Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 2.1e-132 475.7 242 100.0
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 1.1e-85 320.5 182 90.7
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 1.5e-82 310.1 182 86.3
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 4.4e-82 308.5 182 85.2
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 3.8e-81 305.4 182 84.6
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 4.9e-81 305.1 182 84.6
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 3.2e-80 302.4 184 88.0
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 3.2e-80 302.4 182 83.5
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 5.4e-80 301.6 185 87.6
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 2.7e-79 299.3 184 85.9
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 3.5e-79 298.9 183 85.8
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 9.0e-67 257.7 182 74.2
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 1.5e-66 256.9 131 100.0
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 1.6e-63 246.9 156 78.8
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 2.3e-62 243.0 156 75.6
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 3.0e-62 242.7 172 71.5
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 1.5e-61 240.4 156 75.0
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 1.9e-61 240.0 161 76.4
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 2.5e-61 239.6 159 73.0
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 7.4e-61 238.0 158 75.3
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 1.3e-60 237.3 156 76.3
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 1.6e-60 236.9 158 75.3
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 3.7e-60 235.7 156 73.7
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 1.4e-59 233.8 176 67.0
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 1.4e-59 233.8 156 72.4
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 3.1e-59 232.6 159 71.7
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 5.3e-59 231.9 176 65.3
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 6.9e-59 231.5 170 69.4
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 6.9e-59 231.5 174 67.2
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 1.2e-58 230.7 156 73.7
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 2.0e-58 229.9 156 74.4
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 2.0e-58 229.9 156 73.1
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 2.6e-58 229.6 155 73.5
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 2.6e-58 229.6 156 72.4
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 2.6e-58 229.6 156 73.1
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 3.4e-58 229.2 193 62.7
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 7.6e-58 228.0 157 71.3
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 1.0e-57 227.6 156 70.5
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 1.7e-57 226.9 154 73.4
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 1.7e-57 226.9 159 71.7
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 1.7e-57 226.9 156 72.4
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 1.7e-57 226.9 156 72.4
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 2.2e-57 226.5 181 66.9
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 2.2e-57 226.5 159 71.7
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 2.9e-57 226.1 156 71.8
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 2.9e-57 226.1 156 70.5
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 3.8e-57 225.7 179 65.9
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 8.4e-57 224.6 177 65.5
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 8.4e-57 224.6 156 70.5
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 1.9e-56 223.4 156 70.5
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 1.9e-56 223.4 181 63.0
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 2.5e-56 223.0 177 65.0
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 2.5e-56 223.0 159 69.2
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 2.5e-56 223.0 156 71.8
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 7.2e-56 221.5 162 69.1
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 9.3e-56 221.1 166 68.7
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 9.3e-56 221.1 159 68.6
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 1.2e-55 220.7 156 69.9
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 2.7e-55 219.5 159 67.9
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 2.7e-55 219.5 172 68.0
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 4.6e-55 218.8 159 69.8
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 7.9e-55 218.0 169 66.9
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 1.0e-54 217.6 224 55.4
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 1.3e-54 217.2 143 81.1
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 3.9e-54 215.7 155 69.0
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 5.1e-54 215.3 182 62.1
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 6.7e-54 214.9 156 67.9
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 6.7e-54 214.9 180 62.2
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 5.7e-53 211.8 159 66.7
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 2.2e-52 209.9 158 65.8
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 2.8e-52 209.5 161 65.2
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 8.2e-52 208.0 155 69.0
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 4.1e-51 205.7 229 52.0
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 1.2e-50 204.1 167 63.5
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 2.6e-50 203.0 134 71.6
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 5.9e-50 201.8 213 54.9
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 1.7e-49 200.3 143 76.9
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 1.7e-49 200.3 213 54.0
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 2.2e-49 199.9 192 56.2
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 4.3e-45 185.7 127 72.4
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 9.4e-40 167.9 174 50.6
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 1.6e-39 167.2 175 49.7
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.6e-39 167.2 152 54.6
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 6.1e-39 165.2 156 59.0
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 6.1e-39 165.2 190 47.9
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 6.1e-39 165.2 156 58.3
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 6.1e-39 165.2 154 55.2
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 3.9e-38 162.5 159 52.8
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 6.7e-38 161.8 156 56.4
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 8.8e-38 161.4 157 56.7
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 4.4e-37 159.1 155 56.1
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 9.7e-37 157.9 86 93.0
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 3.7e-36 156.0 155 56.8
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 1.0e-33 147.9 155 52.3
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.0e-33 147.9 154 51.9
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 3.8e-33 146.0 156 55.8
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 2.5e-32 143.3 86 87.2
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 1.2e-31 141.0 197 45.2
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.8e-27 127.1 176 43.8
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 7.0e-27 125.2 176 43.2
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 9.1e-27 124.8 176 43.2
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 9.1e-27 124.8 175 42.9
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 1.6e-26 124.0 170 47.1
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 2.0e-26 123.6 188 43.6
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 6.1e-23 112.1 69 82.6
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 8.0e-23 111.7 64 87.5
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 8.8e-22 108.2 76 69.7
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 1.5e-21 107.5 103 62.1
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 3.4e-21 106.3 60 88.3
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 5.7e-21 105.5 77 72.7
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 3.7e-20 102.8 76 67.1
Cc02_g17080 Coffea canephora HOM05D005703 ORTHO05D006643 6.3e-20 102.1 70 70.0
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 2.4e-19 100.1 69 68.1
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 4.5e-18 95.9 115 48.7
unitig_0.g53 Utricularia gibba HOM05D005703 ORTHO05D006643 1.0e-17 94.7 71 63.4
MBI01_g29866_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 1.7e-17 94.0 73 60.3
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 1.6e-15 87.4 142 44.4
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 3.0e-14 83.2 121 34.7
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 8.8e-14 81.6 207 28.5
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 2.8e-12 76.6 68 60.3
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 1.1e-11 74.7 38 94.7
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 2.4e-11 73.6 38 92.1
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 9.2e-11 71.6 117 38.5
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 3.5e-10 69.7 47 74.5
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 3.3e-08 63.2 56 60.7
CAN.G878.5 Capsicum annuum HOM05D000269 ORTHO05D000216 7.3e-08 62.0 110 41.8
AUR62033094 Chenopodium quinoa HOM05D005703 ORTHO05D006643 2.8e-07 60.1 49 63.3
Oeu037764.1 Olea europaea HOM05D005703 ORTHO05D006643 3.6e-07 59.7 52 53.8
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 8.0e-07 58.5 116 31.9


User provided reference genes

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