Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1659.8 799 100.0
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1493.0 805 90.1
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1456.8 832 86.1
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1454.5 797 88.2
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1447.2 801 87.3
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1444.5 801 87.5
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1425.2 804 86.3
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 0.0e+00 1421.4 777 87.3
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1398.6 802 85.4
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1373.6 788 84.0
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1372.5 788 84.8
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1314.7 741 86.0
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1286.6 777 78.4
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1276.5 777 77.2
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1274.6 777 77.7
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1258.4 809 74.0
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1258.0 783 76.2
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1258.0 782 76.7
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1255.0 775 76.9
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1255.0 778 76.5
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1250.0 775 76.6
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1248.8 815 74.1
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1245.3 797 75.3
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1177.9 806 71.1
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1148.3 782 71.6
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1127.9 773 67.7
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1117.8 773 67.5
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1113.6 773 67.3
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1112.4 773 67.4
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1099.7 767 66.4
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1098.2 773 66.1
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1097.8 775 66.3
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1097.4 773 66.5
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1093.6 772 65.9
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1092.8 773 65.5
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1091.3 772 65.7
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1085.9 775 65.8
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1084.7 767 66.1
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1083.2 769 66.2
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1081.6 770 65.6
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1081.2 773 65.1
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1079.3 776 65.1
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1076.6 773 64.7
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1075.1 775 64.8
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 5.5e-312 1074.3 776 63.9
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.1e-310 1069.7 784 64.2
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 4.2e-310 1067.8 767 65.2
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 7.1e-310 1067.0 771 64.9
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 1.2e-309 1066.2 774 64.2
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 1.3e-308 1062.8 776 64.2
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 1.3e-308 1062.8 774 63.8
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.3e-308 1062.8 784 63.6
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 3.9e-308 1061.2 773 64.0
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 8.6e-308 1060.1 792 63.8
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 1.6e-306 1055.8 775 63.5
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 2.1e-306 1055.4 748 65.6
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 1.4e-305 1052.7 769 63.5
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 1.4e-305 1052.7 809 61.9
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 2.6e-304 1048.5 777 62.9
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 3.4e-304 1048.1 774 63.0
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 2.2e-303 1045.4 774 62.7
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 1.4e-302 1042.7 778 62.6
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 7.1e-302 1040.4 798 61.5
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 9.2e-302 1040.0 778 62.1
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 9.2e-302 1040.0 767 63.2
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 1.6e-301 1039.3 767 62.6
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 2.3e-300 1035.4 778 62.0
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 8.6e-300 1033.5 776 63.0
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 8.6e-300 1033.5 775 63.0
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 1.1e-299 1033.1 735 66.0
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 3.3e-299 1031.6 781 62.6
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 3.3e-299 1031.6 892 56.5
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 7.3e-299 1030.4 736 65.5
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 6.2e-298 1027.3 776 63.3
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 6.2e-298 1027.3 769 61.5
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 1.1e-297 1026.5 769 63.5
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 5.8e-296 1020.8 769 61.2
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 2.9e-295 1018.5 769 61.1
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 3.8e-295 1018.1 770 62.5
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 4.9e-295 1017.7 766 63.4
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 1.9e-294 1015.8 769 61.9
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 3.2e-294 1015.0 801 63.5
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 5.4e-294 1014.2 775 61.0
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 7.1e-294 1013.8 769 61.0
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 1.6e-293 1012.7 770 61.8
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 1.3e-292 1009.6 769 60.5
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 2.3e-292 1008.8 769 60.7
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 6.6e-292 1007.3 769 60.7
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.5e-291 1006.1 769 61.0
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 1.9e-291 1005.7 774 60.1
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 9.6e-291 1003.4 754 63.1
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 1.3e-290 1003.0 771 60.6
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 2.4e-289 998.8 770 60.3
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 1.1e-286 989.9 774 59.8
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 1.1e-286 989.9 773 59.6
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 2.1e-285 985.7 770 59.2
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 3.9e-284 981.5 793 58.9
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 1.9e-283 979.2 772 59.6
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 3.3e-283 978.4 785 59.2
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 4.3e-283 978.0 781 59.8
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 5.6e-283 977.6 771 59.5
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 9.6e-283 976.9 779 59.2
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 6.2e-282 974.2 774 59.8
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 5.3e-281 971.1 753 59.5
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 5.8e-280 967.6 787 58.8
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 1.3e-279 966.5 782 56.8
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 1.4e-278 963.0 800 61.4
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 2.7e-277 958.7 773 56.9
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 5.1e-276 954.5 779 59.2
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 8.7e-276 953.7 728 62.2
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 3.5e-269 931.8 762 58.1
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 1.3e-268 929.9 720 61.5
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 2.8e-266 922.2 839 54.5
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.2e-264 916.8 799 55.3
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 2.6e-264 915.6 767 57.0
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 6.1e-261 904.4 690 63.5
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 5.7e-259 897.9 774 56.1
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 5.7e-259 897.9 776 55.0
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 1.5e-251 873.2 785 58.1
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 3.7e-250 868.6 781 54.5
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 4.2e-238 828.6 476 80.9
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 8.8e-236 820.8 791 50.1
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 2.7e-229 799.3 795 49.8
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 2.7e-221 772.7 776 47.3
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 2.0e-216 756.5 574 61.7
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 2.5e-214 749.6 669 59.2
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 2.4e-209 733.0 790 45.6
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.4e-201 706.4 627 54.9
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 4.6e-192 675.6 682 47.5
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 5.2e-188 662.1 523 59.7
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 1.1e-182 644.4 574 59.2
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.1e-182 644.4 432 67.1
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 3.3e-182 642.9 662 51.1
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 8.9e-180 634.8 441 64.2
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 3.3e-158 563.1 427 60.7
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 4.0e-156 556.2 865 36.3
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 4.9e-154 549.3 506 51.6
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 6.5e-154 548.9 446 58.5
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 1.1e-153 548.1 512 52.1
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 4.7e-120 436.4 321 60.4
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 1.7e-114 417.9 915 33.8
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 3.4e-110 403.7 270 69.3
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 4.4e-102 376.7 356 53.1
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.3e-101 375.2 337 55.2
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 2.8e-101 374.0 322 55.3
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 1.1e-92 345.5 702 33.2
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 2.4e-84 317.8 243 60.9
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.4e-79 302.0 326 47.2
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 2.3e-79 301.2 531 34.5
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 8.9e-79 299.3 308 50.0
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 3.2e-76 290.8 309 48.5
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 2.4e-63 248.1 202 58.4
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 3.3e-49 201.1 137 66.4
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 1.1e-47 196.1 130 66.2
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 7.1e-44 183.3 101 77.2
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 3.3e-41 174.5 167 50.9
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 5.8e-38 163.7 108 71.3
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 1.4e-36 159.1 194 44.3
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 8.7e-26 123.2 81 66.7
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 2.0e-22 112.1 86 65.1
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 1.7e-21 109.0 70 74.3
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 3.6e-19 101.3 191 31.9
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 5.1e-18 97.4 84 52.4
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 3.3e-17 94.7 95 50.5
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 2.2e-16 92.0 43 90.7
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 3.7e-16 91.3 85 54.1
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 2.4e-15 88.6 60 68.3
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 1.2e-14 86.3 47 78.7
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 5.9e-14 84.0 95 49.5
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 5.9e-14 84.0 95 49.5
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 2.5e-12 78.6 40 82.5
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 7.2e-12 77.0 45 68.9
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 7.2e-12 77.0 39 84.6
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 3.9e-10 71.2 57 57.9
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 8.8e-10 70.1 44 68.2
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 1.7e-08 65.9 62 56.5


User provided reference genes

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