Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G195800 Theobroma cacao HOM05D004792 ORTHO05D005789 1.5e-54 216.5 153 100.0
Gohir.A05G163900 Gossypium hirsutum HOM05D004792 ORTHO05D005789 1.5e-38 163.3 159 63.5
Gorai.009G171900 Gossypium raimondii HOM05D004792 ORTHO05D005789 4.7e-37 158.3 159 70.4
Gohir.D05G166800 Gossypium hirsutum HOM05D004792 ORTHO05D005789 4.4e-35 151.8 159 67.9
Duzib235G1303 Durio zibethinus HOM05D004792 ORTHO05D005789 1.0e-31 140.6 162 70.4
Gohir.A06G123900 Gossypium hirsutum HOM05D004792 ORTHO05D005789 8.6e-31 137.5 153 59.5
CiPaw.09G160100 Carya illinoinensis HOM05D004792 ORTHO05D005789 1.9e-30 136.3 155 66.5
Gorai.010G150300 Gossypium raimondii HOM05D004792 ORTHO05D005789 3.3e-30 135.6 155 57.4
TAR626G0583 Trochodendron aralioides HOM05D004792 ORTHO05D005789 1.2e-29 133.7 156 67.3
Gohir.D06G128800 Gossypium hirsutum HOM05D004792 ORTHO05D005789 4.0e-28 128.6 155 56.8
TWI63G0005 Tripterygium wilfordii HOM05D004792 ORTHO05D005789 2.0e-27 126.3 154 57.8
CiPaw.10G120700 Carya illinoinensis HOM05D004792 ORTHO05D005789 3.4e-27 125.6 156 57.1
COL.COLO4_31550 Corchorus olitorius HOM05D004792 ORTHO05D005789 7.5e-27 124.4 162 74.1
Cfa000375 Carpinus fangiana HOM05D004792 ORTHO05D005789 2.2e-26 122.9 153 64.7
TWI38G1643 Tripterygium wilfordii HOM05D004792 ORTHO05D005789 1.4e-25 120.2 154 63.6
TAR627G0338 Trochodendron aralioides HOM05D004792 ORTHO05D005789 1.9e-25 119.8 147 59.9
Carub.0002s0390 Capsella rubella HOM05D004792 ORTHO05D005789 3.2e-25 119.0 161 55.9
Nn1g06696 Nelumbo nucifera HOM05D004792 ORTHO05D005789 4.1e-25 118.6 148 62.2
BcaC04g22318 Brassica carinata HOM05D004792 ORTHO05D005789 1.6e-24 116.7 158 55.7
C09p20730 Brassica napus HOM05D004792 ORTHO05D005789 1.6e-24 116.7 158 55.7
BolC9t54970H Brassica oleracea HOM05D004792 ORTHO05D005789 1.6e-24 116.7 158 55.7
Lj1P1211T35 Lonicera japonica HOM05D004792 ORTHO05D005789 2.0e-24 116.3 153 67.3
Sabra11G0031300 Salix brachista HOM05D004792 ORTHO05D005789 2.0e-24 116.3 151 51.7
Sc05g0007980 Simmondsia chinensis HOM05D004792 ORTHO05D005789 2.0e-24 116.3 86 72.1
Cpa.g.sc27.101 Carica papaya HOM05D004792 ORTHO05D005789 2.7e-24 115.9 155 53.5
Hma1.2p1_0144F.1_g065030 Hydrangea macrophylla HOM05D004792 ORTHO05D005789 2.7e-24 115.9 153 51.6
A09p16820 Brassica napus HOM05D004792 ORTHO05D005789 4.6e-24 115.2 159 54.7
BraA09t37319Z Brassica rapa HOM05D004792 ORTHO05D005789 4.6e-24 115.2 159 54.7
MELO3C007319.2 Cucumis melo HOM05D004792 ORTHO05D005789 6.0e-24 114.8 86 80.2
TWI38G1637 Tripterygium wilfordii HOM05D004792 ORTHO05D005789 7.8e-24 114.4 154 61.7
BcaB07g31269 Brassica carinata HOM05D004792 ORTHO05D005789 1.3e-23 113.6 159 56.0
CANSAT56G3746 Cannabis sativa HOM05D004792 ORTHO05D005789 1.3e-23 113.6 158 52.5
Haze_06550 Corylus avellana HOM05D004792 ORTHO05D005789 1.7e-23 113.2 154 63.6
ClCG01G022580 Citrullus lanatus HOM05D004792 ORTHO05D005789 2.3e-23 112.8 86 74.4
PGR042G0729 Punica granatum HOM05D004792 ORTHO05D005789 2.3e-23 112.8 63 87.3
Potri.011G045000 Populus trichocarpa HOM05D004792 ORTHO05D005789 3.0e-23 112.5 154 54.5
PSO541G1127 Papaver somniferum HOM05D004792 ORTHO05D005789 3.9e-23 112.1 84 83.3
PSO675G5172 Papaver somniferum HOM05D004792 ORTHO05D005789 3.9e-23 112.1 84 83.3
Manes.16G022700 Manihot esculenta HOM05D004792 ORTHO05D005789 5.0e-23 111.7 62 90.3
Potri.004G036500 Populus trichocarpa HOM05D004792 ORTHO05D005789 8.6e-23 110.9 147 57.1
Aa31LG2G9370 Aethionema arabicum HOM05D004792 ORTHO05D005789 1.9e-22 109.8 85 82.4
Ah.09g235930 Amaranthus hybridus HOM05D004792 ORTHO05D005789 1.9e-22 109.8 80 77.5
MBI02_g29949_MAGBIO Magnolia biondii HOM05D004792 ORTHO05D005789 1.9e-22 109.8 153 51.0
Nitab4.5_0003223g0020 Nicotiana tabacum HOM05D004792 ORTHO05D005789 1.9e-22 109.8 80 81.2
Actinidia01923 Actinidia chinensis HOM05D001100 ORTHO05D001503 2.5e-22 109.4 63 84.1
Medtr2g012520 Medicago truncatula HOM05D004792 ORTHO05D005789 2.5e-22 109.4 64 84.4
Atru.chr10.1978 Acer truncatum HOM05D004792 ORTHO05D005789 3.3e-22 109.0 64 85.9
Dinv39793 Davidia involucrata HOM05D004792 ORTHO05D005789 4.3e-22 108.6 62 74.2
Glyma.13G244800 Glycine max HOM05D004792 ORTHO05D005789 4.3e-22 108.6 62 85.5
VMungo0540G0301 Vigna mungo HOM05D004792 ORTHO05D005789 4.3e-22 108.6 62 87.1
arahy.Tifrunner.gnm1.ann1.NPL2R3 Arachis hypogaea HOM05D004792 ORTHO05D005789 5.6e-22 108.2 63 79.4
Sed0027560 Sechium edule HOM05D004792 ORTHO05D005789 5.6e-22 108.2 86 77.9
AL7G32380 Arabidopsis lyrata HOM05D004792 ORTHO05D005789 9.5e-22 107.5 63 81.0
Carub.0007s1976 Capsella rubella HOM05D004792 ORTHO05D005789 9.5e-22 107.5 64 81.2
Ciclev10017067m.g Citrus clementina HOM05D004792 ORTHO05D005789 9.5e-22 107.5 159 54.7
Actinidia05593 Actinidia chinensis HOM05D004792 ORTHO05D005789 1.2e-21 107.1 86 69.8
BcaC06g30668 Brassica carinata HOM05D004792 ORTHO05D005789 1.2e-21 107.1 63 82.5
Phvul.006G190300 Phaseolus vulgaris HOM05D004792 ORTHO05D005789 1.2e-21 107.1 61 86.9
EL10Ac8g20634 Beta vulgaris HOM05D004792 ORTHO05D005789 1.6e-21 106.7 64 84.4
Nitab4.5_0006260g0010 Nicotiana tabacum HOM05D004792 ORTHO05D005789 1.6e-21 106.7 80 81.2
QL05p038407 Quercus lobata HOM05D004792 ORTHO05D005789 1.6e-21 106.7 162 61.1
Aqoxy1G02657 Aquilegia oxysepala HOM05D004792 ORTHO05D005789 2.1e-21 106.3 62 74.2
THA.LOC104812802 Tarenaya hassleriana HOM05D004792 ORTHO05D005789 2.1e-21 106.3 84 81.0
ATR0693G452 Amborella trichopoda HOM05D004792 ORTHO05D005789 3.6e-21 105.5 64 78.1
BcaNung00848 Brassica carinata HOM05D004792 ORTHO05D005789 3.6e-21 105.5 86 76.7
A03p52820 Brassica napus HOM05D004792 ORTHO05D005789 3.6e-21 105.5 86 76.7
C07p51260 Brassica napus HOM05D004792 ORTHO05D005789 3.6e-21 105.5 86 76.7
BolC7t45626H Brassica oleracea HOM05D004792 ORTHO05D005789 3.6e-21 105.5 86 76.7
Glyma.15G068900 Glycine max HOM05D004792 ORTHO05D005789 3.6e-21 105.5 157 52.2
AT4G21620 Arabidopsis thaliana HOM05D004792 ORTHO05D005789 4.7e-21 105.1 63 81.0
Hma1.2p1_1363F.1_g278365 Hydrangea macrophylla HOM05D004792 ORTHO05D005789 4.7e-21 105.1 62 88.7
TPR.G36753 Trifolium pratense HOM05D004792 ORTHO05D005789 6.2e-21 104.8 63 81.0
CARHR228340 Cardamine hirsuta HOM05D004792 ORTHO05D005789 8.1e-21 104.4 63 81.0
Thhalv10026556m.g Eutrema salsugineum HOM05D004792 ORTHO05D005789 8.1e-21 104.4 61 82.0
arahy.Tifrunner.gnm1.ann1.1RAI3Q Arachis hypogaea HOM05D004792 ORTHO05D005789 1.1e-20 104.0 63 68.3
CsaV3_6G049770 Cucumis sativus L. HOM05D004792 ORTHO05D005789 1.1e-20 104.0 64 79.7
Lj6g0023604 Lotus japonicus HOM05D004792 ORTHO05D005789 1.4e-20 103.6 64 78.1
TPR.G32413 Trifolium pratense HOM05D004792 ORTHO05D005789 1.4e-20 103.6 64 78.1
TAR624G0278 Trochodendron aralioides HOM05D004792 ORTHO05D005789 1.4e-20 103.6 160 46.2
Cc02_g12670 Coffea canephora HOM05D004792 ORTHO05D005789 1.8e-20 103.2 150 49.3
THA.LOC104819068 Tarenaya hassleriana HOM05D004792 ORTHO05D005789 1.8e-20 103.2 64 78.1
Peaxi162Scf00031g00071 Petunia axillaris HOM05D004792 ORTHO05D005789 2.3e-20 102.8 80 73.8
Prupe.4G039400 Prunus persica HOM05D004792 ORTHO05D005789 3.1e-20 102.4 63 79.4
HanXRQChr04g0125741 Helianthus annuus HOM05D004792 ORTHO05D005789 4.0e-20 102.1 87 77.0
Medtr4g090520 Medicago truncatula HOM05D004792 ORTHO05D005789 5.2e-20 101.7 90 73.3
BcaB03g11686 Brassica carinata HOM05D004792 ORTHO05D005789 6.8e-20 101.3 86 74.4
BcaC01g00688 Brassica carinata HOM05D004792 ORTHO05D005789 6.8e-20 101.3 86 74.4
A08p15060 Brassica napus HOM05D004792 ORTHO05D005789 6.8e-20 101.3 86 74.4
C03p83150 Brassica napus HOM05D004792 ORTHO05D005789 6.8e-20 101.3 86 74.4
BolC3t20598H Brassica oleracea HOM05D004792 ORTHO05D005789 6.8e-20 101.3 86 74.4
BraA03t14358Z Brassica rapa HOM05D004792 ORTHO05D005789 6.8e-20 101.3 86 72.1
BraA08t33487Z Brassica rapa HOM05D004792 ORTHO05D005789 6.8e-20 101.3 86 74.4
Aa31LG6G3620 Aethionema arabicum HOM05D004792 ORTHO05D005789 8.9e-20 100.9 64 81.2
Oeu026010.1 Olea europaea HOM05D004792 ORTHO05D005789 8.9e-20 100.9 149 63.8
RcHm_v2.0_Chr5g0006831 Rosa chinensis HOM05D004792 ORTHO05D005789 8.9e-20 100.9 154 60.4
Ca_00276_v3 Cicer arietinum L. HOM05D004792 ORTHO05D005789 1.2e-19 100.5 64 79.7
Psat1g207640 Pisum sativum HOM05D004792 ORTHO05D005789 1.5e-19 100.1 64 81.2
CAN.G132.12 Capsicum annuum HOM05D004792 ORTHO05D005789 2.6e-19 99.4 63 81.0
vmacro22273 Vaccinium macrocarpon HOM05D004792 ORTHO05D005789 2.6e-19 99.4 86 66.3
Migut.M01156 Erythranthe guttata HOM05D004792 ORTHO05D005789 3.4e-19 99.0 64 78.1
MD05G1323200 Malus domestica HOM05D004792 ORTHO05D005789 3.4e-19 99.0 153 60.8
Nitab4.5_0003114g0080 Nicotiana tabacum HOM05D004792 ORTHO05D005789 3.4e-19 99.0 86 75.6
GSVIVG01034659001 Vitis vinifera HOM05D004792 ORTHO05D005789 4.4e-19 98.6 64 67.2
CDE05G1692 Ceratophyllum demersum HOM05D004792 ORTHO05D000003 5.8e-19 98.2 85 70.6
Lsat_1_v5_gn_7_19840 Lactuca sativa HOM05D004792 ORTHO05D005789 7.5e-19 97.8 149 53.0
MD10G1301000 Malus domestica HOM05D004792 ORTHO05D005789 7.5e-19 97.8 156 56.4
ECA236G3117 Erigeron canadensis HOM05D004792 ORTHO05D005789 1.3e-18 97.1 86 70.9
Nn1g03946 Nelumbo nucifera HOM05D004792 ORTHO05D005789 3.7e-18 95.5 158 48.7
Oeu005073.1 Olea europaea HOM05D004792 ORTHO05D005789 8.3e-18 94.4 153 52.3
Sopen02g023670 Solanum pennellii HOM05D004792 ORTHO05D005789 8.3e-18 94.4 80 65.0
Os03g0676300 Oryza sativa ssp. japonica HOM05D004792 ORTHO05D005789 1.1e-17 94.0 63 73.0
CAN.G1705.1 Capsicum annuum HOM05D004792 ORTHO05D005789 1.4e-17 93.6 61 68.9
Sed0018891 Sechium edule HOM05D004792 ORTHO05D005789 3.2e-17 92.4 86 68.6
FAN25G3432 Fragaria x ananassa HOM05D004792 ORTHO05D005789 7.1e-17 91.3 154 59.7
PGSC0003DMG400022371 Solanum tuberosum HOM05D004792 ORTHO05D005789 7.1e-17 91.3 64 57.8
HPP92_018770 Vanilla planifolia HOM05D004792 ORTHO05D005789 7.1e-17 91.3 62 74.2
Solyc02g078850.1 Solanum lycopersicum HOM05D004792 ORTHO05D005789 1.6e-16 90.1 153 43.8
Solyc10g009190.1 Solanum lycopersicum HOM05D004792 ORTHO05D005789 3.5e-16 89.0 78 71.8
Sopen10g004980 Solanum pennellii HOM05D004792 ORTHO05D005789 3.5e-16 89.0 78 71.8
FvH4_3g04450 Fragaria vesca HOM05D004792 ORTHO05D005789 4.6e-16 88.6 61 78.7
FAN11G1697 Fragaria x ananassa HOM05D004792 ORTHO05D005789 4.6e-16 88.6 61 78.7
Zm00001eb217390 Zea mays HOM05D004792 ORTHO05D005789 4.6e-16 88.6 63 66.7
Sabra04G0022200 Salix brachista HOM05D004792 ORTHO05D005789 7.8e-16 87.8 147 51.0
SalBow8G4104 Salvia bowleyana HOM05D004792 ORTHO05D005789 1.0e-15 87.4 84 70.2
DCAR_008063 Daucus carota HOM05D004792 ORTHO05D005789 1.3e-15 87.0 58 74.1
FAN21G2112 Fragaria x ananassa HOM05D004792 ORTHO05D005789 3.9e-15 85.5 157 64.3
Nitab4.5_0006694g0040 Nicotiana tabacum HOM05D004792 ORTHO05D005789 3.9e-15 85.5 75 76.0
CARHR051360 Cardamine hirsuta HOM05D004792 ORTHO05D005789 5.1e-15 85.1 60 66.7
Nn025s41563 Nelumbo nucifera HOM05D004792 ORTHO05D005789 2.5e-14 82.8 55 61.8
CDE05G0177 Ceratophyllum demersum HOM05D000873 ORTHO05D002948 5.6e-14 81.6 63 65.1
AT1G61255 Arabidopsis thaliana HOM05D004792 ORTHO05D005789 9.5e-14 80.9 159 42.1
FAN16G0443 Fragaria x ananassa HOM05D004792 ORTHO05D005789 1.2e-13 80.5 159 63.5
SEGI_10462 Sequoiadendron giganteum HOM05D004792 ORTHO05D005789 1.6e-13 80.1 88 58.0
SGA_v2.0_scaffold100G29666 Striga asiatica HOM05D004792 ORTHO05D005789 1.6e-13 80.1 79 57.0
CARHR051350 Cardamine hirsuta HOM05D004792 ORTHO05D005789 2.1e-13 79.7 163 41.7
Oeu026227.1 Olea europaea HOM05D004792 ORTHO05D005789 2.1e-13 79.7 86 65.1
PGSC0003DMG400010821 Solanum tuberosum HOM05D004792 ORTHO05D005789 2.1e-13 79.7 61 67.2
CDE05G2245 Ceratophyllum demersum HOM05D004792 ORTHO05D005789 2.8e-13 79.3 63 57.1
Os12g0634700 Oryza sativa ssp. japonica HOM05D004792 ORTHO05D005789 3.6e-13 79.0 64 54.7
Zm00001eb032860 Zea mays HOM05D004792 ORTHO05D005789 6.2e-13 78.2 63 61.9
unitig_26.g9746 Utricularia gibba HOM05D004792 ORTHO05D005789 2.3e-12 76.3 59 54.2
AL2G15070 Arabidopsis lyrata HOM05D004792 ORTHO05D005789 4.0e-12 75.5 158 34.8
CDE11G0417 Ceratophyllum demersum HOM05D004792 ORTHO05D005789 2.0e-11 73.2 57 64.9
Thhalv10022963m.g Eutrema salsugineum HOM05D010802 ORTHO05D012953 9.9e-11 70.9 62 43.5
Sp3g32430 Schrenkiella parvula HOM05D010802 ORTHO05D012953 1.7e-10 70.1 60 48.3
MBI02_g23716_MAGBIO Magnolia biondii HOM05D004792 ORTHO05D005789 2.2e-10 69.7 124 46.0
Rhsim13G0175100 Rhododendron simsii HOM05D004792 ORTHO05D005789 2.9e-10 69.3 137 55.5
Zm00001eb299240 Zea mays HOM05D004792 ORTHO05D005789 6.4e-10 68.2 84 46.4
Dinv40512 Davidia involucrata HOM05D004792 ORTHO05D005789 3.2e-09 65.9 35 77.1
Zm00001eb092170 Zea mays HOM05D004792 ORTHO05D005789 1.6e-08 63.5 84 39.3
BcaC04g22871 Brassica carinata HOM05D010802 ORTHO05D012953 1.3e-07 60.5 85 37.6
BolC9t54342H Brassica oleracea HOM05D010802 ORTHO05D012953 1.3e-07 60.5 85 37.6
Os07g0123900 Oryza sativa ssp. japonica HOM05D004792 ORTHO05D005789 3.0e-07 59.3 56 64.3
A09p12160 Brassica napus HOM05D010802 ORTHO05D012953 5.1e-07 58.5 83 36.1
C09p14380 Brassica napus HOM05D010802 ORTHO05D012953 5.1e-07 58.5 83 36.1
BraA09t36860Z Brassica rapa HOM05D010802 ORTHO05D012953 5.1e-07 58.5 83 36.1
Lalb_Chr18g0059871 Lupinus albus HOM05D004792 ORTHO05D005789 6.6e-07 58.2 30 70.0
unitig_749.g13788 Utricularia gibba HOM05D000041 ORTHO05D008933 1.5e-06 57.0 39 51.3
BcaB07g31627 Brassica carinata HOM05D010802 ORTHO05D012953 1.9e-06 56.6 57 43.9
Aa31LG8G16070 Aethionema arabicum HOM05D010802 ORTHO05D012953 3.3e-06 55.8 54 46.3


User provided reference genes

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