Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 7.8e-64 247.3 156 100.0
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 1.8e-52 209.5 158 89.9
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 1.4e-41 173.3 157 80.9
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 5.1e-39 164.9 157 77.7
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 1.1e-38 163.7 127 77.2
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 1.1e-38 163.7 127 75.6
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 4.8e-37 158.3 127 74.8
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 4.8e-37 158.3 127 74.8
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 4.8e-37 158.3 127 74.8
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 8.2e-37 157.5 126 73.8
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 8.2e-37 157.5 126 73.8
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 9.0e-36 154.1 126 73.8
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 1.5e-35 153.3 157 77.1
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 5.5e-33 144.8 157 75.2
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 1.2e-32 143.7 98 79.6
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 6.1e-32 141.4 114 71.1
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 1.0e-31 140.6 98 78.6
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 1.0e-31 140.6 98 78.6
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 7.4e-22 107.8 125 53.6
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 4.8e-21 105.1 62 80.6
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 5.3e-20 101.7 62 75.8
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 1.2e-19 100.5 60 78.3
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 1.2e-19 100.5 118 59.3
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 4.5e-19 98.6 127 50.4
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 5.9e-19 98.2 130 53.8
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 5.9e-19 98.2 126 50.8
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 7.7e-19 97.8 56 83.9
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 1.7e-18 96.7 66 78.8
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 2.9e-18 95.9 126 48.4
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 1.1e-17 94.0 52 86.5
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 1.4e-17 93.6 126 46.8
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 1.4e-17 93.6 54 81.5
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 4.2e-17 92.0 125 49.6
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 4.2e-17 92.0 50 86.0
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 5.5e-17 91.7 130 48.5
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 7.2e-17 91.3 89 59.6
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 9.4e-17 90.9 125 48.8
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.2e-16 90.5 61 77.0
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.1e-16 89.7 125 48.8
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.1e-16 89.7 125 48.8
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 2.7e-16 89.4 69 69.6
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 8.0e-16 87.8 125 47.2
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 8.0e-16 87.8 53 77.4
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 8.0e-16 87.8 53 77.4
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 8.0e-16 87.8 126 46.8
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 3.0e-15 85.9 65 69.2
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 3.9e-15 85.5 126 45.2
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 5.2e-15 85.1 87 58.6
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 6.7e-15 84.7 100 55.0
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 1.1e-14 84.0 107 50.5
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 2.0e-14 83.2 48 83.3
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 2.0e-14 83.2 62 69.4
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.3e-14 82.4 43 90.7
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 4.4e-14 82.0 59 78.0
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 4.4e-14 82.0 54 74.1
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 5.7e-14 81.6 92 57.6
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 5.7e-14 81.6 84 58.3
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 9.7e-14 80.9 43 88.4
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 9.7e-14 80.9 53 77.4
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 9.7e-14 80.9 53 77.4
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 9.7e-14 80.9 134 47.0
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 1.7e-13 80.1 92 54.3
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 2.2e-13 79.7 137 46.0
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 2.8e-13 79.3 69 58.0
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 2.8e-13 79.3 50 80.0
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 6.3e-13 78.2 61 70.5
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 6.3e-13 78.2 61 70.5
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 6.3e-13 78.2 56 69.6
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 6.3e-13 78.2 85 55.3
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 6.3e-13 78.2 93 51.6
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 1.1e-12 77.4 54 74.1
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 1.1e-12 77.4 54 74.1
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 1.8e-12 76.6 127 44.1
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 1.8e-12 76.6 106 47.2
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 2.4e-12 76.3 130 43.1
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 3.1e-12 75.9 61 70.5
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 5.3e-12 75.1 126 44.4
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 5.3e-12 75.1 53 73.6
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 7.0e-12 74.7 77 58.4
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 9.1e-12 74.3 53 71.7
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 1.6e-11 73.6 40 82.5
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 1.6e-11 73.6 46 78.3
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 1.6e-11 73.6 50 72.0
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 2.0e-11 73.2 57 70.2
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 2.6e-11 72.8 42 78.6
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 2.6e-11 72.8 101 49.5
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 2.6e-11 72.8 65 61.5
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 2.6e-11 72.8 50 74.0
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 3.5e-11 72.4 47 76.6
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 3.5e-11 72.4 39 84.6
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 4.5e-11 72.0 73 61.6
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 4.5e-11 72.0 54 68.5
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 4.5e-11 72.0 51 74.5
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 5.9e-11 71.6 103 48.5
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 1.0e-10 70.9 113 46.0
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 1.3e-10 70.5 62 64.5
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.7e-10 70.1 70 60.0
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 1.7e-10 70.1 92 48.9
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 2.2e-10 69.7 60 66.7
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 2.2e-10 69.7 58 67.2
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 2.9e-10 69.3 37 86.5
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 3.8e-10 68.9 110 45.5
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 3.8e-10 68.9 50 70.0
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 6.5e-10 68.2 37 83.8
Sabra18G0067400 Salix brachista HOM05D005853 ORTHO05D007308 8.5e-10 67.8 31 90.3
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 8.5e-10 67.8 38 81.6
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 1.5e-09 67.0 130 40.0
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 1.5e-09 67.0 56 64.3
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 1.9e-09 66.6 115 43.5
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 1.9e-09 66.6 35 88.6
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 2.5e-09 66.2 87 48.3
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 2.5e-09 66.2 59 66.1
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 2.5e-09 66.2 59 62.7
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 2.5e-09 66.2 37 81.1
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 3.2e-09 65.9 82 56.1
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 3.2e-09 65.9 82 56.1
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 3.2e-09 65.9 58 63.8
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 4.2e-09 65.5 43 76.7
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 5.5e-09 65.1 99 44.4
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 1.2e-08 63.9 36 77.8
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 1.6e-08 63.5 113 45.1
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 2.7e-08 62.8 143 39.2
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 2.7e-08 62.8 69 55.1
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 6.1e-08 61.6 35 77.1
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 8.0e-08 61.2 91 49.5
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 1.8e-07 60.1 68 50.0
Oeu024066.2 Olea europaea HOM05D005853 ORTHO05D007308 1.8e-07 60.1 171 33.9
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 3.3e-06 55.8 69 49.3


User provided reference genes

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