Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 8.4e-115 417.2 228 100.0
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 1.8e-85 319.7 228 80.3
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 3.4e-68 262.3 183 79.2
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 2.2e-67 259.6 219 63.9
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 6.5e-67 258.1 221 65.2
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.9e-66 256.5 182 71.4
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 1.9e-66 256.5 218 70.2
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 3.2e-66 255.8 199 68.8
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 9.4e-66 254.2 182 70.9
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 1.2e-65 253.8 228 67.5
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 2.1e-65 253.1 183 76.5
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 2.1e-65 253.1 214 69.2
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 2.7e-65 252.7 182 72.0
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 4.7e-65 251.9 207 67.1
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 1.0e-64 250.8 204 66.7
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 1.8e-64 250.0 187 76.5
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 1.8e-64 250.0 187 76.5
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 1.8e-64 250.0 182 79.1
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 2.3e-64 249.6 203 70.9
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 3.0e-64 249.2 182 73.6
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 3.0e-64 249.2 202 70.3
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 3.0e-64 249.2 187 76.5
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 3.9e-64 248.8 218 62.8
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 3.9e-64 248.8 183 77.6
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 5.1e-64 248.4 207 66.7
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 5.1e-64 248.4 201 70.6
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 6.7e-64 248.1 180 77.2
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 8.8e-64 247.7 183 77.0
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 1.1e-63 247.3 219 67.1
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 1.5e-63 246.9 201 72.1
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 2.0e-63 246.5 183 76.5
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 2.0e-63 246.5 207 66.2
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 2.0e-63 246.5 182 74.7
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 3.3e-63 245.7 226 64.2
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 4.4e-63 245.4 193 72.5
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 1.3e-62 243.8 225 64.4
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 1.3e-62 243.8 225 64.4
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 1.3e-62 243.8 198 70.2
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 1.3e-62 243.8 188 73.9
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 2.8e-62 242.7 183 75.4
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.8e-62 242.7 182 74.7
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 3.7e-62 242.3 225 64.0
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 4.8e-62 241.9 182 74.7
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 6.3e-62 241.5 189 67.7
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 6.3e-62 241.5 213 63.8
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 1.1e-61 240.7 183 75.4
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 1.1e-61 240.7 183 75.4
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 1.4e-61 240.4 225 64.0
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 1.4e-61 240.4 182 75.8
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 1.8e-61 240.0 226 62.4
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 1.8e-61 240.0 187 72.2
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 2.4e-61 239.6 183 74.3
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 2.4e-61 239.6 186 72.6
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 2.4e-61 239.6 180 73.9
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 3.1e-61 239.2 226 63.3
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 4.1e-61 238.8 192 70.8
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 5.3e-61 238.4 214 65.4
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 7.0e-61 238.0 225 63.6
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 7.0e-61 238.0 207 63.8
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 9.1e-61 237.7 225 63.6
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 9.1e-61 237.7 218 62.4
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 1.5e-60 236.9 200 67.5
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 1.5e-60 236.9 182 72.5
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 1.5e-60 236.9 183 68.9
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 2.0e-60 236.5 183 71.6
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 2.6e-60 236.1 226 63.7
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 2.6e-60 236.1 216 65.3
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 2.6e-60 236.1 200 67.5
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 3.5e-60 235.7 221 64.3
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 1.3e-59 233.8 182 72.5
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 1.3e-59 233.8 172 75.6
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 1.7e-59 233.4 182 74.7
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 1.7e-59 233.4 193 70.5
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 2.9e-59 232.6 181 68.0
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 3.8e-59 232.3 181 73.5
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 5.0e-59 231.9 188 66.0
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 8.5e-59 231.1 226 62.4
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 8.5e-59 231.1 238 57.6
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 1.1e-58 230.7 213 66.7
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 1.9e-58 229.9 183 66.7
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 1.9e-58 229.9 215 64.2
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 2.5e-58 229.6 182 67.0
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 4.2e-58 228.8 184 66.3
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 5.5e-58 228.4 182 67.0
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 7.2e-58 228.0 239 58.2
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 7.2e-58 228.0 182 72.0
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 1.2e-57 227.3 184 67.4
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 4.7e-57 225.3 230 60.4
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 4.7e-57 225.3 204 67.2
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 4.7e-57 225.3 204 67.2
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 3.0e-56 222.6 228 61.4
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 3.0e-56 222.6 199 68.3
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 7.4e-55 218.0 199 61.3
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 1.7e-54 216.9 198 61.6
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 3.7e-54 215.7 198 62.1
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 6.5e-51 204.9 172 63.4
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 1.5e-50 203.8 219 53.4
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 1.0e-48 197.6 188 66.0
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 1.4e-48 197.2 181 61.3
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 4.0e-48 195.7 168 63.7
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 5.2e-48 195.3 199 62.3
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 5.7e-47 191.8 146 67.8
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 7.5e-47 191.4 138 71.0
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 1.7e-46 190.3 176 61.4
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 1.8e-45 186.8 210 52.4
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 1.6e-44 183.7 188 56.4
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 3.2e-42 176.0 187 53.5
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 3.6e-41 172.6 125 79.2
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 5.7e-39 165.2 182 58.2
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 9.8e-39 164.5 174 51.1
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 8.3e-38 161.4 207 53.1
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 1.8e-32 143.7 262 43.5
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 1.8e-32 143.7 186 47.3
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.0e-28 130.2 94 69.1
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 7.8e-28 128.3 94 68.1
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 6.6e-27 125.2 94 67.0
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 1.1e-26 124.4 163 45.4
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.5e-26 124.0 94 64.9
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 6.1e-25 118.6 101 63.4
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 1.4e-24 117.5 101 57.4
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 2.0e-23 113.6 95 74.7
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 3.4e-23 112.8 184 40.8
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 4.4e-23 112.5 79 64.6
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 1.7e-22 110.5 159 44.7
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 1.7e-22 110.5 153 45.8
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 2.2e-22 110.2 71 71.8
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 2.0e-20 103.6 203 36.5
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 1.7e-19 100.5 205 36.1
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 3.0e-19 99.8 205 35.6
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 1.1e-18 97.8 192 35.4
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 4.3e-18 95.9 174 39.1
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 1.6e-17 94.0 82 62.2
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.3e-14 84.3 182 36.3
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 1.1e-13 81.3 134 35.8
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 1.1e-10 71.2 151 35.8
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 7.3e-10 68.6 122 38.5
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 1.7e-06 57.4 51 56.9
TPR.G941 Trifolium pratense HOM05D005346 ORTHO05D007051 8.4e-06 55.1 53 73.6


User provided reference genes

Program Settings