Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 0.0e+00 1195.3 593 100.0
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 3.3e-304 1047.7 598 88.6
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 9.3e-291 1003.0 599 84.5
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 1.8e-289 998.8 599 83.8
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 3.9e-289 997.7 599 83.6
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 2.2e-247 859.0 595 72.6
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 1.5e-243 846.3 597 71.9
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 4.2e-243 844.7 601 71.2
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 1.8e-241 839.3 597 70.0
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 5.2e-241 837.8 598 72.1
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 1.4e-238 829.7 599 69.8
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 1.4e-238 829.7 600 70.5
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 2.4e-238 828.9 597 70.7
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 3.8e-236 821.6 598 70.6
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 8.5e-236 820.5 624 68.3
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 5.5e-235 817.8 598 69.9
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 6.3e-231 804.3 598 68.4
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 1.0e-225 786.9 595 66.9
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 2.3e-225 785.8 595 66.7
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 3.4e-224 781.9 597 66.5
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 4.4e-224 781.6 595 66.2
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 7.5e-224 780.8 595 66.2
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 8.3e-223 777.3 600 67.2
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 3.1e-222 775.4 596 66.3
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 4.1e-222 775.0 597 65.7
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 2.7e-221 772.3 595 65.4
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 1.3e-220 770.0 598 66.4
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 6.6e-220 767.7 595 65.7
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 4.3e-219 765.0 597 64.3
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 1.6e-218 763.1 671 59.5
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 1.6e-218 763.1 597 66.0
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 2.8e-218 762.3 597 64.7
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 2.8e-218 762.3 594 66.2
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 3.6e-218 761.9 595 65.2
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 8.0e-218 760.8 594 63.8
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 6.8e-217 757.7 594 65.3
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 8.9e-217 757.3 597 64.3
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 3.4e-216 755.4 596 65.4
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 1.7e-215 753.1 598 63.5
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 2.2e-215 752.7 593 64.6
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 3.2e-214 748.8 597 64.5
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 3.2e-214 748.8 594 63.1
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 2.0e-213 746.1 593 62.6
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 2.0e-213 746.1 600 63.5
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 1.0e-212 743.8 597 64.5
COL.COLO4_19454 Corchorus olitorius HOM05D004766 ORTHO05D006159 1.3e-212 743.4 463 82.7
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 3.9e-212 741.9 600 64.5
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 3.9e-212 741.9 598 63.9
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 1.5e-211 740.0 668 58.4
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 1.9e-211 739.6 599 62.1
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 4.3e-211 738.4 598 62.4
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 7.3e-211 737.6 600 63.2
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 9.5e-211 737.3 596 62.4
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 9.5e-211 737.3 598 62.9
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 1.2e-210 736.9 597 63.0
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 2.8e-210 735.7 618 62.6
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 4.7e-210 734.9 595 63.4
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 6.2e-210 734.6 594 63.1
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 6.2e-210 734.6 631 61.3
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 2.3e-209 732.6 594 62.6
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 6.8e-209 731.1 597 62.1
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 1.5e-208 729.9 596 63.4
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 2.0e-208 729.6 598 62.5
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 7.5e-208 727.6 596 62.1
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 4.9e-207 724.9 597 63.3
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 1.1e-206 723.8 611 60.4
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 1.1e-206 723.8 596 62.2
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 3.2e-206 722.2 595 63.4
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 4.1e-206 721.8 559 65.1
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 4.1e-206 721.8 599 61.8
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 5.4e-206 721.5 596 62.1
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 9.2e-206 720.7 597 63.5
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 9.2e-206 720.7 605 60.3
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 7.8e-205 717.6 602 63.3
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 1.7e-204 716.5 610 60.3
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 5.0e-204 714.9 603 61.2
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 8.6e-204 714.1 605 59.2
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 1.2e-202 710.3 599 61.3
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 1.2e-202 710.3 599 61.3
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 1.1e-201 707.2 598 60.9
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 1.1e-201 707.2 599 61.6
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 1.4e-201 706.8 598 61.2
Cfa001212 Carpinus fangiana HOM05D004766 ORTHO05D006159 5.2e-201 704.9 503 71.6
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 8.9e-201 704.1 593 57.8
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 8.9e-201 704.1 597 61.5
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 8.3e-199 697.6 598 60.0
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 1.4e-198 696.8 601 61.2
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 7.8e-197 691.0 598 59.0
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 1.7e-196 689.9 632 57.6
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 9.5e-195 684.1 599 60.6
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 4.7e-194 681.8 597 60.5
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 3.1e-193 679.1 560 62.0
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 3.4e-192 675.6 597 59.5
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 1.7e-191 673.3 535 63.9
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 8.4e-191 671.0 554 61.6
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 1.3e-188 663.7 596 58.2
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 1.6e-186 656.8 596 57.6
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 1.6e-181 640.2 579 58.7
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 2.4e-174 616.3 599 52.8
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 1.9e-171 606.7 601 52.2
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 1.4e-169 600.5 597 52.4
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 1.1e-163 580.9 596 51.0
BraA04t18557Z Brassica rapa HOM05D000154 ORTHO05D000092 6.2e-162 575.1 525 58.5
BolC4t28340H Brassica oleracea HOM05D000154 ORTHO05D000092 3.1e-161 572.8 525 58.3
MD01G1166300 Malus domestica HOM05D004766 ORTHO05D006159 2.0e-160 570.1 446 65.9
Hma1.2p1_2838F.1_g329300 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 1.4e-158 563.9 420 68.8
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 2.1e-157 560.1 593 50.1
Sopen06g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 6.7e-156 555.1 522 56.1
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 1.8e-153 547.0 600 48.0
C04p02090 Brassica napus HOM05D004766 ORTHO05D006159 4.1e-153 545.8 547 55.9
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 4.5e-152 542.3 624 48.6
SHI28878 Sapria himalayana HOM05D004766 ORTHO05D006159 8.0e-133 478.4 404 61.4
Pp3c21_8640 Physcomitrium patens HOM05D004766 ORTHO05D006159 2.9e-127 459.9 607 40.7
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 1.0e-119 434.9 582 43.5
TAR636G0335 Trochodendron aralioides HOM05D004766 ORTHO05D006159 1.0e-116 424.9 280 75.7
SMO347G0133 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 4.1e-113 412.9 601 40.1
Mapoly0030s0020 Marchantia polymorpha HOM05D004766 ORTHO05D006159 1.2e-104 384.8 619 37.2
SMO347G0333 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 1.0e-103 381.7 599 38.7
MD01G1183300 Malus domestica HOM05D004766 ORTHO05D006159 8.0e-101 372.1 407 52.1
Dinv21784 Davidia involucrata HOM05D004766 ORTHO05D006159 1.2e-99 368.2 331 60.7
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 7.8e-96 355.5 306 57.8
Peaxi162Scf00739g00014 Petunia axillaris HOM05D004766 ORTHO05D006159 4.7e-93 346.3 249 67.1
CBR_g29836 Chara braunii HOM05D004766 ORTHO05D006159 3.1e-92 343.6 625 35.8
BcaC02g12723 Brassica carinata HOM05D000154 ORTHO05D000092 8.9e-84 315.5 463 44.3
MCO09G187 Micromonas commoda HOM05D004766 ORTHO05D006159 6.0e-80 302.8 620 34.0
Solyc06g050200.2 Solanum lycopersicum HOM05D004766 ORTHO05D006159 1.5e-70 271.6 250 57.2
SalBow5G1700 Salvia bowleyana HOM05D004766 ORTHO05D006159 3.3e-62 243.8 366 42.3
Peaxi162Scf00739g00019 Petunia axillaris HOM05D004766 ORTHO05D006159 3.2e-57 227.3 286 47.6
BcaC02g12598 Brassica carinata HOM05D004766 ORTHO05D006159 6.0e-56 223.0 167 67.1
CSS0047727 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 5.6e-54 216.5 287 45.3
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 4.5e-51 206.8 133 68.4
PRCOL_00003324 Prasinoderma coloniale HOM05D004766 ORTHO05D006159 1.1e-46 192.2 562 29.9
Solyc06g050180.3 Solanum lycopersicum HOM05D004766 ORTHO05D006159 2.2e-42 177.9 288 39.9
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 2.5e-41 174.5 132 59.8
BolC4t21721H Brassica oleracea HOM05D004766 ORTHO05D006159 1.2e-40 172.2 134 62.7
BolC4t21857H Brassica oleracea HOM05D000154 ORTHO05D000092 1.2e-40 172.2 387 34.9
A05p01790 Brassica napus HOM05D004766 ORTHO05D006159 1.0e-39 169.1 128 66.4
BraA05t19176Z Brassica rapa HOM05D004766 ORTHO05D006159 7.2e-33 146.4 116 63.8
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 1.1e-25 122.5 96 59.4
AagrBONN_evm.TU.Sc2ySwM_228.73 Anthoceros agrestis HOM05D004766 ORTHO05D006159 3.6e-24 117.5 135 41.5
SHI28879 Sapria himalayana HOM05D004766 ORTHO05D006159 3.9e-23 114.0 177 36.2
Nn1g07504 Nelumbo nucifera HOM05D004766 ORTHO05D006159 1.1e-22 112.5 87 64.4
Cre01.g030150 Chlamydomonas reinhardtii HOM05D004766 ORTHO05D006159 2.0e-22 111.7 877 22.2
MBI11_g31297_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D000022 2.7e-16 91.3 75 57.3
AagrBONN_evm.TU.Sc2ySwM_336.9 Anthoceros agrestis HOM05D004766 ORTHO05D006159 5.3e-12 77.0 90 43.3
HanXRQChr15g0483741 Helianthus annuus HOM05D004766 ORTHO05D006159 2.6e-11 74.7 57 57.9
Peaxi162Scf00041g01211 Petunia axillaris HOM05D004766 ORTHO05D006159 1.7e-10 72.0 108 38.0
C07p45160 Brassica napus HOM05D004766 ORTHO05D033383 8.5e-10 69.7 112 37.5
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 8.5e-10 69.7 112 37.5
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 1.1e-09 69.3 42 71.4
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 1.1e-09 69.3 42 71.4
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 7.2e-09 66.6 41 70.7
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 1.2e-08 65.9 41 70.7
COL.COLO4_19455 Corchorus olitorius HOM05D004766 ORTHO05D006159 2.1e-08 65.1 35 91.4
SHI28880 Sapria himalayana HOM05D004766 ORTHO05D006159 2.1e-08 65.1 59 52.5


User provided reference genes

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