Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 1.2e-258 896.3 559 100.0
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 4.7e-220 768.1 557 84.4
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 3.8e-217 758.4 570 80.4
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 9.9e-210 733.8 570 79.5
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 2.4e-200 702.6 573 78.7
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 1.6e-199 699.9 524 82.3
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 2.1e-196 689.5 572 78.1
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 1.5e-181 640.2 561 72.0
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 1.1e-179 634.0 569 70.7
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 5.3e-179 631.7 571 69.4
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 1.2e-178 630.6 572 71.2
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 8.5e-177 624.4 563 70.7
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 3.6e-175 619.0 543 69.4
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 3.6e-175 619.0 566 67.3
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 6.1e-175 618.2 561 67.6
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 4.3e-173 612.1 567 69.7
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 7.4e-173 611.3 568 68.3
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 6.3e-172 608.2 538 70.8
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 6.3e-172 608.2 538 70.8
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 8.2e-172 607.8 553 68.7
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 4.1e-171 605.5 583 65.4
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 2.0e-170 603.2 541 69.1
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 1.7e-169 600.1 567 66.8
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 3.2e-168 595.9 549 66.8
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 1.2e-167 594.0 536 70.0
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 2.1e-167 593.2 545 66.8
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 2.7e-167 592.8 678 60.5
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 6.1e-167 591.7 568 65.1
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 7.9e-167 591.3 575 65.2
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 8.8e-166 587.8 543 67.6
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 2.8e-164 582.8 551 65.7
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 2.2e-161 573.2 577 64.3
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 6.5e-161 571.6 564 64.4
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 1.1e-160 570.9 538 68.2
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 3.2e-160 569.3 568 64.1
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 3.2e-160 569.3 537 67.8
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 2.1e-159 566.6 487 69.4
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 1.4e-158 563.9 546 64.8
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 2.0e-157 560.1 561 67.6
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 1.1e-155 554.3 546 66.1
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 1.4e-155 553.9 562 63.0
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 1.8e-155 553.5 557 61.0
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 2.4e-155 553.1 575 63.5
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 5.9e-154 548.5 555 64.7
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 1.9e-152 543.5 487 71.3
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 9.4e-152 541.2 518 63.7
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 8.0e-151 538.1 597 59.5
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 5.2e-150 535.4 570 62.1
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 7.5e-149 531.6 574 61.7
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 7.7e-146 521.5 430 74.9
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 1.3e-145 520.8 542 61.1
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 2.2e-145 520.0 490 66.5
EL10Ac7g18162 Beta vulgaris HOM05D004479 ORTHO05D005597 3.8e-145 519.2 505 61.4
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 1.9e-144 516.9 510 65.1
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 2.5e-144 516.5 509 64.8
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 3.2e-144 516.2 453 72.4
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 1.2e-143 514.2 544 61.9
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 1.6e-143 513.8 597 58.5
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 4.7e-143 512.3 434 74.2
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 1.4e-142 510.8 539 64.0
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 5.2e-142 508.8 582 60.5
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 1.2e-141 507.7 522 60.5
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 4.4e-141 505.8 567 58.4
MBI13_g01743_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 1.7e-140 503.8 479 65.6
MBI13_g34036_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 1.1e-139 501.1 477 65.0
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 4.5e-138 495.7 614 52.8
Hund18609 Selenicereus undatus HOM05D004479 ORTHO05D005597 2.9e-137 493.0 562 55.0
Sp2g14070 Schrenkiella parvula HOM05D004479 ORTHO05D005597 1.6e-135 487.3 560 57.9
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 1.4e-134 484.2 526 57.4
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 6.8e-134 481.9 566 59.0
Glyma.13G372700 Glycine max HOM05D004479 ORTHO05D005597 1.5e-133 480.7 442 69.9
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 1.1e-131 474.6 567 54.5
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 2.4e-131 473.4 568 53.0
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 1.6e-130 470.7 551 53.2
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 2.0e-130 470.3 574 58.5
unitig_748.g8028 Utricularia gibba HOM05D004479 ORTHO05D005597 4.3e-128 462.6 585 52.6
Zm00001eb320420 Zea mays HOM05D004479 ORTHO05D005597 5.6e-128 462.2 551 51.2
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 9.5e-128 461.5 535 52.3
CARHR213680 Cardamine hirsuta HOM05D004479 ORTHO05D005597 1.2e-127 461.1 555 57.1
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 1.4e-126 457.6 571 57.3
Hund18598 Selenicereus undatus HOM05D004479 ORTHO05D005597 1.8e-126 457.2 473 58.6
Carub.0005s0192 Capsella rubella HOM05D004479 ORTHO05D005597 6.8e-126 455.3 532 62.0
AT2G03070 Arabidopsis thaliana HOM05D004479 ORTHO05D005597 4.4e-125 452.6 539 56.8
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 6.4e-124 448.7 536 60.3
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 5.4e-123 445.7 549 54.6
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 1.3e-121 441.0 596 53.7
Ca_04816_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 1.1e-120 438.0 536 56.9
AL5G12650 Arabidopsis lyrata HOM05D004479 ORTHO05D005597 2.5e-120 436.8 537 60.0
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 4.3e-120 436.0 358 73.5
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 7.3e-120 435.3 357 71.7
ATR0626G211 Amborella trichopoda HOM05D004479 ORTHO05D005597 5.8e-117 425.6 558 50.2
A09p24080 Brassica napus HOM05D004479 ORTHO05D005597 6.4e-116 422.2 534 56.9
BraA09t38008Z Brassica rapa HOM05D004479 ORTHO05D005597 8.3e-116 421.8 537 56.4
BcaB07g30687 Brassica carinata HOM05D004479 ORTHO05D005597 1.6e-114 417.5 496 56.7
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 1.6e-114 417.5 570 47.7
C09p30960 Brassica napus HOM05D004479 ORTHO05D005597 2.7e-114 416.8 540 54.8
BolC9t55955H Brassica oleracea HOM05D004479 ORTHO05D005597 2.7e-114 416.8 540 54.8
BcaC04g21507 Brassica carinata HOM05D004479 ORTHO05D005597 4.6e-114 416.0 540 54.8
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 5.1e-113 412.5 324 71.3
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 7.3e-112 408.7 490 51.4
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 2.3e-110 403.7 356 66.6
Haze_16264 Corylus avellana HOM05D004479 ORTHO05D005597 3.3e-88 330.1 204 84.8
Cpa.g.sc1515.2 Carica papaya HOM05D004479 ORTHO05D005597 2.8e-87 327.0 216 77.8
Dinv37783 Davidia involucrata HOM05D004479 ORTHO05D005597 4.9e-84 316.2 217 81.1
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 5.4e-83 312.8 480 52.5
Os03g0423800 Oryza sativa ssp. japonica HOM05D004479 ORTHO05D005597 9.3e-83 312.0 232 67.2
Dinv37782 Davidia involucrata HOM05D004479 ORTHO05D005597 7.4e-80 302.4 355 63.7
BraA06t27217Z Brassica rapa HOM05D004479 ORTHO05D005597 4.5e-69 266.5 219 64.4
BolC7t43874H Brassica oleracea HOM05D004479 ORTHO05D005597 3.8e-68 263.5 219 64.4
BcaC06g31203 Brassica carinata HOM05D004479 ORTHO05D005597 8.4e-68 262.3 212 64.6
BcaC06g34021 Brassica carinata HOM05D004479 ORTHO05D005597 9.3e-67 258.8 209 65.6
A06p43310 Brassica napus HOM05D004479 ORTHO05D005597 1.1e-62 245.4 250 55.6
Psat1g118080 Pisum sativum HOM05D004479 ORTHO05D005597 1.9e-59 234.6 168 72.6
Pp3c18_4030 Physcomitrium patens HOM05D004479 ORTHO05D005597 7.2e-59 232.6 322 46.9
Oeu062492.1 Olea europaea HOM05D004479 ORTHO05D005597 8.2e-55 219.2 230 54.3
Mapoly0029s0023 Marchantia polymorpha HOM05D004479 ORTHO05D005597 1.6e-50 204.9 318 41.5
C07p33640 Brassica napus HOM05D004479 ORTHO05D005597 1.4e-49 201.8 219 54.8
AagrBONN_evm.TU.Sc2ySwM_117.2251 Anthoceros agrestis HOM05D004479 ORTHO05D005597 3.8e-44 183.7 218 49.1
SMO114G0145 Selaginella moellendorffii HOM05D004479 ORTHO05D005597 8.0e-42 176.0 265 43.0
CBR_g41305 Chara braunii HOM05D004479 ORTHO05D005597 3.9e-41 173.7 274 41.6
AagrBONN_evm.TU.Sc2ySwM_117.1357 Anthoceros agrestis HOM05D004479 ORTHO05D005597 6.7e-41 172.9 281 43.1
COL.COLO4_31578 Corchorus olitorius HOM05D001810 ORTHO05D005662 2.4e-38 164.5 190 55.8
CiPaw.01G090700 Carya illinoinensis HOM05D004479 ORTHO05D005597 2.0e-37 161.4 150 67.3
CARHR145470 Cardamine hirsuta HOM05D004479 ORTHO05D005597 1.6e-34 151.8 106 76.4
Aqoxy377s002 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 3.6e-34 150.6 181 54.1
Psat0s1762g0040 Pisum sativum HOM05D004479 ORTHO05D005597 4.7e-34 150.2 188 49.5
SEGI_11469 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 2.6e-32 144.4 150 51.3
Psat0s1227g0080 Pisum sativum HOM05D000020 ORTHO05D015801 2.4e-22 111.3 117 56.4
QL03p033126 Quercus lobata HOM05D004479 ORTHO05D005597 5.4e-22 110.2 69 81.2
Actinidia21652 Actinidia chinensis HOM05D004479 ORTHO05D005597 2.0e-21 108.2 66 75.8
QL05p046913 Quercus lobata HOM05D004479 ORTHO05D005597 1.3e-20 105.5 145 55.2
SHI42840 Sapria himalayana HOM05D004479 ORTHO05D005597 3.8e-20 104.0 133 48.1
SHI24407 Sapria himalayana HOM05D004479 ORTHO05D005597 8.6e-20 102.8 171 45.6
Cpa.g.sc155.18 Carica papaya HOM05D004479 ORTHO05D005597 3.3e-19 100.9 90 70.0
SHI42601 Sapria himalayana HOM05D004479 ORTHO05D005597 4.2e-19 100.5 152 42.1
COL.COLO4_18371 Corchorus olitorius HOM05D004479 ORTHO05D005597 5.5e-19 100.1 68 72.1
SEGI_18721 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 1.4e-17 95.5 91 54.9
COL.COLO4_27264 Corchorus olitorius HOM05D004479 ORTHO05D005597 1.5e-16 92.0 58 75.9
SHI31116 Sapria himalayana HOM05D004479 ORTHO05D005597 8.3e-15 86.3 52 80.8
SHI50578 Sapria himalayana HOM05D004479 ORTHO05D005597 3.5e-13 80.9 249 33.3
SHI42976 Sapria himalayana HOM05D004479 ORTHO05D005597 1.7e-12 78.6 115 43.5
SHI49595 Sapria himalayana HOM05D004479 ORTHO05D005597 8.6e-12 76.3 112 45.5
FAN12G4029 Fragaria x ananassa HOM05D002474 ORTHO05D007142 1.1e-11 75.9 88 59.1
Psat3g175600 Pisum sativum HOM05D004479 ORTHO05D005597 1.1e-11 75.9 70 62.9
Psat7g008520 Pisum sativum HOM05D004479 ORTHO05D005597 1.9e-11 75.1 75 56.0
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 4.3e-11 73.9 40 90.0
C09p24010 Brassica napus HOM05D002960 ORTHO05D042139 4.3e-11 73.9 40 90.0
BolC9t55321H Brassica oleracea HOM05D002960 ORTHO05D042139 4.3e-11 73.9 40 90.0
SHI31115 Sapria himalayana HOM05D004479 ORTHO05D005597 5.6e-11 73.6 58 69.0
Haze_18674 Corylus avellana HOM05D004479 ORTHO05D005597 1.2e-10 72.4 41 85.4
DCAR_030620 Daucus carota HOM05D004479 ORTHO05D005597 1.6e-10 72.0 88 58.0
SHI34972 Sapria himalayana HOM05D004479 ORTHO05D005597 1.0e-09 69.3 254 28.7
Psat0s2660g0040 Pisum sativum HOM05D000020 ORTHO05D015801 1.4e-09 68.9 67 53.7
Peaxi162Scf00038g02640 Petunia axillaris HOM05D004479 ORTHO05D029161 1.8e-09 68.6 72 56.9
SHI13126 Sapria himalayana HOM05D000105 ORTHO05D000023 2.3e-09 68.2 59 67.8
SHI36675 Sapria himalayana HOM05D004479 ORTHO05D005597 2.3e-09 68.2 54 64.8
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 6.8e-09 66.6 69 49.3
QL03p033134 Quercus lobata HOM05D004479 ORTHO05D005597 4.4e-08 63.9 50 80.0
Haze_16261 Corylus avellana HOM05D004479 ORTHO05D029161 5.8e-08 63.5 69 71.0
QL08p038027 Quercus lobata HOM05D004479 ORTHO05D337893 1.7e-07 62.0 201 33.8
Cpa.g.sc1515.1 Carica papaya HOM05D004479 ORTHO05D005597 3.7e-07 60.8 79 77.2
BcaC02g11491 Brassica carinata HOM05D019637 ORTHO05D018695 6.4e-07 60.1 39 84.6
C04p14790 Brassica napus HOM05D004479 ORTHO05D018695 6.4e-07 60.1 39 84.6
BolC4t23053H Brassica oleracea HOM05D004479 ORTHO05D018695 6.4e-07 60.1 39 84.6
SHI35501 Sapria himalayana HOM05D004479 ORTHO05D005597 6.4e-07 60.1 100 43.0
Hma1.2p1_0370F.1_g138010 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 1.4e-06 58.9 73 54.8
SHI38762 Sapria himalayana HOM05D023003 ORTHO05D005597 9.2e-06 56.2 48 56.2


User provided reference genes

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