Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G053000 Theobroma cacao HOM05D000003 ORTHO05D002259 1.2e-70 269.6 130 100.0
COL.COLO4_27741 Corchorus olitorius HOM05D000003 ORTHO05D002259 4.2e-18 95.1 117 38.5
COL.COLO4_22651 Corchorus olitorius HOM05D000003 ORTHO05D002259 7.1e-18 94.4 114 39.5
Thecc.06G083800 Theobroma cacao HOM05D000101 ORTHO05D000089 1.1e-15 87.0 110 35.5
Thecc.02G166000 Theobroma cacao HOM05D000003 ORTHO05D002259 1.5e-15 86.7 94 45.7
Thecc.04G115600 Theobroma cacao HOM05D000003 ORTHO05D002259 3.1e-13 79.0 112 36.6
COL.COLO4_36005 Corchorus olitorius HOM05D000003 ORTHO05D002259 5.8e-12 74.7 92 40.2
Thecc.01G176600 Theobroma cacao HOM05D000003 ORTHO05D002259 2.2e-11 72.8 106 35.8
Thecc.09G263100 Theobroma cacao HOM05D000003 ORTHO05D002259 8.4e-11 70.9 91 38.5
Thecc.09G090800 Theobroma cacao HOM05D000003 ORTHO05D002259 2.4e-10 69.3 63 47.6
Thecc.04G103900 Theobroma cacao HOM05D000003 ORTHO05D002259 4.2e-10 68.6 103 35.0
COL.COLO4_23441 Corchorus olitorius HOM05D000003 ORTHO05D002259 7.1e-10 67.8 107 34.6
Atru.chr13.1845 Acer truncatum HOM05D000003 ORTHO05D002259 9.3e-10 67.4 80 41.2
Thecc.05G094900 Theobroma cacao HOM05D000003 ORTHO05D002259 3.5e-09 65.5 86 36.0
Thecc.09G237600 Theobroma cacao HOM05D000003 ORTHO05D002259 4.6e-09 65.1 111 32.4
Atru.chr7.902 Acer truncatum HOM05D000003 ORTHO05D002259 7.8e-09 64.3 80 38.8
Atru.chr6.184 Acer truncatum HOM05D000003 ORTHO05D002259 1.3e-08 63.5 84 38.1
Thecc.05G083000 Theobroma cacao HOM05D000003 ORTHO05D002259 1.3e-08 63.5 82 34.1
Atru.chr7.675 Acer truncatum HOM05D000003 ORTHO05D002259 2.3e-08 62.8 81 38.3
Hma1.2p1_0024F.1_g016160 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 2.3e-08 62.8 99 34.3
TWI36G1756 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 3.0e-08 62.4 92 38.0
Atru.chr10.984 Acer truncatum HOM05D000502 ORTHO05D002259 3.9e-08 62.0 80 38.8
Atru.chr2.2465 Acer truncatum HOM05D000003 ORTHO05D002259 3.9e-08 62.0 83 43.4
Atru.chr3.2341 Acer truncatum HOM05D000003 ORTHO05D002259 3.9e-08 62.0 80 38.8
Gorai.010G061800 Gossypium raimondii HOM05D039936 ORTHO05D029079 3.9e-08 62.0 122 30.3
Hma1.2p1_0731F.1_g209885 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 5.1e-08 61.6 112 31.2
Hma1.2p1_1414F.1_g281865 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 5.1e-08 61.6 112 31.2
Hma1.2p1_2732F.1_g327655 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 5.1e-08 61.6 112 31.2
Thecc.08G107500 Theobroma cacao HOM05D000003 ORTHO05D002259 5.1e-08 61.6 108 35.2
Thecc.09G083400 Theobroma cacao HOM05D014430 ORTHO05D002259 5.1e-08 61.6 84 35.7
Atru.chr1.3974 Acer truncatum HOM05D000003 ORTHO05D000004 8.7e-08 60.8 85 38.8
Atru.chr2.2918 Acer truncatum HOM05D000003 ORTHO05D000004 8.7e-08 60.8 57 49.1
Atru.chr6.103 Acer truncatum HOM05D000003 ORTHO05D002259 8.7e-08 60.8 84 38.1
Atru.chr9.664 Acer truncatum HOM05D000003 ORTHO05D002259 8.7e-08 60.8 78 42.3
Thecc.03G016300 Theobroma cacao HOM05D000003 ORTHO05D002259 8.7e-08 60.8 102 30.4
COL.COLO4_22852 Corchorus olitorius HOM05D000003 ORTHO05D002259 1.1e-07 60.5 110 34.5
Atru.chr6.1326 Acer truncatum HOM05D000003 ORTHO05D002259 1.5e-07 60.1 80 37.5
Atru.chr11.1073 Acer truncatum HOM05D000003 ORTHO05D002259 2.5e-07 59.3 92 34.8
Atru.chr2.2563 Acer truncatum HOM05D000003 ORTHO05D002259 2.5e-07 59.3 86 40.7
Atru.chr1.1890 Acer truncatum HOM05D000003 ORTHO05D002259 3.3e-07 58.9 82 39.0
Atru.chr10.950 Acer truncatum HOM05D000003 ORTHO05D002259 3.3e-07 58.9 79 36.7
COL.COLO4_20696 Corchorus olitorius HOM05D000003 ORTHO05D002259 3.3e-07 58.9 111 32.4
Hma1.2p1_0585F.1_g183600 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 3.3e-07 58.9 89 32.6
Atru.chr4.1973 Acer truncatum HOM05D000003 ORTHO05D002259 5.6e-07 58.2 80 40.0
Hma1.2p1_0353F.1_g133190 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 5.6e-07 58.2 97 35.1
Thecc.05G093100 Theobroma cacao HOM05D000003 ORTHO05D002259 5.6e-07 58.2 79 43.0
Atru.chr6.253 Acer truncatum HOM05D000003 ORTHO05D002259 7.3e-07 57.8 80 42.5
Atru.chr1.3206 Acer truncatum HOM05D000003 ORTHO05D002259 9.6e-07 57.4 107 29.0
Atru.chr6.158 Acer truncatum HOM05D000003 ORTHO05D000004 9.6e-07 57.4 88 35.2
Atru.chr11.644 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-06 57.0 80 36.2
Atru.chr4.3084 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-06 56.2 86 37.2
Atru.chr8.2073 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-06 56.2 84 32.1
Duzib248G0582 Durio zibethinus HOM05D008457 ORTHO05D013867 2.1e-06 56.2 115 31.3
TWI36G1780 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 2.1e-06 56.2 95 31.6
Atru.chr2.283 Acer truncatum HOM05D000003 ORTHO05D002259 2.8e-06 55.8 83 36.1
Atru.chr3.3329 Acer truncatum HOM05D000003 ORTHO05D002259 2.8e-06 55.8 86 34.9
Atru.chr7.765 Acer truncatum HOM05D000003 ORTHO05D002259 2.8e-06 55.8 56 46.4
Atru.chr1.182 Acer truncatum HOM05D000003 ORTHO05D002259 3.6e-06 55.5 91 39.6
EL10Ac8g19409 Beta vulgaris HOM05D000003 ORTHO05D002259 3.6e-06 55.5 93 32.3
Nitab4.5_0006852g0020 Nicotiana tabacum HOM05D000155 ORTHO05D000022 6.2e-06 54.7 107 30.8
Atru.chr1.3836 Acer truncatum HOM05D000003 ORTHO05D002259 8.1e-06 54.3 90 32.2
Atru.chr6.208 Acer truncatum HOM05D000003 ORTHO05D002259 8.1e-06 54.3 82 39.0
Gorai.012G040600 Gossypium raimondii HOM05D008457 ORTHO05D002259 8.1e-06 54.3 103 28.2


User provided reference genes

Program Settings