Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G026900 Theobroma cacao HOM05D000411 ORTHO05D409095 1.8e-119 432.6 211 100.0
Thecc.07G027100 Theobroma cacao HOM05D000411 ORTHO05D407520 2.2e-32 143.3 102 74.5
Duzib211G0620 Durio zibethinus HOM05D000411 ORTHO05D000310 4.7e-19 99.0 141 46.8
Gorai.001G179300 Gossypium raimondii HOM05D000411 ORTHO05D000310 3.1e-15 86.3 141 44.0
Gohir.A11G131800 Gossypium hirsutum HOM05D000411 ORTHO05D000310 4.1e-15 85.9 141 43.3
Gorai.007G147800 Gossypium raimondii HOM05D000411 ORTHO05D000310 9.1e-15 84.7 141 42.6
Duzib138G1656 Durio zibethinus HOM05D000411 ORTHO05D000310 2.0e-14 83.6 141 42.6
Gohir.D07G156301 Gossypium hirsutum HOM05D000411 ORTHO05D000310 2.0e-14 83.6 141 43.3
Gohir.A07G150000 Gossypium hirsutum HOM05D000411 ORTHO05D000310 2.6e-14 83.2 141 42.6
Duzib133G0196 Durio zibethinus HOM05D000411 ORTHO05D000310 4.5e-14 82.4 140 42.9
Gohir.D11G137700 Gossypium hirsutum HOM05D000411 ORTHO05D000310 7.7e-14 81.6 141 41.8
FvH4_2g21160 Fragaria vesca HOM05D000411 ORTHO05D000310 2.2e-13 80.1 146 37.0
FAN27G2384 Fragaria x ananassa HOM05D000411 ORTHO05D000310 3.8e-13 79.3 146 36.3
Gorai.001G254700 Gossypium raimondii HOM05D000411 ORTHO05D000310 5.0e-13 79.0 141 41.1
Thecc.01G255000 Theobroma cacao HOM05D000411 ORTHO05D000310 9.4e-12 74.7 54 85.2
TWI75G1326 Tripterygium wilfordii HOM05D000411 ORTHO05D000310 9.4e-12 74.7 133 40.6
Gohir.D07G220400 Gossypium hirsutum HOM05D000411 ORTHO05D000310 2.1e-11 73.6 141 39.7
Gohir.D08G209300 Gossypium hirsutum HOM05D000411 ORTHO05D000310 2.7e-11 73.2 134 38.8
Potri.002G036000 Populus trichocarpa HOM05D000411 ORTHO05D000310 2.7e-11 73.2 133 37.6
Gohir.A07G213900 Gossypium hirsutum HOM05D000411 ORTHO05D000310 4.7e-11 72.4 141 39.0
Ciclev10020024m.g Citrus clementina HOM05D000411 ORTHO05D000310 8.0e-11 71.6 140 37.1
Sabra02G0029200 Salix brachista HOM05D000411 ORTHO05D000310 8.0e-11 71.6 133 36.1
Thecc.05G187800 Theobroma cacao HOM05D000294 ORTHO05D000177 1.4e-10 70.9 65 47.7
Actinidia07309 Actinidia chinensis HOM05D000411 ORTHO05D000310 2.3e-10 70.1 140 33.6
Gohir.A08G191400 Gossypium hirsutum HOM05D000411 ORTHO05D000310 5.2e-10 68.9 133 37.6
COL.COLO4_04017 Corchorus olitorius HOM05D000411 ORTHO05D000310 8.8e-10 68.2 50 78.0
MD10G1180400 Malus domestica HOM05D000411 ORTHO05D000310 8.8e-10 68.2 33 84.8
Lj1g0022446 Lotus japonicus HOM05D000411 ORTHO05D000310 1.2e-09 67.8 152 35.5
Gorai.004G221700 Gossypium raimondii HOM05D000411 ORTHO05D000310 1.5e-09 67.4 134 36.6
MD05G1193800 Malus domestica HOM05D000411 ORTHO05D000310 1.5e-09 67.4 33 81.8
CANSAT01G1222 Cannabis sativa HOM05D000411 ORTHO05D000310 2.0e-09 67.0 140 35.7
Prupe.8G220400 Prunus persica HOM05D000411 ORTHO05D000310 2.0e-09 67.0 33 81.8
Aqoxy5G00205 Aquilegia oxysepala HOM05D000411 ORTHO05D000310 2.6e-09 66.6 139 33.8
AUR62015555 Chenopodium quinoa HOM05D000411 ORTHO05D000310 2.6e-09 66.6 144 36.1
FAN15G1371 Fragaria x ananassa HOM05D000411 ORTHO05D000310 3.4e-09 66.2 86 45.3
FAN20G2265 Fragaria x ananassa HOM05D000411 ORTHO05D000310 3.4e-09 66.2 86 46.5
VMungo1383G2580 Vigna mungo HOM05D000411 ORTHO05D000310 4.4e-09 65.9 160 34.4
Manes.12G034100 Manihot esculenta HOM05D000411 ORTHO05D000310 5.7e-09 65.5 136 36.0
RcHm_v2.0_Chr6g0287641 Rosa chinensis HOM05D000411 ORTHO05D000310 5.7e-09 65.5 74 48.6
Hma1.2p1_0112F.1_g054150 Hydrangea macrophylla HOM05D000411 ORTHO05D000310 7.5e-09 65.1 147 34.7
FAN24G0437 Fragaria x ananassa HOM05D000411 ORTHO05D000310 9.8e-09 64.7 86 44.2
TPR.G9207 Trifolium pratense HOM05D000411 ORTHO05D000310 1.3e-08 64.3 157 34.4
Lj3C692G12 Lonicera japonica HOM05D000411 ORTHO05D000310 1.7e-08 63.9 131 35.9
TAR636G2009 Trochodendron aralioides HOM05D000411 ORTHO05D000310 1.7e-08 63.9 138 34.1
Cpa.g.sc165.23 Carica papaya HOM05D000411 ORTHO05D000310 2.8e-08 63.2 137 35.0
AUR62002152 Chenopodium quinoa HOM05D000411 ORTHO05D000310 2.8e-08 63.2 136 36.8
Glyma.19G166100 Glycine max HOM05D000411 ORTHO05D000310 2.8e-08 63.2 161 34.2
Eucgr.H03031 Eucalyptus grandis HOM05D000411 ORTHO05D000310 3.7e-08 62.8 151 33.8
Glyma.03G164700 Glycine max HOM05D000411 ORTHO05D000310 3.7e-08 62.8 161 34.2
Phvul.001G162300 Phaseolus vulgaris HOM05D000411 ORTHO05D000310 3.7e-08 62.8 141 35.5
Ca_08685_v3 Cicer arietinum L. HOM05D000411 ORTHO05D000310 4.8e-08 62.4 33 78.8
Peaxi162Scf00041g02617 Petunia axillaris HOM05D000411 ORTHO05D000310 4.8e-08 62.4 140 35.7
MELO3C012857.2 Cucumis melo HOM05D000411 ORTHO05D000310 6.3e-08 62.0 133 37.6
CsaV3_3G022090 Cucumis sativus L. HOM05D000411 ORTHO05D000310 1.1e-07 61.2 86 41.9
Oeu033804.2 Olea europaea HOM05D000411 ORTHO05D000310 1.1e-07 61.2 133 35.3
PGR142G2018 Punica granatum HOM05D000411 ORTHO05D000310 1.1e-07 61.2 135 34.1
unitig_899.g15233 Utricularia gibba HOM05D000411 ORTHO05D000310 1.1e-07 61.2 98 38.8
Actinidia09532 Actinidia chinensis HOM05D000411 ORTHO05D000310 1.4e-07 60.8 135 34.8
DCAR_002315 Daucus carota HOM05D000411 ORTHO05D000310 1.4e-07 60.8 142 36.6
arahy.Tifrunner.gnm1.ann1.2G4T7X Arachis hypogaea HOM05D000411 ORTHO05D000310 1.8e-07 60.5 145 33.1
arahy.Tifrunner.gnm1.ann1.ND79ZZ Arachis hypogaea HOM05D000411 ORTHO05D000310 1.8e-07 60.5 145 33.1
Cfa022944 Carpinus fangiana HOM05D000411 ORTHO05D000310 1.8e-07 60.5 141 34.8
Peaxi162Scf00013g00122 Petunia axillaris HOM05D000411 ORTHO05D000310 2.4e-07 60.1 33 75.8
Psat6g062400 Pisum sativum HOM05D000411 ORTHO05D000310 2.4e-07 60.1 33 78.8
arahy.Tifrunner.gnm1.ann1.TB2RSK Arachis hypogaea HOM05D000411 ORTHO05D000310 3.1e-07 59.7 142 32.4
CAN.G771.33 Capsicum annuum HOM05D000411 ORTHO05D000310 3.1e-07 59.7 33 75.8
Psat3g056280 Pisum sativum HOM05D000411 ORTHO05D000310 3.1e-07 59.7 33 72.7
Prupe.1G040700 Prunus persica HOM05D000411 ORTHO05D000310 3.1e-07 59.7 140 34.3
Solyc06g083830.4 Solanum lycopersicum HOM05D000411 ORTHO05D000310 3.1e-07 59.7 33 75.8
Sopen06g035240 Solanum pennellii HOM05D000411 ORTHO05D000310 3.1e-07 59.7 33 75.8
PGSC0003DMG400020075 Solanum tuberosum HOM05D000411 ORTHO05D000310 3.1e-07 59.7 33 75.8
TWI12G1199 Tripterygium wilfordii HOM05D000411 ORTHO05D000310 3.1e-07 59.7 137 34.3
TAR362G0015 Trochodendron aralioides HOM05D000411 ORTHO05D000310 3.1e-07 59.7 139 33.1
GSVIVG01028363001 Vitis vinifera HOM05D000411 ORTHO05D000310 3.1e-07 59.7 89 42.7
CiPaw.02G110900 Carya illinoinensis HOM05D000411 ORTHO05D000310 4.1e-07 59.3 137 33.6
CSS0005664 Camellia sinensis var. sinensis HOM05D000411 ORTHO05D000310 5.4e-07 58.9 72 45.8
Hund03050 Selenicereus undatus HOM05D000411 ORTHO05D000310 5.4e-07 58.9 140 37.9
Lj5g0008920 Lotus japonicus HOM05D000411 ORTHO05D000310 7.0e-07 58.5 33 72.7
Lalb_Chr06g0170571 Lupinus albus HOM05D000411 ORTHO05D000310 7.0e-07 58.5 33 72.7
Manes.13G036000 Manihot esculenta HOM05D000411 ORTHO05D000310 7.0e-07 58.5 136 33.1
Nitab4.5_0000044g0430 Nicotiana tabacum HOM05D000411 ORTHO05D000310 7.0e-07 58.5 32 75.0
unitig_578.g16427 Utricularia gibba HOM05D000411 ORTHO05D000310 7.0e-07 58.5 77 49.4
CSS0004059 Camellia sinensis var. sinensis HOM05D000411 ORTHO05D000310 9.1e-07 58.2 48 60.4
ClCG07G001180 Citrullus lanatus HOM05D000411 ORTHO05D000310 9.1e-07 58.2 74 43.2
ECA240G3699 Erigeron canadensis HOM05D000411 ORTHO05D000310 9.1e-07 58.2 146 32.9
Medtr7g097160 Medicago truncatula HOM05D000411 ORTHO05D000310 9.1e-07 58.2 152 31.6
Nitab4.5_0000778g0040 Nicotiana tabacum HOM05D000411 ORTHO05D000310 9.1e-07 58.2 141 34.0
Nitab4.5_0000917g0120 Nicotiana tabacum HOM05D000411 ORTHO05D000310 9.1e-07 58.2 33 75.8
Nitab4.5_0001919g0140 Nicotiana tabacum HOM05D000411 ORTHO05D000310 9.1e-07 58.2 33 75.8
QL09p039737 Quercus lobata HOM05D000411 ORTHO05D000310 9.1e-07 58.2 134 36.6
Lalb_Chr01g0019601 Lupinus albus HOM05D000411 ORTHO05D000310 1.2e-06 57.8 141 33.3
Medtr1g069720 Medicago truncatula HOM05D000411 ORTHO05D000310 1.2e-06 57.8 33 75.8
THA.LOC104808634 Tarenaya hassleriana HOM05D000411 ORTHO05D000310 1.2e-06 57.8 135 34.8
unitig_8.g4705 Utricularia gibba HOM05D000411 ORTHO05D000310 1.2e-06 57.8 77 46.8
Atru.chr5.1736 Acer truncatum HOM05D000411 ORTHO05D000310 1.6e-06 57.4 32 75.0
COL.COLO4_15890 Corchorus olitorius HOM05D000411 ORTHO05D000310 1.6e-06 57.4 142 30.3
Glyma.10G038600 Glycine max HOM05D000411 ORTHO05D000310 1.6e-06 57.4 33 69.7
Glyma.13G125000 Glycine max HOM05D000411 ORTHO05D000310 1.6e-06 57.4 33 69.7
Gohir.D02G046000 Gossypium hirsutum HOM05D000411 ORTHO05D000310 1.6e-06 57.4 146 30.8
CiPaw.03G266800 Carya illinoinensis HOM05D000411 ORTHO05D000310 2.0e-06 57.0 148 31.8
Oeu035735.1 Olea europaea HOM05D000411 ORTHO05D000310 2.0e-06 57.0 46 63.0
EL10Ac3g04992 Beta vulgaris HOM05D000411 ORTHO05D000310 2.7e-06 56.6 137 35.0
Potri.005G226900 Populus trichocarpa HOM05D000411 ORTHO05D000310 2.7e-06 56.6 32 75.0
Solyc09g090250.4 Solanum lycopersicum HOM05D000411 ORTHO05D000310 2.7e-06 56.6 141 34.0
Sopen09g033150 Solanum pennellii HOM05D000411 ORTHO05D000310 2.7e-06 56.6 141 34.0
PGSC0003DMG400016294 Solanum tuberosum HOM05D000411 ORTHO05D000310 2.7e-06 56.6 148 32.4
vmacro02678 Vaccinium macrocarpon HOM05D000411 ORTHO05D000310 2.7e-06 56.6 61 50.8
arahy.Tifrunner.gnm1.ann1.J2ZA2N Arachis hypogaea HOM05D000411 ORTHO05D000310 3.5e-06 56.2 134 32.8
CANSAT78G1188 Cannabis sativa HOM05D000411 ORTHO05D000310 3.5e-06 56.2 32 71.9
Lalb_Chr02g0152611 Lupinus albus HOM05D000411 ORTHO05D000310 3.5e-06 56.2 33 69.7
Sopen06g003170 Solanum pennellii HOM05D000411 ORTHO05D000310 3.5e-06 56.2 33 72.7
PGSC0003DMG402025508 Solanum tuberosum HOM05D000411 ORTHO05D000310 3.5e-06 56.2 33 72.7
Actinidia40045 Actinidia chinensis HOM05D000411 ORTHO05D000310 4.5e-06 55.8 32 68.8
CAN.G1070.7 Capsicum annuum HOM05D000411 ORTHO05D000310 4.5e-06 55.8 145 32.4
DCAR_018498 Daucus carota HOM05D000411 ORTHO05D000310 4.5e-06 55.8 133 35.3
Dinv22389 Davidia involucrata HOM05D000411 ORTHO05D000310 4.5e-06 55.8 31 74.2
Gorai.005G050700 Gossypium raimondii HOM05D000411 ORTHO05D000310 4.5e-06 55.8 138 31.9
Medtr1g075870 Medicago truncatula HOM05D000411 ORTHO05D000310 4.5e-06 55.8 148 29.1
Nitab4.5_0005593g0020 Nicotiana tabacum HOM05D000411 ORTHO05D000310 4.5e-06 55.8 149 30.2
Cc01_g18130 Coffea canephora HOM05D000411 ORTHO05D000310 5.9e-06 55.5 82 45.1
Duzib151G0021 Durio zibethinus HOM05D000411 ORTHO05D000310 5.9e-06 55.5 141 31.9
Migut.D00445 Erythranthe guttata HOM05D000411 ORTHO05D000310 5.9e-06 55.5 134 32.1
Lj1A69T72 Lonicera japonica HOM05D000411 ORTHO05D000310 5.9e-06 55.5 138 30.4
Nitab4.5_0006655g0050 Nicotiana tabacum HOM05D000411 ORTHO05D000310 5.9e-06 55.5 33 72.7
Sabra05G0175100 Salix brachista HOM05D000411 ORTHO05D000310 5.9e-06 55.5 32 75.0
Sed0010790 Sechium edule HOM05D000411 ORTHO05D000310 5.9e-06 55.5 33 69.7
GSVIVG01027835001 Vitis vinifera HOM05D000411 ORTHO05D000310 5.9e-06 55.5 32 75.0
CAN.G1634.13 Capsicum annuum HOM05D000411 ORTHO05D000310 7.7e-06 55.1 140 33.6
CAN.G941.14 Capsicum annuum HOM05D000411 ORTHO05D000310 7.7e-06 55.1 87 41.4
Migut.D00444 Erythranthe guttata HOM05D000411 ORTHO05D000310 7.7e-06 55.1 148 30.4
MBI10_g13806_MAGBIO Magnolia biondii HOM05D000411 ORTHO05D000310 7.7e-06 55.1 32 68.8
Oeu003264.2 Olea europaea HOM05D000411 ORTHO05D000310 7.7e-06 55.1 46 60.9
Peaxi162Scf00987g00418 Petunia axillaris HOM05D000411 ORTHO05D000310 7.7e-06 55.1 87 39.1
Sc20g0000620 Simmondsia chinensis HOM05D000411 ORTHO05D000310 7.7e-06 55.1 149 34.2
Solyc06g008320.4 Solanum lycopersicum HOM05D000411 ORTHO05D000310 7.7e-06 55.1 146 32.2
VMungo0720G0132 Vigna mungo HOM05D000411 ORTHO05D000310 7.7e-06 55.1 33 66.7


User provided reference genes

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