Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10009738m.g Eutrema salsugineum HOM05D007623 ORTHO05D009641 5.1e-180 635.6 437 100.0
AL1G25410 Arabidopsis lyrata HOM05D007623 ORTHO05D009641 1.8e-129 467.6 301 78.4
A06p09730 Brassica napus HOM05D007623 ORTHO05D009641 1.3e-122 444.9 437 80.3
BraA06t24162Z Brassica rapa HOM05D007623 ORTHO05D009641 1.3e-122 444.9 437 80.5
Sp1g12290 Schrenkiella parvula HOM05D007623 ORTHO05D009641 1.4e-121 441.4 279 79.9
C05p11430 Brassica napus HOM05D007623 ORTHO05D009641 5.0e-119 433.0 437 78.7
Carub.0001s1335 Capsella rubella HOM05D007623 ORTHO05D009641 7.5e-115 419.1 279 76.0
BolC5t29896H Brassica oleracea HOM05D007623 ORTHO05D009641 8.3e-114 415.6 436 77.3
BcaB02g06459 Brassica carinata HOM05D007623 ORTHO05D009641 5.9e-112 409.5 455 69.0
BcaC05g25269 Brassica carinata HOM05D007623 ORTHO05D009641 1.3e-111 408.3 276 76.1
Aa31LG7G1940 Aethionema arabicum HOM05D007623 ORTHO05D009641 7.5e-107 392.5 306 65.4
THA.LOC104805220 Tarenaya hassleriana HOM05D007623 ORTHO05D009641 1.2e-93 348.6 281 66.2
Haze_11851 Corylus avellana HOM05D007623 ORTHO05D009641 1.1e-70 272.3 293 50.2
Cfa008839 Carpinus fangiana HOM05D007623 ORTHO05D009641 1.5e-70 271.9 293 49.1
Thecc.02G321100 Theobroma cacao HOM05D007623 ORTHO05D009641 1.2e-67 262.3 306 48.7
Gorai.005G147900 Gossypium raimondii HOM05D007623 ORTHO05D009641 2.9e-66 257.7 302 48.0
Gohir.A03G106900 Gossypium hirsutum HOM05D007623 ORTHO05D009641 8.4e-66 256.1 302 47.7
COL.COLO4_27779 Corchorus olitorius HOM05D007623 ORTHO05D009641 1.6e-64 251.9 290 48.6
Prupe.2G062100 Prunus persica HOM05D007623 ORTHO05D009641 1.3e-63 248.8 305 43.6
CiPaw.06G095500 Carya illinoinensis HOM05D007623 ORTHO05D009641 3.0e-63 247.7 291 45.7
Dinv34009 Davidia involucrata HOM05D007623 ORTHO05D009641 1.5e-62 245.4 291 44.7
Manes.14G091100 Manihot esculenta HOM05D007623 ORTHO05D009641 6.2e-61 240.0 294 45.2
ClCG05G023480 Citrullus lanatus HOM05D007623 ORTHO05D009641 1.8e-60 238.4 300 43.0
CANSAT64G0130 Cannabis sativa HOM05D007623 ORTHO05D009641 5.3e-60 236.9 307 43.0
GSVIVG01010112001 Vitis vinifera HOM05D007623 ORTHO05D009641 1.2e-59 235.7 289 44.3
MD16G1054700 Malus domestica HOM05D007623 ORTHO05D009641 7.6e-59 233.0 299 43.1
CARHR014000 Cardamine hirsuta HOM05D007623 ORTHO05D009641 1.4e-57 228.8 152 78.3
CsaV3_3G030580 Cucumis sativus L. HOM05D007623 ORTHO05D009641 1.4e-57 228.8 292 44.2
MELO3C026661.2 Cucumis melo HOM05D007623 ORTHO05D009641 2.4e-57 228.0 285 43.9
FAN12G1349 Fragaria x ananassa HOM05D007623 ORTHO05D009641 2.4e-57 228.0 287 42.9
FvH4_4g29120 Fragaria vesca HOM05D007623 ORTHO05D009641 4.2e-57 227.3 287 42.9
Sabra10G0105800 Salix brachista HOM05D007623 ORTHO05D009641 9.3e-57 226.1 287 42.5
FAN22G0497 Fragaria x ananassa HOM05D007623 ORTHO05D009641 2.7e-56 224.6 295 42.0
FAN17G1802 Fragaria x ananassa HOM05D007623 ORTHO05D009641 3.9e-55 220.7 287 41.8
RcHm_v2.0_Chr4g0437181 Rosa chinensis HOM05D007623 ORTHO05D009641 3.9e-55 220.7 294 42.5
Actinidia31923 Actinidia chinensis HOM05D007623 ORTHO05D009641 5.1e-55 220.3 307 42.7
CSS0048304 Camellia sinensis var. sinensis HOM05D007623 ORTHO05D009641 5.1e-55 220.3 281 43.4
Sed0026487 Sechium edule HOM05D007623 ORTHO05D009641 6.6e-55 219.9 285 42.8
Atru.chr11.1545 Acer truncatum HOM05D007623 ORTHO05D009641 2.5e-54 218.0 315 41.0
Hund25149 Selenicereus undatus HOM05D007623 ORTHO05D009641 2.5e-54 218.0 301 43.2
CSS0034887 Camellia sinensis var. sinensis HOM05D007623 ORTHO05D009641 1.6e-53 215.3 281 42.7
Actinidia24041 Actinidia chinensis HOM05D007623 ORTHO05D009641 4.8e-53 213.8 303 41.3
Lj6A773T130 Lonicera japonica HOM05D007623 ORTHO05D009641 1.1e-52 212.6 294 41.2
vmacro01293 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 1.4e-52 212.2 289 41.9
SHI04831 Sapria himalayana HOM05D007623 ORTHO05D009641 5.3e-52 210.3 239 44.8
Nn1g03057 Nelumbo nucifera HOM05D007623 ORTHO05D009641 2.9e-50 204.5 320 38.1
Lsat_1_v5_gn_6_31920 Lactuca sativa HOM05D007623 ORTHO05D009641 1.1e-49 202.6 299 40.1
Aqoxy1G01216 Aquilegia oxysepala HOM05D007623 ORTHO05D009641 2.7e-48 198.0 289 36.3
AT1G13630 Arabidopsis thaliana HOM05D007623 ORTHO05D009641 2.3e-47 194.9 112 81.2
CARHR013990 Cardamine hirsuta HOM05D007623 ORTHO05D009641 7.4e-46 189.9 111 80.2
BcaB08g34697 Brassica carinata HOM05D007623 ORTHO05D009641 9.6e-46 189.5 120 80.8
Sopen00g002400 Solanum pennellii HOM05D007623 ORTHO05D009641 2.8e-45 188.0 242 40.1
PGSC0003DMG400019642 Solanum tuberosum HOM05D007623 ORTHO05D009641 1.4e-44 185.7 242 40.5
Prupe.7G020300 Prunus persica HOM05D007623 ORTHO05D009641 4.0e-44 184.1 213 46.5
EL10Ac6g14659 Beta vulgaris HOM05D007623 ORTHO05D009641 5.8e-43 180.3 264 40.5
DCAR_023738 Daucus carota HOM05D007623 ORTHO05D009641 3.8e-42 177.6 255 40.4
HanXRQChr08g0215011 Helianthus annuus HOM05D007623 ORTHO05D009641 3.8e-42 177.6 306 35.9
ECA233G1899 Erigeron canadensis HOM05D000630 ORTHO05D001413 2.1e-40 171.8 218 43.1
AUR62007860 Chenopodium quinoa HOM05D007623 ORTHO05D009641 6.7e-39 166.8 256 37.9
AUR62003048 Chenopodium quinoa HOM05D007623 ORTHO05D009641 6.2e-37 160.2 263 36.9
BcaB06g28282 Brassica carinata HOM05D007623 ORTHO05D009641 2.4e-36 158.3 117 72.6
Rhsim12G0070700 Rhododendron simsii HOM05D007623 ORTHO05D009641 3.4e-35 154.5 213 40.4
MD13G1055600 Malus domestica HOM05D007623 ORTHO05D009641 3.8e-34 151.0 133 55.6
Oeu019601.2 Olea europaea HOM05D007623 ORTHO05D009641 1.6e-32 145.6 193 40.4
Ah.03g137460 Amaranthus hybridus HOM05D007623 ORTHO05D009641 2.7e-32 144.8 261 34.1
Cc11_g11460 Coffea canephora HOM05D007623 ORTHO05D009641 1.0e-31 142.9 221 37.6
Sc11g0002680 Simmondsia chinensis HOM05D007623 ORTHO05D009641 1.8e-31 142.1 169 42.0
Migut.E00256 Erythranthe guttata HOM05D007623 ORTHO05D009641 3.0e-31 141.4 217 38.2
Gohir.D02G132000 Gossypium hirsutum HOM05D007623 ORTHO05D009641 2.5e-30 138.3 126 56.3
Cpa.g.c32845 Carica papaya HOM05D007623 ORTHO05D009641 2.8e-29 134.8 152 46.7
SGA_v2.0_scaffold287G47196 Striga asiatica HOM05D007623 ORTHO05D009641 2.8e-29 134.8 191 37.7
Ciclev10031004m.g Citrus clementina HOM05D007623 ORTHO05D009641 5.3e-28 130.6 119 52.9
Peaxi162Scf00188g01015 Petunia axillaris HOM05D007623 ORTHO05D009641 1.7e-26 125.6 119 50.4
TAR374G0443 Trochodendron aralioides HOM05D007623 ORTHO05D009641 1.0e-23 116.3 121 44.6
Nitab4.5_0000259g0170 Nicotiana tabacum HOM05D007623 ORTHO05D009641 6.7e-23 113.6 119 45.4
Nitab4.5_0011373g0020 Nicotiana tabacum HOM05D007623 ORTHO05D009641 4.3e-22 110.9 119 45.4
ATR0048G027 Amborella trichopoda HOM05D007623 ORTHO05D009641 1.7e-21 109.0 144 38.9
Zm00001eb045730 Zea mays HOM05D007623 ORTHO05D009641 5.3e-20 104.0 142 35.9
Lsat_1_v5_gn_3_22320 Lactuca sativa HOM05D007623 ORTHO05D009641 9.1e-20 103.2 190 40.0
TAR374G1445 Trochodendron aralioides HOM05D007623 ORTHO05D009641 2.1e-16 92.0 136 36.8
HPP92_001379 Vanilla planifolia HOM05D007623 ORTHO05D009641 3.0e-15 88.2 187 31.6
CAN.G680.12 Capsicum annuum HOM05D007623 ORTHO05D009641 4.4e-14 84.3 95 43.2
SEGI_39043 Sequoiadendron giganteum HOM05D007623 ORTHO05D009641 4.4e-14 84.3 177 28.8
arahy.Tifrunner.gnm1.ann1.GQ8ZCN Arachis hypogaea HOM05D002890 ORTHO05D009847 1.1e-09 69.7 250 22.8
Ah.10g029280 Amaranthus hybridus HOM05D007623 ORTHO05D009641 4.7e-08 64.3 133 33.1
Lsat_1_v5_gn_9_106260 Lactuca sativa HOM05D007455 ORTHO05D009431 1.0e-07 63.2 168 23.8
SEGI_11241 Sequoiadendron giganteum HOM05D007496 ORTHO05D009479 2.6e-06 58.5 145 25.5
Rhsim13G0211000 Rhododendron simsii HOM05D007455 ORTHO05D009431 3.3e-06 58.2 161 24.8
Haze_23220 Corylus avellana HOM05D007455 ORTHO05D009431 5.7e-06 57.4 247 23.9
QL04p014212 Quercus lobata HOM05D007455 ORTHO05D009431 7.5e-06 57.0 241 24.9


User provided reference genes

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