Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10022775m.g Eutrema salsugineum HOM05D004451 ORTHO05D005177 1.1e-176 623.2 333 100.0
Sp3g28570 Schrenkiella parvula HOM05D004451 ORTHO05D005177 2.4e-142 509.2 298 93.3
AT2G15290 Arabidopsis thaliana HOM05D004451 ORTHO05D005177 3.3e-136 488.8 297 89.6
BcaC06g36051 Brassica carinata HOM05D004451 ORTHO05D005177 5.6e-136 488.0 298 89.3
AL3G47010 Arabidopsis lyrata HOM05D004451 ORTHO05D005177 8.1e-135 484.2 297 89.2
BcaB03g16278 Brassica carinata HOM05D004451 ORTHO05D005177 3.1e-134 482.3 325 84.0
BcaB07g31794 Brassica carinata HOM05D004451 ORTHO05D005177 6.9e-134 481.1 298 87.9
A07p05320 Brassica napus HOM05D004451 ORTHO05D005177 6.9e-134 481.1 298 88.9
BraA07t28325Z Brassica rapa HOM05D004451 ORTHO05D005177 6.9e-134 481.1 298 88.9
BolC7t41261H Brassica oleracea HOM05D004451 ORTHO05D005177 5.8e-133 478.0 298 87.9
BcaB08g34587 Brassica carinata HOM05D004451 ORTHO05D005177 1.3e-132 476.9 296 87.8
C07p08470 Brassica napus HOM05D004451 ORTHO05D005177 1.3e-132 476.9 298 87.9
CARHR105660 Cardamine hirsuta HOM05D004451 ORTHO05D005177 8.4e-132 474.2 296 88.2
BolC9t54158H Brassica oleracea HOM05D004451 ORTHO05D005177 2.7e-130 469.2 298 85.9
C09p12690 Brassica napus HOM05D004451 ORTHO05D005177 6.7e-129 464.5 293 86.7
Carub.0003s2912 Capsella rubella HOM05D004451 ORTHO05D005177 1.1e-128 463.8 299 87.6
A09p10690 Brassica napus HOM05D004451 ORTHO05D005177 7.4e-128 461.1 299 84.9
Aa31LG8G13140 Aethionema arabicum HOM05D004451 ORTHO05D005177 3.4e-125 452.2 306 82.4
BraA09t36712Z Brassica rapa HOM05D004451 ORTHO05D005177 1.6e-114 416.8 363 69.1
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 2.5e-112 409.5 260 85.4
THA.LOC104819557 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 7.0e-102 374.8 304 72.0
THA.LOC104807244 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 4.1e-94 349.0 287 70.7
BcaC06g31580 Brassica carinata HOM05D004451 ORTHO05D005177 1.0e-92 344.4 193 95.9
Cpa.g.sc106.89 Carica papaya HOM05D004451 ORTHO05D005177 3.0e-89 332.8 299 68.6
Atru.chr5.2587 Acer truncatum HOM05D004451 ORTHO05D005177 5.2e-89 332.0 292 67.8
Nn1g04705 Nelumbo nucifera HOM05D004451 ORTHO05D005177 8.8e-89 331.3 300 66.0
COL.COLO4_32599 Corchorus olitorius HOM05D004451 ORTHO05D005177 1.7e-87 327.0 292 64.7
TAR628G0195 Trochodendron aralioides HOM05D004451 ORTHO05D005177 1.7e-87 327.0 298 64.1
Gohir.A13G043700 Gossypium hirsutum HOM05D004451 ORTHO05D005177 2.2e-87 326.6 292 64.7
VMungo0720G2723 Vigna mungo HOM05D004451 ORTHO05D005177 2.8e-87 326.2 290 65.2
arahy.Tifrunner.gnm1.ann1.BMM90D Arachis hypogaea HOM05D004451 ORTHO05D005177 1.1e-86 324.3 291 65.6
Gorai.013G047100 Gossypium raimondii HOM05D004451 ORTHO05D005177 1.1e-86 324.3 297 63.3
PGR142G3187 Punica granatum HOM05D004451 ORTHO05D005177 1.1e-86 324.3 301 63.1
Thecc.02G107400 Theobroma cacao HOM05D004451 ORTHO05D005177 1.4e-86 323.9 308 61.4
Gohir.D13G042200 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.8e-86 323.6 297 63.3
Oeu010397.1 Olea europaea HOM05D004451 ORTHO05D005177 3.1e-86 322.8 296 64.9
TAR381G0562 Trochodendron aralioides HOM05D004451 ORTHO05D005177 3.1e-86 322.8 303 62.7
SalBow6G6827 Salvia bowleyana HOM05D004451 ORTHO05D005177 4.1e-86 322.4 300 63.0
arahy.Tifrunner.gnm1.ann1.S5NBXN Arachis hypogaea HOM05D004451 ORTHO05D005177 5.3e-86 322.0 293 64.5
Gohir.A03G186500 Gossypium hirsutum HOM05D004451 ORTHO05D005177 7.0e-86 321.6 296 62.5
Manes.07G069100 Manihot esculenta HOM05D004451 ORTHO05D005177 9.1e-86 321.2 299 62.9
CANSAT25G0591 Cannabis sativa HOM05D004451 ORTHO05D005177 1.2e-85 320.9 297 64.6
CANSAT25G2876 Cannabis sativa HOM05D004451 ORTHO05D005177 1.6e-85 320.5 297 63.0
Haze_10166 Corylus avellana HOM05D004451 ORTHO05D005177 1.6e-85 320.5 295 63.7
Cfa004574 Carpinus fangiana HOM05D004451 ORTHO05D005177 2.0e-85 320.1 295 64.4
Gorai.005G235200 Gossypium raimondii HOM05D004451 ORTHO05D005177 2.0e-85 320.1 294 63.3
MD05G1088600 Malus domestica HOM05D004451 ORTHO05D005177 2.0e-85 320.1 299 63.5
Phvul.007G040300 Phaseolus vulgaris HOM05D004451 ORTHO05D005177 2.0e-85 320.1 300 64.0
SGA_v2.0_scaffold32G13039 Striga asiatica HOM05D004451 ORTHO05D005177 2.0e-85 320.1 300 63.7
Lalb_Chr02g0145321 Lupinus albus HOM05D004451 ORTHO05D005177 2.7e-85 319.7 291 64.9
Gohir.D02G207300 Gossypium hirsutum HOM05D004451 ORTHO05D005177 3.5e-85 319.3 311 58.5
Hma1.2p1_0796F.1_g219180 Hydrangea macrophylla HOM05D004451 ORTHO05D005177 4.5e-85 318.9 230 76.1
Potri.001G300500 Populus trichocarpa HOM05D004451 ORTHO05D005177 4.5e-85 318.9 295 62.0
Glyma.10G261800 Glycine max HOM05D004451 ORTHO05D005177 5.9e-85 318.5 292 63.4
Lj5g0008999 Lotus japonicus HOM05D004451 ORTHO05D005177 1.0e-84 317.8 286 63.6
Prupe.8G134600 Prunus persica HOM05D004451 ORTHO05D005177 1.0e-84 317.8 297 62.0
Manes.10G076300 Manihot esculenta HOM05D004451 ORTHO05D005177 1.3e-84 317.4 298 62.8
CiPaw.05G011200 Carya illinoinensis HOM05D004451 ORTHO05D005177 2.9e-84 316.2 296 63.5
Psat6g219200 Pisum sativum HOM05D004451 ORTHO05D005177 2.9e-84 316.2 289 63.7
MSTRG.20184 Avicennia marina HOM05D004451 ORTHO05D005177 3.8e-84 315.8 214 77.1
TWI79G0876 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 3.8e-84 315.8 265 66.0
Cc02_g19230 Coffea canephora HOM05D004451 ORTHO05D005177 5.0e-84 315.5 301 62.5
HanXRQChr16g0514851 Helianthus annuus HOM05D004451 ORTHO05D005177 5.0e-84 315.5 217 77.0
Oeu018597.1 Olea europaea HOM05D004451 ORTHO05D005177 6.5e-84 315.1 300 63.7
RcHm_v2.0_Chr6g0255371 Rosa chinensis HOM05D004451 ORTHO05D005177 8.5e-84 314.7 289 64.7
TWI31G0226 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 8.5e-84 314.7 231 73.2
CSS0019678 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 1.1e-83 314.3 310 61.3
Actinidia17478 Actinidia chinensis HOM05D004451 ORTHO05D005177 1.9e-83 313.5 301 60.8
Glyma.20G129100 Glycine max HOM05D004451 ORTHO05D005177 1.9e-83 313.5 300 63.0
Medtr1g107450 Medicago truncatula HOM05D004451 ORTHO05D005177 1.9e-83 313.5 271 66.8
CSS0044080 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 2.5e-83 313.2 302 61.9
Lj9C321G12 Lonicera japonica HOM05D004451 ORTHO05D005177 2.5e-83 313.2 205 79.5
GSVIVG01003161001 Vitis vinifera HOM05D004451 ORTHO05D005177 2.5e-83 313.2 304 61.2
CSS0017890 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 3.2e-83 312.8 299 62.2
ClCG02G006310 Citrullus lanatus HOM05D004451 ORTHO05D005177 3.2e-83 312.8 252 69.4
CsaV3_7G008120 Cucumis sativus L. HOM05D004451 ORTHO05D005177 3.2e-83 312.8 247 70.4
Migut.B00385 Erythranthe guttata HOM05D004451 ORTHO05D005177 4.2e-83 312.4 215 77.7
Rhsim05G0088400 Rhododendron simsii HOM05D004451 ORTHO05D005177 4.2e-83 312.4 305 60.7
ECA234G3549 Erigeron canadensis HOM05D004451 ORTHO05D005177 5.5e-83 312.0 296 62.5
QL11p033916 Quercus lobata HOM05D004451 ORTHO05D005177 7.2e-83 311.6 299 61.9
Duzib132G0413 Durio zibethinus HOM05D004451 ORTHO05D005177 9.4e-83 311.2 308 59.7
Potri.009G096300 Populus trichocarpa HOM05D004451 ORTHO05D005177 9.4e-83 311.2 298 62.4
Duzib248G1610 Durio zibethinus HOM05D004451 ORTHO05D005177 1.2e-82 310.8 293 62.5
Ciclev10029016m.g Citrus clementina HOM05D004451 ORTHO05D005177 1.6e-82 310.5 292 62.7
vmacro19448 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 1.6e-82 310.5 302 62.6
Actinidia00412 Actinidia chinensis HOM05D004451 ORTHO05D005177 2.1e-82 310.1 301 61.5
Lalb_Chr06g0165471 Lupinus albus HOM05D004451 ORTHO05D005177 2.1e-82 310.1 229 73.4
MELO3C018494.2 Cucumis melo HOM05D004451 ORTHO05D005177 4.7e-82 308.9 218 75.7
CiPaw.06G169600 Carya illinoinensis HOM05D004451 ORTHO05D005177 8.0e-82 308.1 299 61.9
Ca_11078_v3 Cicer arietinum L. HOM05D004451 ORTHO05D005177 8.0e-82 308.1 291 63.6
FAN27G3473 Fragaria x ananassa HOM05D004451 ORTHO05D005177 8.0e-82 308.1 290 64.5
FAN20G1574 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.8e-81 307.0 293 62.8
PSO210G2671 Papaver somniferum HOM05D004451 ORTHO05D005177 4.0e-81 305.8 293 60.1
Nitab4.5_0002815g0090 Nicotiana tabacum HOM05D004451 ORTHO05D005177 5.2e-81 305.4 306 62.4
Sed0001090 Sechium edule HOM05D004451 ORTHO05D005177 5.2e-81 305.4 304 60.2
FvH4_2g05240 Fragaria vesca HOM05D004451 ORTHO05D005177 8.8e-81 304.7 290 64.5
MD10G1096700 Malus domestica HOM05D004451 ORTHO05D005177 2.0e-80 303.5 293 60.8
FAN15G2242 Fragaria x ananassa HOM05D004451 ORTHO05D005177 2.6e-80 303.1 302 62.3
PSO170G0588 Papaver somniferum HOM05D004451 ORTHO05D005177 3.4e-80 302.8 293 60.1
Aqoxy5G01146 Aquilegia oxysepala HOM05D004451 ORTHO05D005177 4.4e-80 302.4 277 64.3
MSTRG.16716 Avicennia marina HOM05D004451 ORTHO05D005177 4.4e-80 302.4 297 61.3
DCAR_001641 Daucus carota HOM05D004451 ORTHO05D005177 4.4e-80 302.4 195 81.0
CDE04G0259 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 5.7e-80 302.0 198 79.3
AUR62039084 Chenopodium quinoa HOM05D004451 ORTHO05D005177 5.7e-80 302.0 286 63.6
Lsat_1_v5_gn_5_114881 Lactuca sativa HOM05D004451 ORTHO05D005177 7.5e-80 301.6 285 62.5
Nn5g30419 Nelumbo nucifera HOM05D004451 ORTHO05D005177 2.2e-79 300.1 295 62.4
Nitab4.5_0005392g0030 Nicotiana tabacum HOM05D004451 ORTHO05D005177 3.7e-79 299.3 304 61.2
Sed0013348 Sechium edule HOM05D004451 ORTHO05D005177 3.7e-79 299.3 299 59.2
Actinidia05493 Actinidia chinensis HOM05D004451 ORTHO05D005177 8.3e-79 298.1 217 71.9
FAN24G2858 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.1e-78 297.7 243 69.5
SGA_v2.0_scaffold225G43078 Striga asiatica HOM05D004451 ORTHO05D005177 1.8e-78 297.0 250 67.6
Hund06320 Selenicereus undatus HOM05D004451 ORTHO05D005177 3.1e-78 296.2 302 60.3
HanXRQChr10g0292341 Helianthus annuus HOM05D004451 ORTHO05D005177 4.1e-78 295.8 292 60.6
AUR62010302 Chenopodium quinoa HOM05D004451 ORTHO05D005177 5.4e-78 295.4 210 75.2
PGSC0003DMG400025865 Solanum tuberosum HOM05D004451 ORTHO05D005177 7.0e-78 295.0 292 59.2
Hund00148 Selenicereus undatus HOM05D004451 ORTHO05D005177 9.1e-78 294.7 286 60.8
Rhsim11G0160300 Rhododendron simsii HOM05D004451 ORTHO05D005177 4.5e-77 292.4 192 79.7
Solyc01g107640.3 Solanum lycopersicum HOM05D004451 ORTHO05D005177 1.3e-76 290.8 299 59.2
SEGI_03021 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 2.3e-76 290.0 256 63.3
Sabra09G0074000 Salix brachista HOM05D004451 ORTHO05D005177 6.6e-76 288.5 346 53.2
Sopen01g049830 Solanum pennellii HOM05D004451 ORTHO05D005177 6.6e-76 288.5 292 57.9
Ah.01g018220 Amaranthus hybridus HOM05D004451 ORTHO05D005177 1.5e-75 287.3 298 59.1
EL10Ac9g22281 Beta vulgaris HOM05D004451 ORTHO05D005177 4.2e-75 285.8 210 71.9
Sabra16G0188700 Salix brachista HOM05D004451 ORTHO05D005177 1.6e-74 283.9 359 50.4
Peaxi162Scf00016g02324 Petunia axillaris HOM05D004451 ORTHO05D005177 2.1e-74 283.5 298 59.4
Os02g0187600 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 8.0e-74 281.6 204 71.6
Eucgr.E02954 Eucalyptus grandis HOM05D004451 ORTHO05D005177 1.4e-73 280.8 269 61.7
HPP92_004770 Vanilla planifolia HOM05D004451 ORTHO05D005177 1.2e-72 277.7 292 55.8
Os06g0638100 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 6.3e-71 271.9 200 70.5
Mapoly0049s0087 Marchantia polymorpha HOM05D004451 ORTHO05D005177 2.4e-70 270.0 215 67.4
unitig_22.g5194 Utricularia gibba HOM05D004451 ORTHO05D005177 4.1e-70 269.2 297 53.9
Pp3c27_4260 Physcomitrium patens HOM05D004451 ORTHO05D005177 9.2e-70 268.1 193 72.0
Dinv15761 Davidia involucrata HOM05D004451 ORTHO05D005177 2.0e-69 266.9 278 59.4
Zm00001eb206410 Zea mays HOM05D004451 ORTHO05D005177 7.8e-69 265.0 181 75.7
Pp3c1_21740 Physcomitrium patens HOM05D004451 ORTHO05D005177 2.3e-68 263.5 204 68.6
Pp3c10_9500 Physcomitrium patens HOM05D004451 ORTHO05D005177 7.3e-67 258.5 203 66.0
Sc17g0003020 Simmondsia chinensis HOM05D004451 ORTHO05D005177 1.6e-66 257.3 279 57.7
AagrBONN_evm.TU.Sc2ySwM_344.1281 Anthoceros agrestis HOM05D004451 ORTHO05D005177 3.6e-66 256.1 208 63.5
vmacro19524 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 1.0e-65 254.6 371 46.9
Zm00001eb387350 Zea mays HOM05D004451 ORTHO05D005177 1.0e-65 254.6 292 54.5
ATR0691G207 Amborella trichopoda HOM05D004451 ORTHO05D005177 1.2e-64 251.1 182 73.6
ECA240G4367 Erigeron canadensis HOM05D004451 ORTHO05D005177 1.3e-63 247.7 282 52.5
DCAR_021989 Daucus carota HOM05D004451 ORTHO05D005177 2.9e-63 246.5 251 55.8
unitig_8.g3679 Utricularia gibba HOM05D004451 ORTHO05D005177 1.7e-60 237.3 255 54.1
SMO118G0560 Selaginella moellendorffii HOM05D004451 ORTHO05D005177 9.2e-54 214.9 181 62.4
CBR_g39267 Chara braunii HOM05D004451 ORTHO05D005177 4.6e-53 212.6 204 57.8
vmacro02006 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 2.4e-46 190.3 194 58.8
SHI05289 Sapria himalayana HOM05D004451 ORTHO05D005177 2.7e-45 186.8 190 54.2
CDE06G1648 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 5.6e-43 179.1 134 69.4
TAR381G0937 Trochodendron aralioides HOM05D004451 ORTHO05D005177 2.3e-36 157.1 107 78.5
Zm00001eb234680 Zea mays HOM05D004451 ORTHO05D005177 6.6e-36 155.6 218 45.4
SEGI_11302 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 3.1e-33 146.7 150 56.0
Cre10.g454734 Chlamydomonas reinhardtii HOM05D000133 ORTHO05D005177 2.6e-32 143.7 266 36.8
MCO10G127 Micromonas commoda HOM05D004451 ORTHO05D005177 2.2e-31 140.6 279 35.5
CAN.G1231.10 Capsicum annuum HOM05D004451 ORTHO05D005177 1.1e-30 138.3 89 77.5
PRCOL_00004645 Prasinoderma coloniale HOM05D004451 ORTHO05D005177 3.1e-25 120.2 185 41.6
HPP92_008279 Vanilla planifolia HOM05D004451 ORTHO05D005177 1.9e-22 110.9 166 48.8
CBR_g28861 Chara braunii HOM05D004451 ORTHO05D009492 7.9e-21 105.5 87 62.1
CAN.G3385.1 Capsicum annuum HOM05D004451 ORTHO05D005177 3.0e-20 103.6 78 74.4
HanXRQChr01g0018911 Helianthus annuus HOM05D004451 ORTHO05D005177 1.6e-18 97.8 63 77.8
HanXRQChr17g0567381 Helianthus annuus HOM05D004451 ORTHO05D005177 4.8e-18 96.3 63 76.2
Cre11.g467759 Chlamydomonas reinhardtii HOM05D027551 ORTHO05D005177 5.5e-14 82.8 169 36.1
HanXRQChr05g0151971 Helianthus annuus HOM05D002664 ORTHO05D002974 1.3e-10 71.6 57 64.9
VMungo0251G3374 Vigna mungo HOM05D004451 ORTHO05D005177 3.8e-07 60.1 99 41.4


User provided reference genes

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