Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G042800 Theobroma cacao HOM05D003931 ORTHO05D004577 4.1e-165 584.7 309 100.0
Gorai.002G087700 Gossypium raimondii HOM05D003931 ORTHO05D004577 2.3e-136 489.2 312 74.0
Gohir.A01G078700 Gossypium hirsutum HOM05D003931 ORTHO05D004577 2.0e-135 486.1 312 73.4
Gohir.D01G065800 Gossypium hirsutum HOM05D003931 ORTHO05D004577 5.8e-135 484.6 312 73.4
Atru.chr2.3378 Acer truncatum HOM05D003931 ORTHO05D004577 1.3e-118 430.3 312 65.4
Manes.15G073200 Manihot esculenta HOM05D003931 ORTHO05D004577 3.2e-117 425.6 309 66.7
TWI38G0918 Tripterygium wilfordii HOM05D003931 ORTHO05D004577 4.2e-117 425.2 302 66.2
Potri.001G424700 Populus trichocarpa HOM05D003931 ORTHO05D004577 5.6e-114 414.8 244 76.2
Hma1.2p1_1271F.1_g271720 Hydrangea macrophylla HOM05D003931 ORTHO05D004577 7.3e-114 414.5 304 63.8
Sabra11G0123500 Salix brachista HOM05D003931 ORTHO05D004577 7.3e-114 414.5 302 65.9
CiPaw.11G187800 Carya illinoinensis HOM05D003931 ORTHO05D004577 6.2e-113 411.4 315 63.2
Haze_09657 Corylus avellana HOM05D003931 ORTHO05D004577 3.1e-112 409.1 316 67.7
Cfa020372 Carpinus fangiana HOM05D003931 ORTHO05D004577 5.3e-112 408.3 322 65.8
Duzib213G0550 Durio zibethinus HOM05D003931 ORTHO05D004577 2.0e-111 406.4 234 79.5
Sabra16G0288300 Salix brachista HOM05D003931 ORTHO05D004577 5.8e-111 404.8 309 62.8
ClCG10G005490 Citrullus lanatus HOM05D003931 ORTHO05D004577 1.7e-110 403.3 240 74.6
QL08p011429 Quercus lobata HOM05D003931 ORTHO05D004577 1.7e-110 403.3 309 62.1
QL08p011634 Quercus lobata HOM05D003931 ORTHO05D004577 1.7e-110 403.3 309 62.1
QL08p011649 Quercus lobata HOM05D003931 ORTHO05D004577 1.7e-110 403.3 309 62.1
Prupe.4G210600 Prunus persica HOM05D003931 ORTHO05D004577 2.9e-110 402.5 249 73.9
MD11G1221200 Malus domestica HOM05D003931 ORTHO05D004577 4.9e-110 401.7 234 76.5
Ciclev10009005m.g Citrus clementina HOM05D003931 ORTHO05D004577 1.1e-109 400.6 232 76.3
FAN16G2486 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.1e-109 400.6 238 73.9
FvH4_3g22400 Fragaria vesca HOM05D003931 ORTHO05D004577 2.4e-109 399.4 238 72.7
FAN11G2983 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.4e-109 399.4 238 73.1
FAN21G1679 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.4e-109 399.4 238 73.1
FAN21G3611 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.4e-109 399.4 238 73.1
MD03G1205300 Malus domestica HOM05D003931 ORTHO05D004577 5.4e-109 398.3 234 75.2
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 1.6e-108 396.7 231 75.3
Glyma.18G099500 Glycine max HOM05D003931 ORTHO05D004577 2.1e-108 396.4 239 74.9
arahy.Tifrunner.gnm1.ann1.07EMGU Arachis hypogaea HOM05D003931 ORTHO05D004577 2.7e-108 396.0 237 74.3
Glyma.08G314700 Glycine max HOM05D003931 ORTHO05D004577 3.5e-108 395.6 241 73.0
RcHm_v2.0_Chr5g0039071 Rosa chinensis HOM05D003931 ORTHO05D004577 1.0e-107 394.0 238 72.7
Nn1g03571 Nelumbo nucifera HOM05D003931 ORTHO05D004577 1.8e-107 393.3 242 72.7
Sed0028072 Sechium edule HOM05D003931 ORTHO05D004577 2.3e-107 392.9 229 74.2
BcaB03g12524 Brassica carinata HOM05D003931 ORTHO05D004577 3.0e-107 392.5 234 76.1
CsaV3_3G005230 Cucumis sativus L. HOM05D003931 ORTHO05D004577 3.0e-107 392.5 315 59.7
Migut.M01779 Erythranthe guttata HOM05D003931 ORTHO05D004577 3.0e-107 392.5 242 71.5
Lsat_1_v5_gn_5_6120 Lactuca sativa HOM05D003931 ORTHO05D004577 3.9e-107 392.1 235 73.6
Oeu042929.1 Olea europaea HOM05D003931 ORTHO05D004577 5.1e-107 391.7 236 72.5
Carub.0007s1381 Capsella rubella HOM05D003931 ORTHO05D004577 1.5e-106 390.2 307 61.2
MELO3C025390.2 Cucumis melo HOM05D003931 ORTHO05D004577 2.5e-106 389.4 315 59.0
A01p18190 Brassica napus HOM05D003931 ORTHO05D004577 3.3e-106 389.0 305 63.9
BraA08t34014Z Brassica rapa HOM05D003931 ORTHO05D004577 3.3e-106 389.0 307 62.2
A08p20580 Brassica napus HOM05D003931 ORTHO05D004577 4.3e-106 388.7 307 61.9
Ca_14721_v3 Cicer arietinum L. HOM05D003931 ORTHO05D004577 7.4e-106 387.9 239 71.1
C01p23150 Brassica napus HOM05D003931 ORTHO05D004577 1.3e-105 387.1 239 74.5
Nitab4.5_0001604g0100 Nicotiana tabacum HOM05D003931 ORTHO05D004577 1.3e-105 387.1 230 73.0
BcaC07g38267 Brassica carinata HOM05D003931 ORTHO05D004577 2.1e-105 386.3 239 73.2
C08p10140 Brassica napus HOM05D003931 ORTHO05D004577 2.1e-105 386.3 239 73.2
BolC1t02250H Brassica oleracea HOM05D003931 ORTHO05D004577 2.1e-105 386.3 305 63.3
BolC8t48692H Brassica oleracea HOM05D003931 ORTHO05D004577 2.1e-105 386.3 239 73.2
BraA01t01774Z Brassica rapa HOM05D003931 ORTHO05D004577 2.1e-105 386.3 305 63.3
VMungo0540G1582 Vigna mungo HOM05D003931 ORTHO05D004577 2.1e-105 386.3 233 72.5
Eucgr.F00963 Eucalyptus grandis HOM05D003931 ORTHO05D004577 3.7e-105 385.6 239 72.0
Ah.04g165790 Amaranthus hybridus HOM05D003931 ORTHO05D004577 4.8e-105 385.2 235 71.9
Lj6g0018199 Lotus japonicus HOM05D003931 ORTHO05D004577 4.8e-105 385.2 239 73.2
Thhalv10027264m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 6.2e-105 384.8 305 61.6
Phvul.006G040800 Phaseolus vulgaris HOM05D003931 ORTHO05D004577 8.1e-105 384.4 233 71.7
Actinidia09908 Actinidia chinensis HOM05D003931 ORTHO05D004577 1.1e-104 384.0 229 73.8
Lsat_1_v5_gn_5_6180 Lactuca sativa HOM05D003931 ORTHO05D004577 1.1e-104 384.0 235 71.5
THA.LOC104809192 Tarenaya hassleriana HOM05D003931 ORTHO05D004577 1.1e-104 384.0 234 72.6
Medtr3g051220 Medicago truncatula HOM05D003931 ORTHO05D004577 1.4e-104 383.6 233 71.2
Aa31LG5G10360 Aethionema arabicum HOM05D003931 ORTHO05D004577 1.8e-104 383.3 304 60.9
AUR62015742 Chenopodium quinoa HOM05D003931 ORTHO05D004577 2.4e-104 382.9 232 72.4
AUR62020469 Chenopodium quinoa HOM05D003931 ORTHO05D004577 3.1e-104 382.5 232 72.0
TPR.G16574 Trifolium pratense HOM05D003931 ORTHO05D004577 5.3e-104 381.7 233 72.1
MSTRG.6909 Avicennia marina HOM05D003931 ORTHO05D004577 3.4e-103 379.0 234 70.1
CAN.G337.115 Capsicum annuum HOM05D003931 ORTHO05D004577 4.5e-103 378.6 240 66.7
Lalb_Chr02g0155621 Lupinus albus HOM05D003931 ORTHO05D004577 4.5e-103 378.6 244 68.9
Sc03g0008690 Simmondsia chinensis HOM05D003931 ORTHO05D004577 4.5e-103 378.6 239 67.8
Cc05_g13590 Coffea canephora HOM05D003931 ORTHO05D004577 5.8e-103 378.3 225 75.6
Aqoxy1G03269 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 1.7e-102 376.7 240 68.3
CANSAT64G1454 Cannabis sativa HOM05D003931 ORTHO05D004577 2.9e-102 375.9 235 69.8
Lj1C870G17 Lonicera japonica HOM05D003931 ORTHO05D004577 2.9e-102 375.9 233 69.5
PGR083G2742 Punica granatum HOM05D003931 ORTHO05D004577 2.9e-102 375.9 231 72.7
EL10Ac4g07844 Beta vulgaris HOM05D003931 ORTHO05D004577 4.9e-102 375.2 238 68.1
HanXRQChr05g0159031 Helianthus annuus HOM05D003931 ORTHO05D004577 6.5e-102 374.8 249 69.1
Sp7g25010 Schrenkiella parvula HOM05D003931 ORTHO05D004577 8.4e-102 374.4 312 59.0
COL.COLO4_09644 Corchorus olitorius HOM05D003931 ORTHO05D004577 1.1e-101 374.0 303 62.4
Lalb_Chr06g0171911 Lupinus albus HOM05D003931 ORTHO05D004577 2.5e-101 372.9 239 69.0
Psat5g180680 Pisum sativum HOM05D003931 ORTHO05D004577 2.5e-101 372.9 233 70.4
PGSC0003DMG400022225 Solanum tuberosum HOM05D003931 ORTHO05D004577 5.5e-101 371.7 230 68.7
TAR626G0527 Trochodendron aralioides HOM05D003931 ORTHO05D004577 7.1e-101 371.3 236 69.5
vmacro11735 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 7.1e-101 371.3 232 71.6
Sopen07g032620 Solanum pennellii HOM05D003931 ORTHO05D004577 4.6e-100 368.6 230 68.3
SGA_v2.0_scaffold172G38997 Striga asiatica HOM05D003931 ORTHO05D004577 7.9e-100 367.9 235 69.8
Aa31LG5G10380 Aethionema arabicum HOM05D003931 ORTHO05D004577 1.0e-99 367.5 238 70.2
CARHR234700 Cardamine hirsuta HOM05D003931 ORTHO05D004577 3.0e-99 365.9 228 72.4
Solyc07g064410.1 Solanum lycopersicum HOM05D003931 ORTHO05D004577 3.9e-99 365.5 230 67.4
AL7G25800 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 6.7e-99 364.8 334 56.0
DCAR_008677 Daucus carota HOM05D003931 ORTHO05D004577 3.7e-97 359.0 234 67.9
Sp7g24990 Schrenkiella parvula HOM05D003931 ORTHO05D004577 1.4e-96 357.1 234 67.1
AT4G27030 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 2.4e-96 356.3 228 71.1
unitig_62.g23279 Utricularia gibba HOM05D003931 ORTHO05D004577 4.1e-96 355.5 240 67.1
Cfa009708 Carpinus fangiana HOM05D003931 ORTHO05D004577 1.5e-95 353.6 218 71.6
Peaxi162Scf00450g00075 Petunia axillaris HOM05D003931 ORTHO05D004577 1.5e-95 353.6 216 71.8
Atru.chr2.3340 Acer truncatum HOM05D003931 ORTHO05D004577 3.4e-95 352.4 229 69.0
Haze_23062 Corylus avellana HOM05D003931 ORTHO05D004577 7.6e-95 351.3 241 65.6
ATR0752G116 Amborella trichopoda HOM05D003931 ORTHO05D004577 1.7e-94 350.1 247 64.8
Atru.chr2.3337 Acer truncatum HOM05D003931 ORTHO05D004577 2.9e-94 349.4 227 70.5
Thhalv10025879m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 2.9e-94 349.4 240 64.2
Sc03g0008680 Simmondsia chinensis HOM05D003931 ORTHO05D004577 2.1e-92 343.2 232 64.2
QL08p011463 Quercus lobata HOM05D003931 ORTHO05D004577 4.6e-92 342.0 239 63.6
CARHR049940 Cardamine hirsuta HOM05D003931 ORTHO05D004577 1.0e-91 340.9 309 52.4
PSO675G5012 Papaver somniferum HOM05D003931 ORTHO05D004577 1.0e-91 340.9 232 65.5
Nitab4.5_0004336g0020 Nicotiana tabacum HOM05D003931 ORTHO05D004577 1.8e-91 340.1 211 70.1
PSO541G1838 Papaver somniferum HOM05D003931 ORTHO05D004577 3.0e-91 339.3 233 65.2
Thhalv10026787m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 5.1e-91 338.6 234 63.7
Carub.0002s0286 Capsella rubella HOM05D003931 ORTHO05D004577 1.9e-90 336.7 235 63.4
Rhsim06G0216100 Rhododendron simsii HOM05D003931 ORTHO05D004577 3.3e-90 335.9 202 75.7
AT1G62190 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 4.8e-89 332.0 306 52.3
Lsat_1_v5_gn_5_5140 Lactuca sativa HOM05D003931 ORTHO05D004577 6.9e-88 328.2 241 61.0
Sp7g25000 Schrenkiella parvula HOM05D003931 ORTHO05D004577 9.0e-88 327.8 235 64.3
Prupe.4G210500 Prunus persica HOM05D003931 ORTHO05D004577 1.2e-87 327.4 211 69.2
AT2G22890 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 1.5e-87 327.0 228 63.2
CDE05G0277 Ceratophyllum demersum HOM05D003931 ORTHO05D007395 2.0e-87 326.6 231 61.5
C07p55050 Brassica napus HOM05D003931 ORTHO05D004577 4.5e-87 325.5 240 59.6
PGSC0003DMG400004435 Solanum tuberosum HOM05D003931 ORTHO05D004577 5.9e-87 325.1 230 62.2
AL4G12480 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 7.7e-87 324.7 224 63.8
Carub.0004s0202 Capsella rubella HOM05D003931 ORTHO05D004577 7.7e-87 324.7 234 63.7
BcaB03g12523 Brassica carinata HOM05D003931 ORTHO05D004577 2.9e-86 322.8 229 64.6
BcaC06g32716 Brassica carinata HOM05D003931 ORTHO05D004577 6.5e-86 321.6 234 60.3
AUR62015741 Chenopodium quinoa HOM05D003931 ORTHO05D004577 2.5e-85 319.7 228 59.6
A03p57020 Brassica napus HOM05D003931 ORTHO05D004577 3.2e-85 319.3 234 59.8
BolC7t46007H Brassica oleracea HOM05D003931 ORTHO05D004577 5.5e-85 318.5 237 59.1
vmacro11734 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 5.5e-85 318.5 228 59.6
BraA03t14771Z Brassica rapa HOM05D003931 ORTHO05D004577 3.6e-84 315.8 234 59.4
BraA08t34015Z Brassica rapa HOM05D003931 ORTHO05D004577 1.4e-83 313.9 229 63.8
Sc03g0008670 Simmondsia chinensis HOM05D003931 ORTHO05D004577 5.1e-83 312.0 231 57.6
BcaC07g38266 Brassica carinata HOM05D003931 ORTHO05D004577 2.0e-82 310.1 229 63.3
C08p10100 Brassica napus HOM05D003931 ORTHO05D004577 2.0e-82 310.1 229 63.3
BolC8t48689H Brassica oleracea HOM05D003931 ORTHO05D004577 2.0e-82 310.1 229 63.3
BcaC07g38264 Brassica carinata HOM05D003931 ORTHO05D004577 5.7e-82 308.5 229 62.9
Lj6g0018599 Lotus japonicus HOM05D003931 ORTHO05D004577 5.7e-82 308.5 242 55.8
A08p20590 Brassica napus HOM05D003931 ORTHO05D004577 2.8e-81 306.2 229 62.4
CSS0050113 Camellia sinensis var. sinensis HOM05D003931 ORTHO05D004577 3.8e-78 295.8 202 68.3
CANSAT11G0562 Cannabis sativa HOM05D003931 ORTHO05D004577 3.8e-78 295.8 224 60.3
Oeu062594.1 Olea europaea HOM05D003931 ORTHO05D004577 6.5e-78 295.0 228 57.5
Cpa.g.sc97.27 Carica papaya HOM05D003931 ORTHO05D004577 3.2e-77 292.7 244 57.8
BolC8t48691H Brassica oleracea HOM05D003931 ORTHO05D004577 2.0e-71 273.5 209 62.2
CANSAT11G1176 Cannabis sativa HOM05D003931 ORTHO05D004577 2.9e-70 269.6 219 55.7
SEGI_34207 Sequoiadendron giganteum HOM05D003931 ORTHO05D004577 3.2e-69 266.2 229 52.0
FAN11G0561 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.8e-67 260.4 242 53.7
Zm00001eb413170 Zea mays HOM05D003931 ORTHO05D004577 5.2e-67 258.8 247 50.2
Mapoly0034s0071 Marchantia polymorpha HOM05D003931 ORTHO05D004577 1.1e-66 257.7 228 52.2
Eucgr.L01106 Eucalyptus grandis HOM05D003931 ORTHO05D004577 2.2e-65 253.4 212 56.6
COL.COLO4_07219 Corchorus olitorius HOM05D003931 ORTHO05D004577 6.3e-65 251.9 131 87.8
Os08g0187900 Oryza sativa ssp. japonica HOM05D003931 ORTHO05D004577 6.3e-65 251.9 254 49.2
QL09p032903 Quercus lobata HOM05D003931 ORTHO05D004577 4.1e-64 249.2 163 67.5
SGA_v2.0_scaffold9G05067 Striga asiatica HOM05D003931 ORTHO05D004577 7.7e-63 245.0 238 47.9
Aqoxy1G03270 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 1.0e-62 244.6 217 51.6
AagrBONN_evm.TU.Sc2ySwM_368.1941 Anthoceros agrestis HOM05D003931 ORTHO05D004577 2.9e-62 243.0 230 50.9
Migut.H01834 Erythranthe guttata HOM05D003931 ORTHO05D004577 5.0e-62 242.3 231 49.8
SMO364G0503 Selaginella moellendorffii HOM05D003931 ORTHO05D004577 3.6e-60 236.1 229 48.0
Cfa009711 Carpinus fangiana HOM05D003931 ORTHO05D004577 1.0e-59 234.6 173 64.2
Pp3c13_12570 Physcomitrium patens HOM05D003931 ORTHO05D004577 1.0e-59 234.6 226 48.2
Migut.H01835 Erythranthe guttata HOM05D003931 ORTHO05D004577 2.6e-58 229.9 230 47.4
unitig_749.g13966 Utricularia gibba HOM05D003931 ORTHO05D004577 2.4e-56 223.4 226 46.5
SGA_v2.0_scaffold9G05070 Striga asiatica HOM05D003931 ORTHO05D004577 7.0e-56 221.9 241 44.0
Migut.H01836 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.7e-54 217.2 233 45.5
CDE05G0281 Ceratophyllum demersum HOM05D003931 ORTHO05D004577 5.5e-53 212.2 150 58.0
Haze_23061 Corylus avellana HOM05D003931 ORTHO05D004577 1.6e-52 210.7 140 67.1
FvH4_3g22391 Fragaria vesca HOM05D003931 ORTHO05D004577 2.3e-51 206.8 193 50.8
COL.COLO4_07218 Corchorus olitorius HOM05D003931 ORTHO05D004577 4.0e-51 206.1 109 86.2
Cre16.g673001 Chlamydomonas reinhardtii HOM05D003931 ORTHO05D004577 5.2e-51 205.7 245 42.9
Zm00001eb413200 Zea mays HOM05D003931 ORTHO05D004577 1.7e-49 200.7 231 45.5
MCO05G373 Micromonas commoda HOM05D003931 ORTHO05D004577 1.1e-48 198.0 241 42.3
CBR_g30523 Chara braunii HOM05D003931 ORTHO05D004577 3.5e-47 193.0 315 34.9
ECA246G1165 Erigeron canadensis HOM05D003931 ORTHO05D004577 1.6e-44 184.1 152 55.3
PRCOL_00003954 Prasinoderma coloniale HOM05D003931 ORTHO05D004577 1.2e-42 177.9 220 38.6
AL3G48190 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 3.1e-35 153.3 96 66.7
C01p23190 Brassica napus HOM05D003931 ORTHO05D004577 2.7e-31 140.2 87 70.1
C08p10120 Brassica napus HOM05D003931 ORTHO05D004577 4.4e-26 122.9 94 60.6
BcaC06g32715 Brassica carinata HOM05D003931 ORTHO05D004577 2.3e-14 84.0 49 75.5
unitig_26.g9960 Utricularia gibba HOM05D003931 ORTHO05D004577 1.5e-13 81.3 74 44.6
BcaC09g50623 Brassica carinata HOM05D003931 ORTHO05D004577 1.2e-12 78.2 95 44.2
unitig_26.g9959 Utricularia gibba HOM05D001404 ORTHO05D026306 3.9e-06 56.6 43 58.1


User provided reference genes

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