Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G125800 Theobroma cacao HOM05D006622 ORTHO05D007939 1.9e-156 555.8 281 100.0
Duzib093G0047 Durio zibethinus HOM05D006622 ORTHO05D007939 1.1e-132 476.9 276 85.5
COL.COLO4_20860 Corchorus olitorius HOM05D006622 ORTHO05D007939 1.4e-132 476.5 299 79.3
Gohir.D05G270800 Gossypium hirsutum HOM05D006622 ORTHO05D007939 6.2e-128 461.1 281 79.7
Gohir.A05G268900 Gossypium hirsutum HOM05D006622 ORTHO05D007939 2.4e-127 459.1 281 79.4
Gorai.009G283400 Gossypium raimondii HOM05D006622 ORTHO05D007939 2.0e-126 456.1 281 79.4
Ciclev10001495m.g Citrus clementina HOM05D006622 ORTHO05D007939 4.8e-120 434.9 276 77.5
Cfa016021 Carpinus fangiana HOM05D006622 ORTHO05D007939 3.4e-118 428.7 281 76.9
CiPaw.06G031300 Carya illinoinensis HOM05D006622 ORTHO05D007939 2.7e-115 419.1 268 76.5
Dinv27309 Davidia involucrata HOM05D006622 ORTHO05D007939 2.3e-114 416.0 271 77.1
CSS0023480 Camellia sinensis var. sinensis HOM05D006622 ORTHO05D007939 3.9e-114 415.2 271 76.4
CSS0048522 Camellia sinensis var. sinensis HOM05D006622 ORTHO05D007939 3.9e-114 415.2 271 76.4
Prupe.1G495500 Prunus persica HOM05D006622 ORTHO05D007939 3.3e-113 412.1 275 75.3
vmacro00835 Vaccinium macrocarpon HOM05D006622 ORTHO05D007939 4.3e-113 411.8 267 76.0
Potri.002G083300 Populus trichocarpa HOM05D006622 ORTHO05D007939 7.4e-113 411.0 280 73.9
TAR628G0332 Trochodendron aralioides HOM05D006622 ORTHO05D007939 7.4e-113 411.0 272 75.4
Atru.chr13.1464 Acer truncatum HOM05D006622 ORTHO05D007939 9.6e-113 410.6 263 76.4
MD15G1347700 Malus domestica HOM05D006622 ORTHO05D007939 9.6e-113 410.6 275 75.6
QL09p034510 Quercus lobata HOM05D006622 ORTHO05D007939 1.6e-112 409.8 280 72.9
RhsimUnG0092500 Rhododendron simsii HOM05D006622 ORTHO05D007939 2.1e-112 409.5 271 74.9
Sabra05G0134700 Salix brachista HOM05D006622 ORTHO05D007939 2.8e-112 409.1 283 73.1
Manes.18G077500 Manihot esculenta HOM05D006622 ORTHO05D007939 5.3e-111 404.8 279 73.5
Eucgr.F04350 Eucalyptus grandis HOM05D006622 ORTHO05D007939 6.9e-111 404.4 273 72.2
TWI60G0608 Tripterygium wilfordii HOM05D006622 ORTHO05D007939 6.9e-111 404.4 269 75.8
PGR044G1562 Punica granatum HOM05D006622 ORTHO05D007939 9.0e-111 404.1 267 74.5
Atru.chr13.1486 Acer truncatum HOM05D006622 ORTHO05D007939 1.2e-110 403.7 257 77.0
FAN15G0029 Fragaria x ananassa HOM05D006622 ORTHO05D007939 3.4e-110 402.1 270 72.6
Potri.005G178200 Populus trichocarpa HOM05D006622 ORTHO05D007939 4.5e-110 401.7 277 72.2
FvH4_2g26990 Fragaria vesca HOM05D006622 ORTHO05D007939 7.6e-110 401.0 270 73.0
FAN24G2914 Fragaria x ananassa HOM05D006622 ORTHO05D007939 7.6e-110 401.0 270 73.0
RcHm_v2.0_Chr6g0295871 Rosa chinensis HOM05D006622 ORTHO05D007939 1.0e-109 400.6 267 74.2
Actinidia29467 Actinidia chinensis HOM05D006622 ORTHO05D007939 2.9e-109 399.1 270 75.2
BcaB07g32178 Brassica carinata HOM05D006622 ORTHO05D007939 3.8e-109 398.7 265 72.1
Thhalv10008385m.g Eutrema salsugineum HOM05D006622 ORTHO05D007939 8.5e-109 397.5 279 70.3
C05p20800 Brassica napus HOM05D006622 ORTHO05D007939 1.9e-108 396.4 271 70.1
THA.LOC104800197 Tarenaya hassleriana HOM05D006622 ORTHO05D007939 1.9e-108 396.4 281 70.1
Aqoxy5G02345 Aquilegia oxysepala HOM05D006622 ORTHO05D007939 9.3e-108 394.0 278 70.1
Haze_00437 Corylus avellana HOM05D006622 ORTHO05D007939 1.6e-107 393.3 350 61.7
BolC5t30779H Brassica oleracea HOM05D006622 ORTHO05D007939 1.0e-106 390.6 271 69.4
A06p17900 Brassica napus HOM05D006622 ORTHO05D007939 1.3e-106 390.2 277 68.6
BraA06t24880Z Brassica rapa HOM05D006622 ORTHO05D007939 1.3e-106 390.2 277 68.6
AT1G21790 Arabidopsis thaliana HOM05D006622 ORTHO05D007939 3.0e-106 389.0 279 68.8
CARHR022170 Cardamine hirsuta HOM05D006622 ORTHO05D007939 3.0e-106 389.0 264 72.0
AL1G34990 Arabidopsis lyrata HOM05D006622 ORTHO05D007939 3.9e-106 388.7 264 71.2
BcaC05g26102 Brassica carinata HOM05D006622 ORTHO05D007939 3.9e-106 388.7 271 69.0
Aa31LG7G5770 Aethionema arabicum HOM05D006622 ORTHO05D007939 1.1e-105 387.1 279 68.8
Oeu040412.1 Olea europaea HOM05D006622 ORTHO05D007939 1.1e-105 387.1 265 71.7
DCAR_003552 Daucus carota HOM05D006622 ORTHO05D007939 1.5e-105 386.7 269 72.1
Carub.0001s2125 Capsella rubella HOM05D006622 ORTHO05D007939 7.4e-105 384.4 264 70.8
GSVIVG01008863001 Vitis vinifera HOM05D006622 ORTHO05D007939 4.8e-104 381.7 249 74.7
MSTRG.24172 Avicennia marina HOM05D006622 ORTHO05D007939 2.4e-103 379.4 276 70.3
Lj1g0017707 Lotus japonicus HOM05D006622 ORTHO05D007939 9.1e-103 377.5 270 70.4
Ca_16559_v3 Cicer arietinum L. HOM05D006622 ORTHO05D007939 4.5e-102 375.2 268 69.8
TPR.G21062 Trifolium pratense HOM05D006622 ORTHO05D007939 1.0e-101 374.0 260 71.5
PSO017G0487 Papaver somniferum HOM05D006622 ORTHO05D007939 1.7e-101 373.2 259 74.1
Hund26807 Selenicereus undatus HOM05D006622 ORTHO05D007939 3.8e-101 372.1 276 67.4
HanXRQChr09g0260611 Helianthus annuus HOM05D006622 ORTHO05D007939 5.0e-101 371.7 268 70.9
EL10Ac1g01019 Beta vulgaris HOM05D006622 ORTHO05D007939 8.5e-101 370.9 266 69.2
Migut.N03281 Erythranthe guttata HOM05D006622 ORTHO05D007939 8.5e-101 370.9 271 67.2
Lalb_Chr11g0065931 Lupinus albus HOM05D006622 ORTHO05D007939 8.5e-101 370.9 275 66.9
PSO478G0228 Papaver somniferum HOM05D006622 ORTHO05D007939 1.1e-100 370.5 259 74.5
MELO3C010612.2 Cucumis melo HOM05D006622 ORTHO05D007939 2.5e-100 369.4 272 69.1
CsaV3_6G034460 Cucumis sativus L. HOM05D006622 ORTHO05D007939 7.2e-100 367.9 272 69.5
SGA_v2.0_scaffold24G10458 Striga asiatica HOM05D006622 ORTHO05D007939 9.4e-100 367.5 276 67.8
Cc10_g11940 Coffea canephora HOM05D006622 ORTHO05D007939 4.6e-99 365.2 266 71.8
Medtr3g088060 Medicago truncatula HOM05D006622 ORTHO05D007939 1.4e-98 363.6 267 67.0
CAN.G69.14 Capsicum annuum HOM05D006622 ORTHO05D007939 2.3e-98 362.8 273 68.5
arahy.Tifrunner.gnm1.ann1.29UIE3 Arachis hypogaea HOM05D006622 ORTHO05D007939 1.5e-97 360.1 271 68.3
Lsat_1_v5_gn_4_135580 Lactuca sativa HOM05D006622 ORTHO05D007939 3.3e-97 359.0 253 73.5
VMungo1309G2133 Vigna mungo HOM05D006622 ORTHO05D007939 4.4e-97 358.6 262 69.8
arahy.Tifrunner.gnm1.ann1.9BP3HC Arachis hypogaea HOM05D006622 ORTHO05D007939 2.8e-96 355.9 271 67.5
ATR0584G160 Amborella trichopoda HOM05D006622 ORTHO05D007939 3.7e-96 355.5 268 65.7
ECA232G1829 Erigeron canadensis HOM05D006622 ORTHO05D007939 4.8e-96 355.1 265 69.1
Glyma.04G249500 Glycine max HOM05D006622 ORTHO05D007939 1.4e-95 353.6 264 68.6
PGSC0003DMG400044436 Solanum tuberosum HOM05D006622 ORTHO05D007939 1.4e-95 353.6 276 67.4
PGSC0003DMG402008996 Solanum tuberosum HOM05D006622 ORTHO05D007939 1.4e-95 353.6 276 67.4
Phvul.009G125300 Phaseolus vulgaris HOM05D006622 ORTHO05D007939 7.7e-94 347.8 262 67.9
Solyc01g079770.2 Solanum lycopersicum HOM05D006622 ORTHO05D007939 1.0e-93 347.4 276 66.3
Glyma.06G113400 Glycine max HOM05D006622 ORTHO05D007939 1.3e-93 347.1 263 69.2
Nitab4.5_0000630g0130 Nicotiana tabacum HOM05D006622 ORTHO05D007939 6.5e-93 344.7 276 66.7
HPP92_013761 Vanilla planifolia HOM05D006622 ORTHO05D007939 6.5e-93 344.7 267 64.0
Zm00001eb366620 Zea mays HOM05D006622 ORTHO05D007939 1.1e-92 344.0 259 68.3
Zm00001eb146520 Zea mays HOM05D006622 ORTHO05D007939 1.9e-92 343.2 261 69.0
Sopen01g031530 Solanum pennellii HOM05D006622 ORTHO05D007939 7.2e-92 341.3 276 65.6
Os01g0869600 Oryza sativa ssp. japonica HOM05D006622 ORTHO05D007939 2.7e-91 339.3 257 67.3
CANSAT35G0359 Cannabis sativa HOM05D006622 ORTHO05D007939 3.6e-91 339.0 276 68.1
CANSAT35G1811 Cannabis sativa HOM05D006622 ORTHO05D007939 1.4e-90 337.0 276 67.0
Sc15g0002770 Simmondsia chinensis HOM05D006622 ORTHO05D007939 1.3e-85 320.5 262 61.1
AUR62014332 Chenopodium quinoa HOM05D006622 ORTHO05D007939 5.3e-79 298.5 266 59.0
Cpa.g.sc64.93 Carica papaya HOM05D006622 ORTHO05D007939 1.5e-73 280.4 176 77.3
Sed0026599 Sechium edule HOM05D006622 ORTHO05D007939 4.4e-73 278.9 181 74.0
AUR62019075 Chenopodium quinoa HOM05D006622 ORTHO05D007939 2.2e-72 276.6 191 69.1
FAN20G1317 Fragaria x ananassa HOM05D006622 ORTHO05D007939 9.1e-71 271.2 179 73.2
MD08G1162300 Malus domestica HOM05D006622 ORTHO05D007939 8.0e-67 258.1 175 70.3
Oeu040413.1 Olea europaea HOM05D006622 ORTHO05D007939 1.2e-65 254.2 173 71.1
Peaxi162Scf01270g00111 Petunia axillaris HOM05D006622 ORTHO05D007939 1.8e-63 246.9 269 51.3
ClCG08G005670 Citrullus lanatus HOM05D006622 ORTHO05D007939 9.2e-63 244.6 166 74.1
Mapoly0055s0084 Marchantia polymorpha HOM05D006622 ORTHO05D007939 8.0e-59 231.5 285 44.9
Psat5g087320 Pisum sativum HOM05D006622 ORTHO05D007939 8.0e-59 231.5 182 64.3
CDE08G0135 Ceratophyllum demersum HOM05D006622 ORTHO05D007939 7.5e-57 224.9 274 47.8
Sp1g19350 Schrenkiella parvula HOM05D006622 ORTHO05D007939 2.2e-56 223.4 137 75.9
SMO351G0129 Selaginella moellendorffii HOM05D006622 ORTHO05D007939 2.5e-52 209.9 269 44.2
CDE06G0548 Ceratophyllum demersum HOM05D006622 ORTHO05D007939 3.3e-52 209.5 159 66.7
Pp3c12_11900 Physcomitrium patens HOM05D006622 ORTHO05D007939 1.4e-50 204.1 272 45.6
Nn5g28301 Nelumbo nucifera HOM05D006622 ORTHO05D007939 9.8e-49 198.0 272 45.2
AagrBONN_evm.TU.Sc2ySwM_117.1000 Anthoceros agrestis HOM05D006622 ORTHO05D007939 3.3e-44 183.0 222 45.9
Nitab4.5_0000968g0040 Nicotiana tabacum HOM05D006622 ORTHO05D007939 1.6e-43 180.6 270 43.7
PGSC0003DMG400007898 Solanum tuberosum HOM05D006622 ORTHO05D007939 1.4e-34 151.0 126 61.1
Actinidia03468 Actinidia chinensis HOM05D006622 ORTHO05D007939 6.6e-29 132.1 263 36.9
Aa31LG4G7650 Aethionema arabicum HOM05D006622 ORTHO05D007939 1.6e-27 127.5 78 74.4
Lj7C341T13 Lonicera japonica HOM05D006622 ORTHO05D007939 4.7e-27 125.9 92 65.2
CBR_g40088 Chara braunii HOM05D006622 ORTHO05D007939 7.8e-22 108.6 145 42.1
Lj7C341T14 Lonicera japonica HOM05D006622 ORTHO05D007939 6.6e-21 105.5 83 66.3
Prupe.1G512700 Prunus persica HOM05D006622 ORTHO05D007939 8.1e-19 98.6 72 66.7
Aa31LG4G7660 Aethionema arabicum HOM05D006622 ORTHO05D007939 3.8e-16 89.7 66 66.7
AagrBONN_evm.TU.Sc2ySwM_117.972 Anthoceros agrestis HOM05D006622 ORTHO05D007939 3.8e-16 89.7 173 37.0
HPP92_013753 Vanilla planifolia HOM05D006622 ORTHO05D007939 3.2e-15 86.7 70 64.3
AagrBONN_evm.TU.Sc2ySwM_117.993 Anthoceros agrestis HOM05D006622 ORTHO05D007939 1.1e-12 78.2 130 39.2
unitig_748.g7104 Utricularia gibba HOM05D006622 ORTHO05D007939 2.0e-09 67.4 71 50.7


User provided reference genes

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