Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 1.8e-146 522.7 296 100.0
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 2.3e-117 426.0 298 78.5
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 1.3e-99 367.1 300 71.3
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 4.9e-99 365.2 296 73.6
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 2.1e-97 359.8 302 69.5
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 3.9e-96 355.5 304 70.1
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 5.6e-95 351.7 301 69.8
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 8.9e-93 344.4 284 73.6
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 1.2e-92 344.0 283 73.5
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 1.2e-92 344.0 308 65.3
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 2.6e-92 342.8 302 68.5
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 4.4e-92 342.0 301 70.8
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 1.3e-91 340.5 303 70.3
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 3.8e-91 339.0 297 71.7
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 4.2e-90 335.5 295 70.5
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 9.3e-90 334.3 291 64.6
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 2.1e-89 333.2 292 70.9
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 1.0e-88 330.9 283 71.4
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 1.9e-87 326.6 302 67.9
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 6.2e-86 321.6 300 66.0
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 3.2e-82 309.3 305 64.6
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 7.1e-82 308.1 302 64.9
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 1.3e-80 303.9 336 55.1
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 3.9e-80 302.4 301 64.1
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 2.8e-78 296.2 333 58.9
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 2.8e-70 269.6 311 49.2
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 4.5e-68 262.3 301 53.8
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 4.5e-68 262.3 301 53.8
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 2.2e-67 260.0 310 45.8
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.9e-67 259.6 310 45.8
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 3.8e-67 259.2 295 54.9
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 4.9e-67 258.8 310 45.8
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.9e-66 256.9 306 48.4
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 3.2e-66 256.1 306 53.3
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 5.5e-66 255.4 307 48.9
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 5.5e-66 255.4 311 47.3
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 6.0e-65 251.9 223 71.7
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 7.9e-65 251.5 312 46.2
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 5.1e-64 248.8 306 53.6
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 6.7e-64 248.4 306 52.9
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 3.3e-63 246.1 311 49.8
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 9.6e-63 244.6 311 49.8
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 1.3e-62 244.2 314 46.5
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 1.3e-62 244.2 306 50.0
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 1.3e-62 244.2 306 50.7
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 2.8e-62 243.0 311 49.8
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 1.1e-61 241.1 309 47.6
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 1.8e-61 240.4 302 50.7
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 4.1e-61 239.2 304 51.0
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 4.1e-61 239.2 316 46.5
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.2e-60 237.7 321 43.6
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 4.5e-60 235.7 312 49.7
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 5.9e-60 235.3 306 45.8
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 5.9e-60 235.3 302 48.0
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 1.3e-59 234.2 305 45.6
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 6.5e-59 231.9 304 44.7
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 8.5e-59 231.5 308 49.4
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 1.4e-58 230.7 309 46.6
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.9e-58 230.3 312 44.2
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 5.5e-58 228.8 308 50.3
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 9.3e-58 228.0 310 46.1
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 3.6e-57 226.1 307 49.5
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 4.6e-57 225.7 308 50.3
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 7.9e-57 224.9 316 50.0
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 1.0e-56 224.6 306 48.7
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 1.3e-56 224.2 309 44.7
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 2.3e-56 223.4 302 45.4
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 2.3e-56 223.4 310 45.8
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 3.0e-56 223.0 315 44.8
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 5.1e-56 222.2 310 45.2
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 6.7e-56 221.9 264 53.0
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 8.7e-56 221.5 301 46.2
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 3.3e-55 219.5 264 52.3
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 4.3e-55 219.2 301 45.8
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 5.7e-55 218.8 303 50.5
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 5.7e-55 218.8 303 50.5
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 1.3e-54 217.6 304 44.7
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 1.6e-54 217.2 301 45.5
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 2.2e-54 216.9 312 46.2
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 2.2e-54 216.9 302 44.0
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 2.2e-54 216.9 313 45.7
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 3.7e-54 216.1 300 43.7
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 2.4e-53 213.4 309 43.4
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 2.4e-53 213.4 362 38.1
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 3.1e-53 213.0 308 42.5
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 9.1e-53 211.5 311 48.2
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 2.6e-52 209.9 308 46.8
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 3.4e-52 209.5 308 41.9
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 5.9e-52 208.8 310 47.1
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 1.0e-51 208.0 302 48.3
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 2.2e-51 206.8 313 42.5
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 8.5e-51 204.9 307 41.0
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 1.1e-50 204.5 312 44.9
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.4e-50 204.1 297 48.8
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 1.9e-50 203.8 302 43.0
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 5.5e-50 202.2 298 43.0
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 5.5e-50 202.2 298 45.3
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.6e-49 200.7 310 40.6
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 2.1e-49 200.3 314 45.2
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 2.7e-49 199.9 258 45.0
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 1.0e-48 198.0 300 47.7
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 1.8e-48 197.2 310 45.8
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 2.3e-48 196.8 312 44.9
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 3.0e-48 196.4 301 43.9
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 3.3e-47 193.0 301 41.5
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 4.4e-47 192.6 301 44.5
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 2.2e-46 190.3 302 41.7
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 4.8e-46 189.1 272 45.2
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 6.3e-46 188.7 365 35.3
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 8.2e-46 188.3 295 41.7
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.8e-45 187.2 312 39.4
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 5.3e-45 185.7 297 43.8
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 6.9e-45 185.3 357 37.3
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 1.2e-44 184.5 256 49.2
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 1.3e-43 181.0 375 33.6
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 2.9e-43 179.9 365 34.8
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 3.8e-43 179.5 304 44.7
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 8.5e-43 178.3 315 40.0
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 2.5e-42 176.8 318 43.7
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 5.5e-42 175.6 304 41.8
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 9.4e-42 174.9 310 42.3
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.7e-41 173.3 310 42.3
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 2.7e-41 173.3 266 40.6
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 3.9e-40 169.5 369 36.6
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 3.3e-39 166.4 273 40.3
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 1.3e-38 164.5 236 44.5
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 3.7e-38 162.9 303 39.9
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 6.3e-38 162.2 209 45.0
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 1.0e-35 154.8 248 41.5
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 4.2e-34 149.4 276 37.3
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 9.4e-34 148.3 122 59.8
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 3.6e-33 146.4 298 35.2
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 6.1e-33 145.6 202 39.1
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 8.0e-33 145.2 123 61.0
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 1.7e-30 137.5 294 32.7
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 3.7e-30 136.3 126 56.3
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 8.2e-30 135.2 367 30.8
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 5.3e-29 132.5 170 49.4
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 5.3e-29 132.5 217 44.7
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 5.3e-29 132.5 170 49.4
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 5.3e-29 132.5 217 44.7
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 1.2e-28 131.3 240 43.8
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 2.9e-27 126.7 239 43.1
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 5.0e-27 125.9 124 49.2
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 9.4e-26 121.7 123 53.7
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 2.7e-25 120.2 111 56.8
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 3.6e-25 119.8 220 38.6
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 4.7e-25 119.4 311 31.5
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 4.0e-24 116.3 124 48.4
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 4.0e-24 116.3 124 48.4
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 5.2e-24 115.9 357 28.3
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 5.7e-23 112.5 124 49.2
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 1.4e-21 107.8 202 41.1
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 2.0e-20 104.0 145 43.4
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 1.3e-19 101.3 242 33.1
BcaB02g06539 Brassica carinata HOM05D003707 ORTHO05D004309 5.5e-18 95.9 84 72.6
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.0e-16 91.7 353 26.1
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 4.0e-16 89.7 185 34.6
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 4.0e-16 89.7 296 26.4
BraA09t41558Z Brassica rapa HOM05D065654 ORTHO05D032288 5.7e-15 85.9 228 37.3
A09p61960 Brassica napus HOM05D065654 ORTHO05D032288 9.8e-15 85.1 228 36.8
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 9.8e-15 85.1 244 37.7
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 3.7e-14 83.2 189 34.9
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 5.4e-13 79.3 54 74.1
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.2e-12 78.2 161 34.2
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.2e-12 78.2 259 27.4
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 1.3e-11 74.7 84 46.4
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 2.3e-11 73.9 72 51.4
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 2.3e-11 73.9 48 75.0
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 3.8e-11 73.2 102 45.1
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 3.8e-11 73.2 253 28.5
Mapoly0003s0015 Marchantia polymorpha HOM05D019185 ORTHO05D030113 8.0e-09 65.5 90 44.4
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 1.0e-08 65.1 59 50.8
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 3.0e-08 63.5 100 37.0
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 1.2e-07 61.6 275 28.0
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 2.0e-07 60.8 113 40.7
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 5.7e-07 59.3 113 39.8
MELO3C030322.2 Cucumis melo HOM05D003707 ORTHO05D004309 1.3e-06 58.2 187 28.9
Pp3c4_27130 Physcomitrium patens HOM05D019185 ORTHO05D030113 3.7e-06 56.6 85 38.8


User provided reference genes

Program Settings