.8
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 2.5e-38 162.2 111 69.4
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 3.3e-38 161.8 106 73.6
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 3.3e-38 161.8 110 67.3
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 4.2e-38 161.4 109 68.8
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 4.2e-38 161.4 102 72.5
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 4.2e-38 161.4 110 68.2
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 4.2e-38 161.4 110 68.2
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 4.2e-38 161.4 110 68.2
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 4.2e-38 161.4 110 68.2
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 4.2e-38 161.4 111 67.6
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 4.2e-38 161.4 110 68.2
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 4.2e-38 161.4 107 71.0
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 4.2e-38 161.4 109 70.6
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 4.2e-38 161.4 109 70.6
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 5.5e-38 161.0 115 68.7
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 5.5e-38 161.0 110 67.3
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 5.5e-38 161.0 106 72.6
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 5.5e-38 161.0 110 67.3
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 5.5e-38 161.0 114 65.8
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 9.5e-38 160.2 110 68.2
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 9.5e-38 160.2 108 68.5
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.2e-37 159.8 107 69.2
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 1.6e-37 159.5 107 67.3
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.6e-37 159.5 107 67.3
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 1.6e-37 159.5 107 67.3
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 2.1e-37 159.1 109 67.0
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 2.8e-37 158.7 111 65.8
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 2.8e-37 158.7 110 68.2
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 2.8e-37 158.7 107 68.2
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 2.8e-37 158.7 109 69.7
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 3.6e-37 158.3 107 65.4
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 3.6e-37 158.3 110 68.2
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 4.7e-37 157.9 108 66.7
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 6.1e-37 157.5 111 65.8
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 1.0e-36 156.8 107 65.4
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 1.0e-36 156.8 111 64.9
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.4e-36 156.4 107 66.4
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 1.4e-36 156.4 102 70.6
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 1.4e-36 156.4 107 67.3
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 2.3e-36 155.6 109 66.1
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 3.0e-36 155.2 109 67.0
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 4.0e-36 154.8 104 67.3
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 4.0e-36 154.8 114 64.9
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 4.0e-36 154.8 107 68.2
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 5.2e-36 154.5 107 67.3
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 6.8e-36 154.1 104 68.3
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 1.2e-35 153.3 103 67.0
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 1.2e-35 153.3 112 63.4
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 1.5e-35 152.9 111 64.0
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 3.4e-35 151.8 94 74.5
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 5.7e-35 151.0 111 64.9
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 1.3e-34 149.8 96 70.8
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 2.2e-34 149.1 169 47.3
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 4.9e-34 147.9 109 62.4
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 3.8e-31 138.3 111 59.5
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 1.5e-30 136.3 108 61.1
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 3.6e-29 131.7 113 57.5
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 6.1e-29 131.0 105 58.1
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 2.0e-27 125.9 101 55.4
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 5.8e-27 124.4 92 64.1
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 2.2e-26 122.5 84 69.0
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 1.4e-25 119.8 81 65.4
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 2.4e-25 119.0 75 70.7
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 4.1e-25 118.2 85 64.7
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 1.3e-23 113.2 106 49.1
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 6.6e-23 110.9 106 52.8
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 1.2e-19 100.1 78 62.8
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 1.2e-19 100.1 62 72.6
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 1.2e-19 100.1 98 49.0
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 2.6e-19 99.0 63 71.4
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 7.5e-19 97.4 77 62.3
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 1.1e-17 93.6 62 71.0
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 1.9e-17 92.8 56 75.0
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 3.2e-17 92.0 59 72.9
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 5.4e-17 91.3 59 72.9
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 1.2e-16 90.1 62 69.4
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 2.7e-16 89.0 62 67.7
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 3.5e-16 88.6 96 43.8
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 3.5e-16 88.6 54 77.8
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 2.3e-15 85.9 46 82.6
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 5.1e-15 84.7 58 67.2
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.5e-14 83.2 48 79.2
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 2.5e-14 82.4 45 73.3
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 1.1e-12 77.0 51 72.5
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 4.0e-12 75.1 45 73.3
Cre07.g333900 Chlamydomonas reinhardtii HOM05D004069 ORTHO05D004699 1.1e-09 67.0 100 37.0


User provided reference genes

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