Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10021119m.g Eutrema salsugineum HOM05D002996 ORTHO05D003536 8.2e-188 660.2 330 100.0
Thhalv10019951m.g Eutrema salsugineum HOM05D002996 ORTHO05D003536 1.6e-98 363.6 258 74.4
CARHR077410 Cardamine hirsuta HOM05D002996 ORTHO05D003536 5.0e-92 342.0 264 70.5
AL3G13060 Arabidopsis lyrata HOM05D002996 ORTHO05D003536 1.6e-90 337.0 320 60.0
Sp3g02390 Schrenkiella parvula HOM05D002996 ORTHO05D003536 1.3e-89 334.0 264 68.9
BcaC05g30278 Brassica carinata HOM05D002996 ORTHO05D003536 1.1e-88 330.9 264 68.9
A05p43840 Brassica napus HOM05D002996 ORTHO05D003536 1.1e-86 324.3 264 67.8
BraA05t23122Z Brassica rapa HOM05D002996 ORTHO05D003536 1.1e-86 324.3 264 67.8
BcaC05g30533 Brassica carinata HOM05D002996 ORTHO05D003536 1.2e-85 320.9 264 66.7
C05p63430 Brassica napus HOM05D002996 ORTHO05D003536 1.3e-84 317.4 264 65.9
BolC5t35007H Brassica oleracea HOM05D002996 ORTHO05D003536 1.3e-84 317.4 264 65.9
Aa31LG5G13900 Aethionema arabicum HOM05D002996 ORTHO05D003536 1.9e-83 313.5 320 56.6
BcaC09g47743 Brassica carinata HOM05D002996 ORTHO05D003536 2.7e-82 309.7 264 66.7
BNapus_Darmor_BZH_scaffold_162p00130 Brassica napus HOM05D002996 ORTHO05D003536 1.4e-81 307.4 264 66.3
BolC1t05834H Brassica oleracea HOM05D002996 ORTHO05D003536 1.4e-81 307.4 264 66.3
A06p26370 Brassica napus HOM05D002996 ORTHO05D003536 8.8e-81 304.7 264 65.9
BNapus_Darmor_BZH_scaffold_78p00120 Brassica napus HOM05D002996 ORTHO05D003536 8.8e-81 304.7 264 65.9
BraA01t04583Z Brassica rapa HOM05D002996 ORTHO05D003536 1.1e-78 297.7 265 66.0
THA.LOC104827237 Tarenaya hassleriana HOM05D002996 ORTHO05D003536 4.1e-70 269.2 273 57.9
Carub.0003s0254 Capsella rubella HOM05D002996 ORTHO05D003536 7.0e-70 268.5 314 53.2
AT3G03380 Arabidopsis thaliana HOM05D002996 ORTHO05D003536 2.9e-68 263.1 314 52.2
COL.COLO4_15722 Corchorus olitorius HOM05D002996 ORTHO05D003536 2.0e-56 223.8 262 50.4
Ciclev10010941m.g Citrus clementina HOM05D002996 ORTHO05D003536 2.6e-56 223.4 271 50.6
Gorai.004G064500 Gossypium raimondii HOM05D002996 ORTHO05D003536 2.6e-56 223.4 260 51.9
TPR.G27148 Trifolium pratense HOM05D002996 ORTHO05D003536 5.7e-56 222.2 271 49.8
Gohir.A08G052700 Gossypium hirsutum HOM05D002996 ORTHO05D003536 2.8e-55 219.9 259 50.2
Thecc.04G120500 Theobroma cacao HOM05D002996 ORTHO05D003536 3.7e-55 219.5 313 44.7
GSVIVG01030858001 Vitis vinifera HOM05D002996 ORTHO05D003536 1.8e-54 217.2 219 54.8
Duzib211G0161 Durio zibethinus HOM05D002996 ORTHO05D003536 4.1e-54 216.1 260 50.0
Gohir.D08G062300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 5.4e-54 215.7 238 52.1
Gorai.007G179800 Gossypium raimondii HOM05D002996 ORTHO05D003536 7.0e-54 215.3 265 48.7
Gohir.A11G162100 Gossypium hirsutum HOM05D002996 ORTHO05D003536 1.2e-53 214.5 238 52.5
Gohir.D11G168300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 1.2e-53 214.5 264 47.7
Hund16206 Selenicereus undatus HOM05D002996 ORTHO05D003536 2.0e-53 213.8 271 46.5
Atru.chr1.1814 Acer truncatum HOM05D002996 ORTHO05D003536 2.7e-53 213.4 270 49.6
Cpa.g.sc604.6 Carica papaya HOM05D002996 ORTHO05D003536 3.5e-53 213.0 271 48.0
CANSAT78G2389 Cannabis sativa HOM05D002996 ORTHO05D003536 4.5e-53 212.6 271 46.5
Prupe.3G159400 Prunus persica HOM05D002996 ORTHO05D003536 4.5e-53 212.6 277 46.9
Medtr3g067690 Medicago truncatula HOM05D002996 ORTHO05D003536 7.7e-53 211.8 270 47.0
FvH4_5g27890 Fragaria vesca HOM05D002996 ORTHO05D003536 1.0e-52 211.5 279 46.6
Psat5g122480 Pisum sativum HOM05D002996 ORTHO05D003536 1.0e-52 211.5 272 48.2
QL11p004079 Quercus lobata HOM05D002996 ORTHO05D003536 1.0e-52 211.5 271 48.0
CiPaw.03G068800 Carya illinoinensis HOM05D002996 ORTHO05D003536 1.3e-52 211.1 275 48.4
ECA232G3169 Erigeron canadensis HOM05D002996 ORTHO05D003536 1.3e-52 211.1 308 44.2
Rhsim08G0086100 Rhododendron simsii HOM05D002996 ORTHO05D003536 1.3e-52 211.1 276 46.0
arahy.Tifrunner.gnm1.ann1.GD0F1M Arachis hypogaea HOM05D002996 ORTHO05D003536 1.7e-52 210.7 273 47.6
Aqoxy3G00131_Aqoxy3G00132 Aquilegia oxysepala HOM05D002996 ORTHO05D003536 2.2e-52 210.3 270 46.7
PGR004G1736 Punica granatum HOM05D002996 ORTHO05D003536 2.2e-52 210.3 325 41.2
RcHm_v2.0_Chr7g0220101 Rosa chinensis HOM05D002996 ORTHO05D003536 2.2e-52 210.3 277 46.6
Phvul.001G231700 Phaseolus vulgaris HOM05D002996 ORTHO05D003536 2.9e-52 209.9 270 47.4
Sc10g0000820 Simmondsia chinensis HOM05D002996 ORTHO05D003536 2.9e-52 209.9 276 47.1
VMungo1383G2581 Vigna mungo HOM05D002996 ORTHO05D003536 2.9e-52 209.9 272 48.9
Lj2C435G10 Lonicera japonica HOM05D002996 ORTHO05D003536 3.8e-52 209.5 240 51.7
Lalb_Chr15g0084771 Lupinus albus HOM05D002996 ORTHO05D003536 3.8e-52 209.5 273 49.5
arahy.Tifrunner.gnm1.ann1.RDL55E Arachis hypogaea HOM05D002996 ORTHO05D003536 6.5e-52 208.8 276 47.1
EL10Ac2g04480 Beta vulgaris HOM05D002996 ORTHO05D003536 1.5e-51 207.6 276 47.8
MD17G1256700 Malus domestica HOM05D002996 ORTHO05D003536 1.9e-51 207.2 272 46.0
TAR622G0566 Trochodendron aralioides HOM05D002996 ORTHO05D003536 1.9e-51 207.2 275 46.2
CSS0002683 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 2.5e-51 206.8 276 47.5
Glyma.11G218000 Glycine max HOM05D002996 ORTHO05D003536 2.5e-51 206.8 273 46.9
FAN18G1791 Fragaria x ananassa HOM05D002996 ORTHO05D003536 3.2e-51 206.5 279 45.9
Lj6g0006116 Lotus japonicus HOM05D002996 ORTHO05D003536 3.2e-51 206.5 275 48.4
PSO017G4487 Papaver somniferum HOM05D002996 ORTHO05D003536 3.2e-51 206.5 276 46.7
PSO478G4946 Papaver somniferum HOM05D002996 ORTHO05D003536 4.2e-51 206.1 276 45.3
Lsat_1_v5_gn_2_81521 Lactuca sativa HOM05D002996 ORTHO05D003536 5.5e-51 205.7 284 46.1
TWI77G0049 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 5.5e-51 205.7 266 47.0
Eucgr.F02825 Eucalyptus grandis HOM05D002996 ORTHO05D003536 7.2e-51 205.3 322 41.3
Glyma.18G039000 Glycine max HOM05D002996 ORTHO05D003536 1.2e-50 204.5 272 46.3
HanXRQChr07g0193641 Helianthus annuus HOM05D002996 ORTHO05D003536 1.2e-50 204.5 211 52.1
Manes.02G074800 Manihot esculenta HOM05D002996 ORTHO05D003536 1.6e-50 204.1 325 40.0
Potri.017G128300 Populus trichocarpa HOM05D002996 ORTHO05D003536 1.6e-50 204.1 272 45.6
CSS0016713 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 2.1e-50 203.8 274 44.9
AUR62023237 Chenopodium quinoa HOM05D002996 ORTHO05D003536 2.1e-50 203.8 275 46.2
Manes.01G115900 Manihot esculenta HOM05D002996 ORTHO05D003536 2.1e-50 203.8 327 41.6
Lsat_1_v5_gn_4_154680 Lactuca sativa HOM05D002996 ORTHO05D003536 2.7e-50 203.4 207 54.6
Duzib133G0038 Durio zibethinus HOM05D002996 ORTHO05D003536 3.6e-50 203.0 257 47.9
Ca_08163_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 6.1e-50 202.2 270 45.2
Nn4g24147 Nelumbo nucifera HOM05D002996 ORTHO05D003536 8.0e-50 201.8 272 46.0
MELO3C020288.2 Cucumis melo HOM05D002996 ORTHO05D003536 1.0e-49 201.4 274 45.6
SGA_v2.0_scaffold13G06389 Striga asiatica HOM05D002996 ORTHO05D003536 1.0e-49 201.4 276 44.6
CsaV3_3G021610 Cucumis sativus L. HOM05D002996 ORTHO05D003536 1.8e-49 200.7 273 45.8
Migut.L00466 Erythranthe guttata HOM05D002996 ORTHO05D003536 1.8e-49 200.7 275 45.5
Dinv14879 Davidia involucrata HOM05D002996 ORTHO05D003536 3.0e-49 199.9 292 45.5
HanXRQChr09g0262271 Helianthus annuus HOM05D002996 ORTHO05D003536 3.0e-49 199.9 218 51.4
TWI74G1665 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 3.0e-49 199.9 273 46.2
HanXRQChr09g0262281 Helianthus annuus HOM05D002996 ORTHO05D003536 5.2e-49 199.1 212 52.8
Sabra17G0107000 Salix brachista HOM05D002996 ORTHO05D003536 5.2e-49 199.1 272 44.1
Sed0026936 Sechium edule HOM05D002996 ORTHO05D003536 5.2e-49 199.1 323 39.9
ATR0053G010 Amborella trichopoda HOM05D002996 ORTHO05D003536 6.8e-49 198.7 274 43.8
Os02g0712000 Oryza sativa ssp. japonica HOM05D002996 ORTHO05D003536 6.8e-49 198.7 264 47.0
Medtr3g067695 Medicago truncatula HOM05D002996 ORTHO05D003536 2.0e-48 197.2 269 45.7
Sopen03g007520 Solanum pennellii HOM05D002996 ORTHO05D003536 2.0e-48 197.2 268 45.1
MSTRG.3518 Avicennia marina HOM05D002996 ORTHO05D003536 4.4e-48 196.1 274 46.7
ECA238G4747 Erigeron canadensis HOM05D002996 ORTHO05D003536 4.4e-48 196.1 227 49.3
CAN.G625.86 Capsicum annuum HOM05D002996 ORTHO05D003536 5.7e-48 195.7 279 44.4
Solyc02g091410.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 5.7e-48 195.7 318 40.9
Sopen02g036030 Solanum pennellii HOM05D002996 ORTHO05D003536 5.7e-48 195.7 318 40.9
CAN.G11.11 Capsicum annuum HOM05D002996 ORTHO05D003536 1.7e-47 194.1 267 45.3
Cc07_g08150 Coffea canephora HOM05D002996 ORTHO05D003536 2.2e-47 193.7 281 42.3
Migut.H00264 Erythranthe guttata HOM05D002996 ORTHO05D003536 2.2e-47 193.7 214 50.5
Nitab4.5_0002366g0050 Nicotiana tabacum HOM05D002996 ORTHO05D003536 2.2e-47 193.7 270 44.4
Zm00001eb252510 Zea mays HOM05D002996 ORTHO05D003536 2.2e-47 193.7 269 44.2
Solyc03g043660.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 3.7e-47 193.0 268 44.8
AUR62023190 Chenopodium quinoa HOM05D002996 ORTHO05D003536 1.4e-46 191.0 316 41.5
Oeu000903.1 Olea europaea HOM05D002996 ORTHO05D003536 2.4e-46 190.3 270 44.1
Rhsim10G0079400 Rhododendron simsii HOM05D002996 ORTHO05D003536 2.4e-46 190.3 264 45.1
Rhsim10G0079500 Rhododendron simsii HOM05D002996 ORTHO05D003536 2.4e-46 190.3 273 42.9
CDE10G0501 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 5.4e-46 189.1 280 42.5
TAR374G0579 Trochodendron aralioides HOM05D002996 ORTHO05D003536 9.1e-46 188.3 270 44.4
SMO361G0084 Selaginella moellendorffii HOM05D002996 ORTHO05D003536 1.2e-45 188.0 263 43.7
Pp3c2_7790 Physcomitrium patens HOM05D002996 ORTHO05D003536 2.0e-45 187.2 244 42.6
Oeu047419.3 Olea europaea HOM05D002996 ORTHO05D003536 3.5e-45 186.4 279 45.2
Mapoly0003s0272 Marchantia polymorpha HOM05D002996 ORTHO05D003536 1.0e-44 184.9 287 42.9
Manes.01G116000 Manihot esculenta HOM05D002996 ORTHO05D003536 1.7e-44 184.1 272 43.0
MSTRG.15319 Avicennia marina HOM05D002996 ORTHO05D003536 5.0e-44 182.6 276 42.8
Sabra04G0059000 Salix brachista HOM05D002996 ORTHO05D003536 9.5e-43 178.3 306 38.2
Potri.004G088600 Populus trichocarpa HOM05D002996 ORTHO05D003536 1.2e-40 171.4 272 40.4
PSO170G1396 Papaver somniferum HOM05D002996 ORTHO05D003536 3.4e-40 169.9 263 42.2
Pp3c1_28480 Physcomitrium patens HOM05D002996 ORTHO05D003536 5.7e-40 169.1 236 40.7
PSO339G5742 Papaver somniferum HOM05D002996 ORTHO05D003536 1.3e-39 167.9 272 41.5
PSO407G0242 Papaver somniferum HOM05D002996 ORTHO05D003536 3.7e-39 166.4 263 39.9
FAN09G1552 Fragaria x ananassa HOM05D002996 ORTHO05D003536 7.8e-37 158.7 151 58.9
Potri.004G088700 Populus trichocarpa HOM05D002996 ORTHO05D003536 3.9e-36 156.4 276 38.0
Sabra04G0059100 Salix brachista HOM05D002996 ORTHO05D003536 5.6e-35 152.5 277 38.3
SEGI_30841 Sequoiadendron giganteum HOM05D002996 ORTHO05D003536 5.2e-33 146.0 96 71.9
vmacro18050 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 1.3e-28 131.3 227 40.5
Nitab4.5_0000465g0030 Nicotiana tabacum HOM05D002996 ORTHO05D003536 1.8e-25 120.9 226 40.7
DCAR_010737 Daucus carota HOM05D002996 ORTHO05D003536 3.7e-23 113.2 280 34.6
FAN04G0036 Fragaria x ananassa HOM05D002996 ORTHO05D003536 1.4e-22 111.3 75 74.7
Cre03.g180650 Chlamydomonas reinhardtii HOM05D002996 ORTHO05D003536 1.9e-22 110.9 248 31.5
Ah.16g101290 Amaranthus hybridus HOM05D002996 ORTHO05D003536 2.3e-20 104.0 229 34.5
CsaV3_1G027810 Cucumis sativus L. HOM05D002996 ORTHO05D003536 1.9e-14 84.3 196 35.2
Peaxi162Scf00003g00013 Petunia axillaris HOM05D002996 ORTHO05D003536 3.5e-13 80.1 126 41.3
SalBow7G0652 Salvia bowleyana HOM05D002996 ORTHO05D003536 6.0e-13 79.3 136 38.2
MCO10G011 Micromonas commoda HOM05D002996 ORTHO05D003536 1.7e-12 77.8 89 42.7
Nitab4.5_0003360g0070 Nicotiana tabacum HOM05D002996 ORTHO05D003536 3.9e-12 76.6 122 41.0
ClCG05G010970 Citrullus lanatus HOM05D002996 ORTHO05D003536 4.3e-11 73.2 123 40.7
Cfa007838 Carpinus fangiana HOM05D002996 ORTHO05D003536 9.6e-11 72.0 116 40.5
MBI16_g14303_MAGBIO Magnolia biondii HOM05D002996 ORTHO05D003536 1.6e-10 71.2 132 35.6
Haze_14227 Corylus avellana HOM05D002996 ORTHO05D003536 2.1e-10 70.9 116 39.7
Nitab4.5_0004399g0040 Nicotiana tabacum HOM05D002996 ORTHO05D003536 2.1e-10 70.9 124 37.1
Ca_17109_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 3.6e-10 70.1 127 37.0
CDE10G1224 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 6.2e-10 69.3 121 38.0
vmacro05502 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 3.1e-09 67.0 123 39.0
Peaxi162Scf00118g00223 Petunia axillaris HOM05D002996 ORTHO05D003536 3.4e-08 63.5 108 38.0
SEGI_00152 Sequoiadendron giganteum HOM05D002996 ORTHO05D021455 3.4e-08 63.5 110 34.5
vmacro05510 Vaccinium macrocarpon HOM05D002996 ORTHO05D021455 5.8e-08 62.8 137 30.7
Actinidia17658 Actinidia chinensis HOM05D002996 ORTHO05D003536 2.9e-07 60.5 36 69.4
TPR.G27497 Trifolium pratense HOM05D002996 ORTHO05D003536 6.4e-07 59.3 38 60.5
Lsat_1_v5_gn_2_24061 Lactuca sativa HOM05D002996 ORTHO05D003536 8.4e-07 58.9 42 61.9
Lsat_1_v5_gn_6_41640 Lactuca sativa HOM05D002996 ORTHO05D021455 2.4e-06 57.4 156 33.3


User provided reference genes

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