Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G004500 Theobroma cacao HOM05D007435 ORTHO05D009338 5.6e-72 274.2 146 100.0
Duzib128G0703 Durio zibethinus HOM05D007435 ORTHO05D009338 8.2e-47 190.7 146 75.3
Duzib114G0226 Durio zibethinus HOM05D007435 ORTHO05D009338 1.4e-43 179.9 150 72.7
COL.COLO4_19345 Corchorus olitorius HOM05D007435 ORTHO05D009338 9.3e-43 177.2 146 71.9
TAR065G0004 Trochodendron aralioides HOM05D007435 ORTHO05D009338 1.7e-28 129.8 146 60.3
Gorai.011G291600 Gossypium raimondii HOM05D007435 ORTHO05D009338 2.2e-28 129.4 183 50.8
Cpa.g.sc197.17 Carica papaya HOM05D007435 ORTHO05D009338 2.9e-28 129.0 147 56.5
Gohir.D10G251200 Gossypium hirsutum HOM05D007435 ORTHO05D009338 5.0e-28 128.3 183 50.3
Manes.11G002100 Manihot esculenta HOM05D007435 ORTHO05D009338 8.5e-28 127.5 139 59.0
Gohir.A10G239300 Gossypium hirsutum HOM05D007435 ORTHO05D009338 1.9e-27 126.3 184 50.5
TAR369G0027 Trochodendron aralioides HOM05D007435 ORTHO05D009338 7.2e-27 124.4 146 55.5
Dinv32059 Davidia involucrata HOM05D007435 ORTHO05D009338 1.2e-26 123.6 115 63.5
Rhsim05G0126700 Rhododendron simsii HOM05D007435 ORTHO05D009338 1.2e-26 123.6 134 55.2
Prupe.2G027100 Prunus persica HOM05D007435 ORTHO05D009338 1.6e-26 123.2 147 54.4
MD07G1027000 Malus domestica HOM05D007435 ORTHO05D009338 3.6e-26 122.1 146 54.8
AL343U10010 Arabidopsis lyrata HOM05D007435 ORTHO05D009338 1.1e-24 117.1 125 55.2
Dinv03572 Davidia involucrata HOM05D007435 ORTHO05D009338 3.3e-24 115.5 97 63.9
Dinv05039 Davidia involucrata HOM05D007435 ORTHO05D009338 3.3e-24 115.5 97 63.9
AT4G31560 Arabidopsis thaliana HOM05D007435 ORTHO05D009338 4.4e-24 115.2 125 54.4
Aa31LG2G18760 Aethionema arabicum HOM05D007435 ORTHO05D009338 5.7e-24 114.8 99 60.6
CARHR239440 Cardamine hirsuta HOM05D007435 ORTHO05D009338 5.7e-24 114.8 119 53.8
Carub.0007s0901 Capsella rubella HOM05D007435 ORTHO05D009338 8.2e-23 110.9 98 58.2
Actinidia21528 Actinidia chinensis HOM05D007435 ORTHO05D009338 1.1e-22 110.5 144 50.7
Eucgr.G03266 Eucalyptus grandis HOM05D007435 ORTHO05D009338 1.1e-22 110.5 147 53.7
TWI63G0886 Tripterygium wilfordii HOM05D007435 ORTHO05D009338 1.1e-22 110.5 150 49.3
Lj3g0014273 Lotus japonicus HOM05D007435 ORTHO05D009338 2.4e-22 109.4 140 50.0
MD02G1297000 Malus domestica HOM05D007435 ORTHO05D009338 2.4e-22 109.4 147 52.4
Nn7g36439 Nelumbo nucifera HOM05D007435 ORTHO05D009338 4.1e-22 108.6 143 49.7
CSS0019859 Camellia sinensis var. sinensis HOM05D007435 ORTHO05D009338 1.2e-21 107.1 93 62.4
Sp7g29390 Schrenkiella parvula HOM05D007435 ORTHO05D009338 1.5e-21 106.7 99 61.6
Actinidia02252 Actinidia chinensis HOM05D007435 ORTHO05D009338 2.6e-21 105.9 144 49.3
BcaNung01514 Brassica carinata HOM05D007435 ORTHO05D009338 2.6e-21 105.9 99 55.6
C07p58750 Brassica napus HOM05D007435 ORTHO05D009338 3.4e-21 105.5 99 55.6
BolC7t46323H Brassica oleracea HOM05D007435 ORTHO05D009338 3.4e-21 105.5 99 55.6
RcHm_v2.0_Chr1g0319401 Rosa chinensis HOM05D007435 ORTHO05D009338 4.5e-21 105.1 148 52.7
Cfa010840 Carpinus fangiana HOM05D007435 ORTHO05D009338 5.9e-21 104.8 150 48.0
FvH4_7g02100 Fragaria vesca HOM05D007435 ORTHO05D009338 5.9e-21 104.8 149 46.3
BcaNung04129 Brassica carinata HOM05D007435 ORTHO05D009338 7.7e-21 104.4 99 55.6
Haze_03106 Corylus avellana HOM05D007435 ORTHO05D009338 7.7e-21 104.4 150 47.3
Nitab4.5_0001775g0080 Nicotiana tabacum HOM05D007435 ORTHO05D009338 1.0e-20 104.0 113 55.8
A03p60860 Brassica napus HOM05D007435 ORTHO05D009338 1.7e-20 103.2 117 50.4
BraA03t15122Z Brassica rapa HOM05D007435 ORTHO05D009338 1.7e-20 103.2 117 50.4
Thhalv10026511m.g Eutrema salsugineum HOM05D007435 ORTHO05D009338 1.7e-20 103.2 98 55.1
Nitab4.5_0000316g0230 Nicotiana tabacum HOM05D002000 ORTHO05D002027 2.2e-20 102.8 113 53.1
C01p07440 Brassica napus HOM05D007435 ORTHO05D009338 2.9e-20 102.4 99 54.5
BolC1t00726H Brassica oleracea HOM05D007435 ORTHO05D009338 2.9e-20 102.4 99 54.5
CiPaw.13G009600 Carya illinoinensis HOM05D007435 ORTHO05D009338 3.8e-20 102.1 157 48.4
DCAR_009211 Daucus carota HOM05D007435 ORTHO05D009338 3.8e-20 102.1 133 48.9
FAN03G1772 Fragaria x ananassa HOM05D007435 ORTHO05D009338 3.8e-20 102.1 149 46.3
SGA_v2.0_scaffold354G49740 Striga asiatica HOM05D007435 ORTHO05D009338 5.0e-20 101.7 95 61.1
PGSC0003DMG401006753 Solanum tuberosum HOM05D007435 ORTHO05D009338 6.5e-20 101.3 98 54.1
QL04p012434 Quercus lobata HOM05D007435 ORTHO05D009338 1.1e-19 100.5 169 44.4
Solyc01g068190.3 Solanum lycopersicum HOM05D007435 ORTHO05D009338 1.1e-19 100.5 98 54.1
Sopen01g030130 Solanum pennellii HOM05D007435 ORTHO05D009338 1.1e-19 100.5 98 54.1
AUR62037244 Chenopodium quinoa HOM05D007435 ORTHO05D009338 1.9e-19 99.8 111 51.4
QL04p013057 Quercus lobata HOM05D007435 ORTHO05D009338 2.5e-19 99.4 166 44.6
BcaC09g51937 Brassica carinata HOM05D007435 ORTHO05D009338 4.2e-19 98.6 96 53.1
A01p06670 Brassica napus HOM05D005366 ORTHO05D006323 4.2e-19 98.6 113 48.7
BraA01t00625Z Brassica rapa HOM05D005366 ORTHO05D006323 4.2e-19 98.6 113 48.7
AUR62026808 Chenopodium quinoa HOM05D007435 ORTHO05D009338 4.2e-19 98.6 111 53.2
Psat5g213320 Pisum sativum HOM05D007435 ORTHO05D009338 4.2e-19 98.6 133 43.6
PGR031G0502 Punica granatum HOM05D007435 ORTHO05D009338 4.2e-19 98.6 132 50.0
Migut.N01821 Erythranthe guttata HOM05D007435 ORTHO05D009338 5.5e-19 98.2 122 49.2
ClCG01G007560 Citrullus lanatus HOM05D007435 ORTHO05D009338 9.4e-19 97.4 144 47.9
PSO339G5565 Papaver somniferum HOM05D007435 ORTHO05D009338 1.2e-18 97.1 160 47.5
unitig_578.g16053 Utricularia gibba HOM05D007435 ORTHO05D009338 1.6e-18 96.7 134 46.3
MELO3C005141.2 Cucumis melo HOM05D007435 ORTHO05D009338 2.7e-18 95.9 144 49.3
SalBow6G1324 Salvia bowleyana HOM05D007435 ORTHO05D009338 2.7e-18 95.9 93 55.9
Peaxi162Scf00087g00129 Petunia axillaris HOM05D007435 ORTHO05D009338 4.7e-18 95.1 159 44.0
THA.LOC104826709 Tarenaya hassleriana HOM05D007435 ORTHO05D009338 4.7e-18 95.1 151 46.4
Potri.001G022500 Populus trichocarpa HOM05D007435 ORTHO05D009338 6.1e-18 94.7 157 49.7
Medtr3g023160 Medicago truncatula HOM05D007435 ORTHO05D009338 1.4e-17 93.6 98 51.0
Lalb_Chr25g0282731 Lupinus albus HOM05D007435 ORTHO05D009338 2.3e-17 92.8 146 44.5
Sc10g0004150 Simmondsia chinensis HOM05D007435 ORTHO05D009338 5.2e-17 91.7 146 43.8
Lsat_1_v5_gn_1_100400 Lactuca sativa HOM05D007435 ORTHO05D009338 6.7e-17 91.3 153 45.1
Ah.10g030920 Amaranthus hybridus HOM05D007435 ORTHO05D009338 1.5e-16 90.1 150 43.3
ECA248G3437 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.3e-16 89.0 150 45.3
MBI13_g04786_MAGBIO Magnolia biondii HOM05D007435 ORTHO05D009338 3.3e-16 89.0 92 58.7
CANSAT80G0490 Cannabis sativa HOM05D007435 ORTHO05D009338 4.4e-16 88.6 143 43.4
CsaV3_5G024570 Cucumis sativus L. HOM05D007435 ORTHO05D009338 9.7e-16 87.4 146 45.9
Ciclev10032994m.g Citrus clementina HOM05D007435 ORTHO05D009338 6.3e-15 84.7 99 50.5
Sabra01G0016900 Salix brachista HOM05D007435 ORTHO05D009338 8.2e-15 84.3 87 57.5
Sed0015818 Sechium edule HOM05D007435 ORTHO05D009338 8.2e-15 84.3 145 46.9
Atru.chr11.2511 Acer truncatum HOM05D007435 ORTHO05D009338 1.4e-14 83.6 153 43.1
ATR0006G035 Amborella trichopoda HOM05D007435 ORTHO05D009338 1.4e-14 83.6 98 55.1
HanXRQChr01g0020861 Helianthus annuus HOM05D007435 ORTHO05D009338 4.1e-14 82.0 145 42.1
Glyma.11G149600 Glycine max HOM05D007435 ORTHO05D009338 9.1e-14 80.9 123 45.5
arahy.Tifrunner.gnm1.ann1.4Y0UDN Arachis hypogaea HOM05D007435 ORTHO05D009338 3.5e-13 79.0 108 46.3
Hma1.2p1_0269F.1_g107800 Hydrangea macrophylla HOM05D007435 ORTHO05D009338 4.5e-13 78.6 184 34.8
CDE08G0963 Ceratophyllum demersum HOM05D000584 ORTHO05D009338 1.0e-12 77.4 144 41.7
vmacro19756 Vaccinium macrocarpon HOM05D007435 ORTHO05D009338 1.0e-12 77.4 65 61.5
Hund13323 Selenicereus undatus HOM05D000185 ORTHO05D000105 8.5e-12 74.3 99 47.5
Ca_27018_v3 Cicer arietinum L. HOM05D007435 ORTHO05D009338 1.5e-11 73.6 52 65.4
Phvul.005G033400 Phaseolus vulgaris HOM05D007435 ORTHO05D009338 1.9e-11 73.2 102 45.1
CDE06G1029 Ceratophyllum demersum HOM05D007435 ORTHO05D009338 2.5e-11 72.8 152 38.8
arahy.Tifrunner.gnm1.ann1.KRJM02 Arachis hypogaea HOM05D007435 ORTHO05D009338 5.5e-11 71.6 101 43.6
VMungo1080G0635 Vigna mungo HOM05D007435 ORTHO05D009338 4.7e-10 68.6 104 41.3
Aqoxy1G00332 Aquilegia oxysepala HOM05D007435 ORTHO05D009338 2.3e-09 66.2 73 53.4
HPP92_025000 Vanilla planifolia HOM05D007435 ORTHO05D009338 3.0e-09 65.9 160 34.4
Haze_19805 Corylus avellana HOM05D007435 ORTHO05D009338 8.8e-09 64.3 98 45.9
Zm00001eb363190 Zea mays HOM05D007435 ORTHO05D009338 7.5e-08 61.2 110 39.1
Os01g0940600 Oryza sativa ssp. japonica HOM05D007435 ORTHO05D009338 2.8e-07 59.3 92 42.4
Glyma.04G142000 Glycine max HOM05D007435 ORTHO05D009338 1.8e-06 56.6 86 40.7


User provided reference genes

Program Settings