Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G073600 Theobroma cacao HOM05D008287 ORTHO05D010110 4.7e-43 177.6 97 100.0
Duzib114G0252 Durio zibethinus HOM05D008287 ORTHO05D010110 2.9e-32 141.7 99 81.8
Gohir.A13G024200 Gossypium hirsutum HOM05D008287 ORTHO05D010110 1.2e-30 136.3 97 82.5
Gohir.D13G023100 Gossypium hirsutum HOM05D008287 ORTHO05D010110 2.7e-30 135.2 97 81.4
Gorai.013G025800 Gossypium raimondii HOM05D008287 ORTHO05D010110 1.0e-29 133.3 98 79.6
Nn2g10792 Nelumbo nucifera HOM05D008287 ORTHO05D010110 9.6e-20 100.1 101 59.4
Actinidia38852 Actinidia chinensis HOM05D008287 ORTHO05D010110 1.3e-19 99.8 98 61.2
Manes.10G045900 Manihot esculenta HOM05D008287 ORTHO05D010110 5.3e-18 94.4 98 59.2
CiPaw.01G272900 Carya illinoinensis HOM05D008287 ORTHO05D010110 2.0e-17 92.4 108 53.7
TAR629G1172 Trochodendron aralioides HOM05D008287 ORTHO05D010110 4.5e-17 91.3 92 57.6
Hma1.2p1_0063F.1_g034480 Hydrangea macrophylla HOM05D008287 ORTHO05D010110 1.7e-16 89.4 82 58.5
Migut.F02005 Erythranthe guttata HOM05D008287 ORTHO05D010110 2.2e-16 89.0 95 55.8
Aqoxy1G01238 Aquilegia oxysepala HOM05D008287 ORTHO05D010110 7.1e-15 84.0 90 55.6
Sabra10G0172000 Salix brachista HOM05D008287 ORTHO05D010110 7.1e-15 84.0 83 49.4
Cfa021511 Carpinus fangiana HOM05D008287 ORTHO05D010110 1.2e-14 83.2 95 54.7
MSTRG.9186 Avicennia marina HOM05D008287 ORTHO05D010110 1.6e-14 82.8 95 54.7
CsaV3_5G036300 Cucumis sativus L. HOM05D008287 ORTHO05D010110 1.6e-14 82.8 104 53.8
PGSC0003DMG400012876 Solanum tuberosum HOM05D008287 ORTHO05D010110 1.6e-14 82.8 97 53.6
Sopen04g019400 Solanum pennellii HOM05D008287 ORTHO05D010110 6.0e-14 80.9 97 51.5
Atru.chr12.751 Acer truncatum HOM05D008287 ORTHO05D010110 7.9e-14 80.5 100 53.0
Solyc04g049407.1 Solanum lycopersicum HOM05D008287 ORTHO05D010110 7.9e-14 80.5 82 51.2
ClCG05G021010 Citrullus lanatus HOM05D008287 ORTHO05D010110 2.3e-13 79.0 89 47.2
Potri.010G222400 Populus trichocarpa HOM05D008287 ORTHO05D010110 2.3e-13 79.0 97 47.4
Sc09g0006380 Simmondsia chinensis HOM05D008287 ORTHO05D010110 1.5e-12 76.3 85 49.4
Rhsim09G0151900 Rhododendron simsii HOM05D008287 ORTHO05D010110 5.7e-12 74.3 96 46.9
Atru.chr12.776 Acer truncatum HOM05D008287 ORTHO05D010110 7.4e-12 73.9 87 48.3
Phvul.004G082500 Phaseolus vulgaris HOM05D008287 ORTHO05D010110 9.7e-12 73.6 98 49.0
Prupe.2G213800 Prunus persica HOM05D008287 ORTHO05D010110 9.7e-12 73.6 96 47.9
AT5G49015 Arabidopsis thaliana HOM05D013386 ORTHO05D010110 2.2e-11 72.4 95 49.5
AL8G22370 Arabidopsis lyrata HOM05D013386 ORTHO05D010110 2.8e-11 72.0 95 47.4
Glyma.02G073500 Glycine max HOM05D008287 ORTHO05D010110 2.8e-11 72.0 102 50.0
MBI10_g13401_MAGBIO Magnolia biondii HOM05D008287 ORTHO05D010110 3.7e-11 71.6 82 45.1
Ciclev10033160m.g Citrus clementina HOM05D008287 ORTHO05D010110 4.8e-11 71.2 98 48.0
Thhalv10005354m.g Eutrema salsugineum HOM05D013386 ORTHO05D010110 8.2e-11 70.5 97 45.4
HanXRQChr01g0011461 Helianthus annuus HOM05D008287 ORTHO05D010110 8.2e-11 70.5 93 40.9
Glyma.16G154900 Glycine max HOM05D008287 ORTHO05D010110 1.1e-10 70.1 99 48.5
Nitab4.5_0000575g0160 Nicotiana tabacum HOM05D008287 ORTHO05D010110 1.8e-10 69.3 97 46.4
Lalb_Chr19g0129701 Lupinus albus HOM05D008287 ORTHO05D010110 2.4e-10 68.9 94 42.6
Aa31sc101G40 Aethionema arabicum HOM05D013386 ORTHO05D010110 4.1e-10 68.2 97 41.2
Carub.0008s0883 Capsella rubella HOM05D013386 ORTHO05D010110 5.3e-10 67.8 95 47.4
CARHR286230 Cardamine hirsuta HOM05D013386 ORTHO05D010110 9.0e-10 67.0 95 46.3
TPR.G822 Trifolium pratense HOM05D008287 ORTHO05D010110 1.2e-09 66.6 98 42.9
FAN01G1692 Fragaria x ananassa HOM05D008287 ORTHO05D010110 1.5e-09 66.2 97 47.4
Sed0007335 Sechium edule HOM05D008287 ORTHO05D010110 1.5e-09 66.2 103 46.6
Cc06_g14360 Coffea canephora HOM05D008287 ORTHO05D010110 3.4e-09 65.1 104 44.2
unitig_899.g14438 Utricularia gibba HOM05D008287 ORTHO05D010110 7.6e-09 63.9 82 43.9
arahy.Tifrunner.gnm1.ann1.7IIA7U Arachis hypogaea HOM05D008287 ORTHO05D010110 1.0e-08 63.5 94 41.5
FAN10G2561 Fragaria x ananassa HOM05D008287 ORTHO05D010110 1.0e-08 63.5 97 46.4
Nitab4.5_0010206g0030 Nicotiana tabacum HOM05D008287 ORTHO05D010110 1.0e-08 63.5 82 41.5
arahy.Tifrunner.gnm1.ann1.LAB5TB Arachis hypogaea HOM05D008287 ORTHO05D010110 1.3e-08 63.2 94 41.5
Sabra17G0123100 Salix brachista HOM05D008287 ORTHO05D010110 1.7e-08 62.8 60 51.7
Potri.008G039901 Populus trichocarpa HOM05D008287 ORTHO05D010110 2.2e-08 62.4 83 41.0
FvH4_7g19600 Fragaria vesca HOM05D008287 ORTHO05D010110 3.8e-08 61.6 97 45.4
MD01G1108600 Malus domestica HOM05D008287 ORTHO05D010110 3.8e-08 61.6 98 41.8
VMungo0464G1886 Vigna mungo HOM05D008287 ORTHO05D010110 3.8e-08 61.6 86 44.2
RcHm_v2.0_Chr1g0363411 Rosa chinensis HOM05D008287 ORTHO05D010110 6.5e-08 60.8 54 61.1
FAN06G2349 Fragaria x ananassa HOM05D000286 ORTHO05D009721 8.5e-08 60.5 54 59.3
FAN03G0373 Fragaria x ananassa HOM05D008287 ORTHO05D010110 1.1e-07 60.1 54 61.1
PGR142G4013 Punica granatum HOM05D008287 ORTHO05D010110 3.2e-07 58.5 105 33.3
Sabra08G0027300 Salix brachista HOM05D008287 ORTHO05D010110 5.5e-07 57.8 36 66.7
CSS0035042 Camellia sinensis var. sinensis HOM05D008287 ORTHO05D010110 7.2e-07 57.4 32 75.0
Medtr6g033505 Medicago truncatula HOM05D008287 ORTHO05D010110 1.6e-06 56.2 94 39.4
ECA238G2524 Erigeron canadensis HOM05D008287 ORTHO05D010110 2.7e-06 55.5 92 38.0
Lsat_1_v5_gn_2_114761 Lactuca sativa HOM05D008287 ORTHO05D010110 3.6e-06 55.1 82 37.8


User provided reference genes

Program Settings