Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G129300 Theobroma cacao HOM05D008314 ORTHO05D010369 7.3e-40 166.8 85 100.0
Thecc.03G325500 Theobroma cacao HOM05D008314 ORTHO05D010369 9.0e-38 159.8 86 97.7
Duzib160G0571 Durio zibethinus HOM05D008314 ORTHO05D010369 9.9e-29 129.8 85 78.8
Duzib235G1505 Durio zibethinus HOM05D008314 ORTHO05D010369 1.3e-28 129.4 84 78.6
Duzib160G0115 Durio zibethinus HOM05D008314 ORTHO05D010369 6.0e-26 120.6 83 74.7
Gohir.D06G149000 Gossypium hirsutum HOM05D008314 ORTHO05D010369 3.3e-24 114.8 83 72.3
Gohir.A06G143350 Gossypium hirsutum HOM05D008314 ORTHO05D010369 2.8e-23 111.7 86 68.6
Gorai.010G173500 Gossypium raimondii HOM05D008314 ORTHO05D010369 3.7e-23 111.3 85 71.8
QL05p001376 Quercus lobata HOM05D008314 ORTHO05D010369 5.8e-21 104.0 84 58.3
TWI14G0587 Tripterygium wilfordii HOM05D008314 ORTHO05D010369 9.3e-19 96.7 84 53.6
Atru.chr1.4110 Acer truncatum HOM05D008314 ORTHO05D010369 1.2e-18 96.3 87 58.6
Manes.11G013300 Manihot esculenta HOM05D008314 ORTHO05D010369 3.5e-18 94.7 85 58.8
SalBow6G0833 Salvia bowleyana HOM05D008314 ORTHO05D010369 4.6e-18 94.4 77 58.4
Ciclev10027008m.g Citrus clementina HOM05D008314 ORTHO05D010369 1.3e-17 92.8 87 57.5
Potri.003G072000 Populus trichocarpa HOM05D008314 ORTHO05D010369 2.3e-17 92.0 88 55.7
COL.COLO4_30857 Corchorus olitorius HOM05D008314 ORTHO05D010369 5.1e-17 90.9 63 73.0
Cc04_g00790 Coffea canephora HOM05D008314 ORTHO05D010369 8.7e-17 90.1 82 54.9
Rhsim12G0213100 Rhododendron simsii HOM05D008314 ORTHO05D010369 1.1e-16 89.7 85 55.3
Dinv37824 Davidia involucrata HOM05D008314 ORTHO05D010369 1.5e-16 89.4 90 58.9
MBI13_g01687_MAGBIO Magnolia biondii HOM05D008314 ORTHO05D010369 9.7e-16 86.7 78 56.4
Cpa.g.sc25.184 Carica papaya HOM05D008314 ORTHO05D010369 4.8e-15 84.3 89 55.1
Ciclev10026853m.g Citrus clementina HOM05D008314 ORTHO05D010369 6.3e-15 84.0 87 55.2
TAR070G0001 Trochodendron aralioides HOM05D008314 ORTHO05D010369 6.3e-15 84.0 73 54.8
Oeu008398.2 Olea europaea HOM05D008314 ORTHO05D010369 8.2e-15 83.6 86 55.8
CSS0041009 Camellia sinensis var. sinensis HOM05D008314 ORTHO05D010369 1.8e-14 82.4 86 52.3
Nn6g35721 Nelumbo nucifera HOM05D008314 ORTHO05D010369 1.8e-14 82.4 91 56.0
Actinidia24433 Actinidia chinensis HOM05D008314 ORTHO05D010369 3.1e-14 81.6 89 56.2
Sed0005090 Sechium edule HOM05D008314 ORTHO05D010369 4.1e-14 81.3 90 48.9
Glyma.16G013200 Glycine max HOM05D008314 ORTHO05D010369 5.3e-14 80.9 72 52.8
Oeu059021.1 Olea europaea HOM05D008314 ORTHO05D010369 9.0e-14 80.1 86 54.7
MELO3C024311.2 Cucumis melo HOM05D008314 ORTHO05D010369 1.2e-13 79.7 88 46.6
CiPaw.01G212000 Carya illinoinensis HOM05D008314 ORTHO05D010369 1.5e-13 79.3 89 50.6
FvH4_6g35740 Fragaria vesca HOM05D008314 ORTHO05D010369 2.0e-13 79.0 95 51.6
FAN05G1710 Fragaria x ananassa HOM05D008314 ORTHO05D010369 2.0e-13 79.0 95 49.5
CsaV3_7G033990 Cucumis sativus L. HOM05D008314 ORTHO05D010369 2.6e-13 78.6 76 50.0
ATR0099G003 Amborella trichopoda HOM05D008314 ORTHO05D010369 4.5e-13 77.8 88 52.3
FAN09G4263 Fragaria x ananassa HOM05D008314 ORTHO05D010369 4.5e-13 77.8 95 50.5
Prupe.3G031600 Prunus persica HOM05D008314 ORTHO05D010369 2.2e-12 75.5 87 47.1
ClCG09G001340 Citrullus lanatus HOM05D008314 ORTHO05D010369 2.9e-12 75.1 88 45.5
Phvul.010G123800 Phaseolus vulgaris HOM05D008314 ORTHO05D010369 2.9e-12 75.1 77 48.1
RcHm_v2.0_Chr2g0147741 Rosa chinensis HOM05D008314 ORTHO05D010369 3.8e-12 74.7 93 47.3
Rhsim08G0244000 Rhododendron simsii HOM05D008314 ORTHO05D010369 6.5e-12 73.9 99 40.4
Medtr8g022990 Medicago truncatula HOM05D008314 ORTHO05D010369 1.4e-11 72.8 73 47.9
PSO135G0082 Papaver somniferum HOM05D008314 ORTHO05D010369 1.4e-11 72.8 81 49.4
Lalb_Chr17g0343301 Lupinus albus HOM05D008314 ORTHO05D010369 2.5e-11 72.0 76 46.1
PSO724G1385 Papaver somniferum HOM05D008314 ORTHO05D010369 2.5e-11 72.0 83 45.8
FAN02G2954 Fragaria x ananassa HOM05D008314 ORTHO05D010369 4.2e-11 71.2 95 43.2
MD09G1173500 Malus domestica HOM05D008314 ORTHO05D010369 4.2e-11 71.2 95 42.1
arahy.Tifrunner.gnm1.ann1.K03VIU Arachis hypogaea HOM05D008314 ORTHO05D010369 6.1e-10 67.4 88 42.0
arahy.Tifrunner.gnm1.ann1.0KI29H Arachis hypogaea HOM05D008314 ORTHO05D010369 7.9e-10 67.0 88 42.0
Psat4g165800 Pisum sativum HOM05D008314 ORTHO05D010369 7.9e-10 67.0 35 71.4
CiPaw.01G212100 Carya illinoinensis HOM05D008314 ORTHO05D010369 1.4e-09 66.2 40 65.0
AUR62001414 Chenopodium quinoa HOM05D008314 ORTHO05D010369 1.4e-09 66.2 85 43.5
Os02g0564600 Oryza sativa ssp. japonica HOM05D008314 ORTHO05D010369 1.4e-09 66.2 36 72.2
Oeu059020.1 Olea europaea HOM05D008314 ORTHO05D010369 6.7e-09 63.9 47 61.7
SEGI_28829 Sequoiadendron giganteum HOM05D008314 ORTHO05D010369 1.5e-08 62.8 33 72.7
AUR62025623 Chenopodium quinoa HOM05D008314 ORTHO05D010369 7.4e-08 60.5 88 39.8
SEGI_18497 Sequoiadendron giganteum HOM05D042000 ORTHO05D010369 1.8e-06 55.8 31 67.7
Zm00001eb019440 Zea mays HOM05D008314 ORTHO05D010369 2.4e-06 55.5 77 39.0
Zm00001eb182560 Zea mays HOM05D008314 ORTHO05D010369 4.1e-06 54.7 40 52.5
SEGI_24113 Sequoiadendron giganteum HOM05D042000 ORTHO05D010369 9.1e-06 53.5 36 55.6


User provided reference genes

Program Settings