Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10010709m.g Eutrema salsugineum HOM05D006223 ORTHO05D009080 9.4e-108 393.7 217 100.0
Sp5g12220 Schrenkiella parvula HOM05D006223 ORTHO05D009080 2.9e-93 345.5 217 86.6
CARHR158970 Cardamine hirsuta HOM05D006223 ORTHO05D009080 8.3e-88 327.4 218 80.7
AL5G29900 Arabidopsis lyrata HOM05D006223 ORTHO05D009080 1.1e-87 327.0 221 77.4
AT3G49890 Arabidopsis thaliana HOM05D006223 ORTHO05D009080 3.5e-86 322.0 221 74.2
A03p47580 Brassica napus HOM05D006223 ORTHO05D009080 2.9e-80 302.4 221 80.5
Carub.0005s1625 Capsella rubella HOM05D006223 ORTHO05D009080 2.4e-79 299.3 209 79.4
Aa31LG4G18340 Aethionema arabicum HOM05D006223 ORTHO05D009080 3.6e-75 285.4 215 73.0
BraA03t13871Z Brassica rapa HOM05D006223 ORTHO05D009080 1.8e-74 283.1 209 80.4
C07p45560 Brassica napus HOM05D006223 ORTHO05D009080 6.2e-67 258.1 221 70.6
BolC7t45077H Brassica oleracea HOM05D006223 ORTHO05D009080 6.2e-67 258.1 221 70.6
THA.LOC104827599 Tarenaya hassleriana HOM05D006223 ORTHO05D009080 2.3e-61 239.6 201 68.2
Cpa.g.sc6.19 Carica papaya HOM05D006223 ORTHO05D009080 9.6e-44 181.0 211 48.8
Glyma.17G160900 Glycine max HOM05D006223 ORTHO05D009080 9.6e-44 181.0 209 47.4
Duzib147G0613 Durio zibethinus HOM05D006223 ORTHO05D009080 1.3e-40 170.6 228 43.9
Gohir.A11G215000 Gossypium hirsutum HOM05D006223 ORTHO05D009080 1.3e-40 170.6 234 44.9
Sed0023944 Sechium edule HOM05D006223 ORTHO05D009080 2.9e-40 169.5 220 46.8
CAN.G1075.35 Capsicum annuum HOM05D006223 ORTHO05D009080 8.4e-40 167.9 209 46.9
TPR.G24252 Trifolium pratense HOM05D006223 ORTHO05D009080 1.1e-39 167.5 218 43.6
Nitab4.5_0000142g0070 Nicotiana tabacum HOM05D006223 ORTHO05D009080 1.4e-39 167.2 205 44.9
Thecc.01G072400 Theobroma cacao HOM05D006223 ORTHO05D009080 1.4e-39 167.2 236 44.1
Atru.chr3.1008 Acer truncatum HOM05D006223 ORTHO05D009080 1.9e-39 166.8 223 41.7
TWI73G0604 Tripterygium wilfordii HOM05D006223 ORTHO05D009080 1.9e-39 166.8 209 45.5
Glyma.05G105500 Glycine max HOM05D006223 ORTHO05D009080 4.2e-39 165.6 199 44.7
Sabra01G0139200 Salix brachista HOM05D006223 ORTHO05D009080 4.2e-39 165.6 212 45.3
Manes.12G113900 Manihot esculenta HOM05D006223 ORTHO05D009080 7.1e-39 164.9 209 44.5
TWI09G0585 Tripterygium wilfordii HOM05D006223 ORTHO05D009080 1.2e-38 164.1 204 45.1
Actinidia11984 Actinidia chinensis HOM05D006223 ORTHO05D009080 1.6e-38 163.7 223 43.9
CSS0009729 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 1.6e-38 163.7 196 43.9
Phvul.003G235100 Phaseolus vulgaris HOM05D006223 ORTHO05D009080 2.1e-38 163.3 209 42.1
Medtr4g097030 Medicago truncatula HOM05D006223 ORTHO05D009080 2.7e-38 162.9 218 42.7
Ca_22107_v3 Cicer arietinum L. HOM05D006223 ORTHO05D009080 7.9e-38 161.4 220 45.0
Ca_22114_v3 Cicer arietinum L. HOM05D006223 ORTHO05D009080 7.9e-38 161.4 220 45.0
Nn5g30588 Nelumbo nucifera HOM05D006223 ORTHO05D009080 5.1e-37 158.7 219 43.8
PGSC0003DMG400021418 Solanum tuberosum HOM05D006223 ORTHO05D009080 6.7e-37 158.3 216 44.4
C08p24920 Brassica napus HOM05D006223 ORTHO05D009080 1.1e-36 157.5 158 58.2
Haze_15285 Corylus avellana HOM05D006223 ORTHO05D009080 1.1e-36 157.5 226 41.6
Gorai.007G223400 Gossypium raimondii HOM05D006223 ORTHO05D009080 1.5e-36 157.1 160 50.0
Nitab4.5_0002119g0100 Nicotiana tabacum HOM05D006223 ORTHO05D009080 1.9e-36 156.8 210 41.0
Solyc02g092390.3 Solanum lycopersicum HOM05D006223 ORTHO05D009080 2.5e-36 156.4 201 44.3
Sopen02g036940 Solanum pennellii HOM05D006223 ORTHO05D009080 2.5e-36 156.4 198 46.0
GSVIVG01000109001 Vitis vinifera HOM05D006223 ORTHO05D009080 2.5e-36 156.4 206 42.2
MSTRG.23673 Avicennia marina HOM05D006223 ORTHO05D009080 3.3e-36 156.0 205 44.4
BolC8t50110H Brassica oleracea HOM05D006223 ORTHO05D009080 3.3e-36 156.0 158 57.6
Gohir.D11G208400 Gossypium hirsutum HOM05D006223 ORTHO05D009080 4.3e-36 155.6 160 49.4
VMungo0251G3324 Vigna mungo HOM05D006223 ORTHO05D009080 4.3e-36 155.6 209 41.1
Potri.001G172500 Populus trichocarpa HOM05D006223 ORTHO05D009080 5.6e-36 155.2 202 45.0
Hund16399 Selenicereus undatus HOM05D006223 ORTHO05D009080 5.6e-36 155.2 219 42.0
Dinv04050 Davidia involucrata HOM05D006223 ORTHO05D009080 7.4e-36 154.8 205 40.0
AUR62040240 Chenopodium quinoa HOM05D006223 ORTHO05D009080 1.3e-35 154.1 208 43.3
Lj7A96T45 Lonicera japonica HOM05D006223 ORTHO05D009080 1.3e-35 154.1 212 39.6
Ciclev10026365m.g Citrus clementina HOM05D006223 ORTHO05D009080 1.6e-35 153.7 220 41.8
AUR62004007 Chenopodium quinoa HOM05D006223 ORTHO05D009080 4.8e-35 152.1 195 45.1
Psat4g081960 Pisum sativum HOM05D006223 ORTHO05D009080 4.8e-35 152.1 215 41.4
GSVIVG01000118001 Vitis vinifera HOM05D006223 ORTHO05D009080 6.2e-35 151.8 193 40.9
MELO3C020909.2 Cucumis melo HOM05D006223 ORTHO05D009080 1.4e-34 150.6 209 43.1
Lj4g0019733 Lotus japonicus HOM05D006223 ORTHO05D009080 4.0e-34 149.1 210 40.0
CANSAT01G0277 Cannabis sativa HOM05D006223 ORTHO05D009080 5.3e-34 148.7 213 46.0
PSO170G6824 Papaver somniferum HOM05D006223 ORTHO05D009080 6.9e-34 148.3 202 43.6
ECA246G3554 Erigeron canadensis HOM05D006223 ORTHO05D009080 1.2e-33 147.5 201 42.3
Migut.H00350 Erythranthe guttata HOM05D006223 ORTHO05D009080 1.2e-33 147.5 209 39.2
TAR625G1165 Trochodendron aralioides HOM05D006223 ORTHO05D009080 1.2e-33 147.5 204 41.2
Eucgr.I00706 Eucalyptus grandis HOM05D006223 ORTHO05D009080 3.4e-33 146.0 212 38.2
CiPaw.01G004700 Carya illinoinensis HOM05D006223 ORTHO05D009080 3.8e-32 142.5 175 41.7
HanXRQChr15g0472641 Helianthus annuus HOM05D006223 ORTHO05D009080 3.8e-32 142.5 202 39.6
Peaxi162Scf00548g00643 Petunia axillaris HOM05D006223 ORTHO05D009080 3.8e-32 142.5 203 43.8
Cfa004130 Carpinus fangiana HOM05D006223 ORTHO05D009080 6.5e-32 141.7 149 47.0
Lalb_Chr05g0225861 Lupinus albus HOM05D006223 ORTHO05D009080 6.5e-32 141.7 201 40.8
FAN28G1261 Fragaria x ananassa HOM05D006223 ORTHO05D009080 2.5e-31 139.8 200 42.5
arahy.Tifrunner.gnm1.ann1.BP3FRD Arachis hypogaea HOM05D006223 ORTHO05D009080 4.2e-31 139.0 208 42.3
PGR004G2352 Punica granatum HOM05D006223 ORTHO05D009080 4.2e-31 139.0 163 44.8
FAN26G2055 Fragaria x ananassa HOM05D006223 ORTHO05D009080 7.1e-31 138.3 199 42.2
Prupe.6G221000 Prunus persica HOM05D006223 ORTHO05D009080 2.1e-30 136.7 216 39.8
Cc06_g22830 Coffea canephora HOM05D006223 ORTHO05D009080 3.5e-30 136.0 201 38.8
Aqoxy5G00869 Aquilegia oxysepala HOM05D006223 ORTHO05D009080 4.6e-30 135.6 212 39.2
ClCG02G012630 Citrullus lanatus HOM05D003401 ORTHO05D003906 7.9e-30 134.8 205 42.9
FvH4_1g17670 Fragaria vesca HOM05D006223 ORTHO05D009080 1.8e-29 133.7 199 42.2
RcHm_v2.0_Chr2g0108001 Rosa chinensis HOM05D006223 ORTHO05D009080 1.8e-29 133.7 196 40.3
DCAR_025799 Daucus carota HOM05D006223 ORTHO05D009080 2.3e-29 133.3 202 38.1
FAN19G0818 Fragaria x ananassa HOM05D006223 ORTHO05D009080 3.0e-29 132.9 198 42.4
Lsat_1_v5_gn_3_86181 Lactuca sativa HOM05D006223 ORTHO05D009080 3.0e-29 132.9 210 38.1
Ah.03g140550 Amaranthus hybridus HOM05D006223 ORTHO05D009080 6.7e-29 131.7 202 43.6
Rhsim10G0099700 Rhododendron simsii HOM05D006223 ORTHO05D009080 2.5e-28 129.8 225 40.0
CDE06G0771 Ceratophyllum demersum HOM05D006223 ORTHO05D009080 7.4e-28 128.3 197 38.1
BcaB05g23172 Brassica carinata HOM05D006223 ORTHO05D009080 3.1e-26 122.9 134 64.9
MD15G1297100 Malus domestica HOM05D006223 ORTHO05D009080 3.1e-26 122.9 158 42.4
HPP92_024913 Vanilla planifolia HOM05D006223 ORTHO05D009080 5.3e-26 122.1 231 35.9
arahy.Tifrunner.gnm1.ann1.83HTFG Arachis hypogaea HOM05D006223 ORTHO05D009080 1.2e-25 120.9 242 36.0
Zm00001eb400790 Zea mays HOM05D006223 ORTHO05D009080 7.6e-25 118.2 203 37.4
SGA_v2.0_scaffold72G24074 Striga asiatica HOM05D006223 ORTHO05D009080 1.7e-24 117.1 151 41.7
Os03g0201200 Oryza sativa ssp. japonica HOM05D006223 ORTHO05D009080 2.2e-24 116.7 213 41.3
Hma1.2p1_0852F.1_g228470 Hydrangea macrophylla HOM05D006223 ORTHO05D009080 1.6e-22 110.5 124 43.5
vmacro05408 Vaccinium macrocarpon HOM05D006223 ORTHO05D009080 7.9e-22 108.2 306 30.1
ATR1153G042 Amborella trichopoda HOM05D006223 ORTHO05D009080 6.7e-21 105.1 211 33.2
SHI12778 Sapria himalayana HOM05D006223 ORTHO05D009080 5.9e-17 92.0 180 35.0
CSS0032370 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 1.3e-16 90.9 93 49.5
EL10Ac6g15621 Beta vulgaris HOM05D006223 ORTHO05D009080 5.0e-16 89.0 194 32.5
Sc16g0002890 Simmondsia chinensis HOM05D006223 ORTHO05D009080 2.5e-15 86.7 141 40.4
COL.COLO4_11574 Corchorus olitorius HOM05D006223 ORTHO05D009080 2.1e-14 83.6 132 43.2
SEGI_10369 Sequoiadendron giganteum HOM05D006223 ORTHO05D009080 5.1e-13 79.0 158 34.8
Mapoly0001s0294 Marchantia polymorpha HOM05D006223 ORTHO05D009080 9.7e-12 74.7 222 36.9
HPP92_024909 Vanilla planifolia HOM05D006223 ORTHO05D009080 9.1e-10 68.2 69 53.6
FAN23G0832 Fragaria x ananassa HOM05D006223 ORTHO05D009080 8.5e-08 61.6 126 34.9
Pp3c5_6560 Physcomitrium patens HOM05D006223 ORTHO05D009080 1.1e-07 61.2 228 26.8
AagrBONN_evm.TU.Sc2ySwM_228.3102 Anthoceros agrestis HOM05D004796 ORTHO05D006527 9.4e-07 58.2 167 26.3


User provided reference genes

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