Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G009500 Theobroma cacao HOM05D008181 ORTHO05D010459 2.1e-299 1031.6 511 100.0
Thecc.06G088800 Theobroma cacao HOM05D008181 ORTHO05D010459 5.2e-181 638.3 523 67.5
Thecc.01G188500 Theobroma cacao HOM05D008181 ORTHO05D010459 1.7e-179 633.3 512 68.8
Thecc.02G036800 Theobroma cacao HOM05D008181 ORTHO05D010459 4.7e-166 588.6 562 61.4
Thecc.03G161900 Theobroma cacao HOM05D008181 ORTHO05D010459 9.8e-156 554.3 574 56.6
Thecc.10G054600 Theobroma cacao HOM05D008181 ORTHO05D010459 4.1e-154 548.9 551 57.2
Thecc.05G225100 Theobroma cacao HOM05D008181 ORTHO05D010459 1.5e-151 540.4 595 54.1
Thecc.04G148800 Theobroma cacao HOM05D008181 ORTHO05D010459 7.6e-132 474.9 520 55.4
Thecc.05G196700 Theobroma cacao HOM05D008181 ORTHO05D010459 6.7e-120 435.3 569 48.3
Thecc.01G399000 Theobroma cacao HOM05D008181 ORTHO05D010459 6.7e-112 408.7 489 52.6
Thecc.09G213300 Theobroma cacao HOM05D008181 ORTHO05D010459 1.6e-110 404.1 541 47.7
Thecc.10G099400 Theobroma cacao HOM05D008181 ORTHO05D010459 6.9e-109 398.7 493 50.5
Thecc.10G113200 Theobroma cacao HOM05D008181 ORTHO05D010459 1.8e-101 374.0 329 67.5
Thecc.06G057500 Theobroma cacao HOM05D008181 ORTHO05D010459 5.1e-96 355.9 256 76.2
Thecc.09G199400 Theobroma cacao HOM05D008181 ORTHO05D010459 2.7e-89 333.6 564 41.1
Thecc.10G115900 Theobroma cacao HOM05D008181 ORTHO05D010459 5.3e-85 319.3 517 41.6
Thecc.02G137900 Theobroma cacao HOM05D008181 ORTHO05D010459 7.7e-84 315.5 198 85.4
Thecc.02G200300 Theobroma cacao HOM05D008181 ORTHO05D010459 2.0e-68 264.2 319 48.6
Thecc.05G178300 Theobroma cacao HOM05D008181 ORTHO05D010459 3.4e-63 246.9 158 77.2
Thecc.06G057400 Theobroma cacao HOM05D008181 ORTHO05D010459 1.4e-56 224.9 140 78.6
Thecc.04G033000 Theobroma cacao HOM05D008181 ORTHO05D010459 1.0e-51 208.8 109 85.3
Thecc.08G166700 Theobroma cacao HOM05D008181 ORTHO05D010459 1.7e-51 208.0 494 35.8
Thecc.09G272400 Theobroma cacao HOM05D008181 ORTHO05D010459 6.6e-51 206.1 109 87.2
Thecc.06G125800 Theobroma cacao HOM05D008181 ORTHO05D010459 7.5e-47 192.6 127 73.2
Thecc.02G255800 Theobroma cacao HOM05D008181 ORTHO05D010459 1.0e-43 182.2 109 75.2
Thecc.09G121600 Theobroma cacao HOM05D008181 ORTHO05D010459 4.0e-40 170.2 308 39.9
Thecc.01G141200 Theobroma cacao HOM05D008181 ORTHO05D010459 9.5e-34 149.1 383 32.9
Thecc.09G246600 Theobroma cacao HOM05D008181 ORTHO05D010459 1.8e-32 144.8 88 71.6
Thecc.08G140200 Theobroma cacao HOM05D008181 ORTHO05D010459 7.8e-28 129.4 183 49.7
Thecc.04G032900 Theobroma cacao HOM05D008181 ORTHO05D010459 4.3e-26 123.6 113 63.7
Thecc.02G138000 Theobroma cacao HOM05D008181 ORTHO05D010459 4.6e-20 103.6 82 64.6
Thecc.08G140100 Theobroma cacao HOM05D008181 ORTHO05D010459 7.8e-20 102.8 61 75.4
Thecc.07G175000 Theobroma cacao HOM05D008181 ORTHO05D010459 1.1e-18 99.0 110 54.5
Thecc.02G178200 Theobroma cacao HOM05D008181 ORTHO05D021025 9.6e-18 95.9 145 36.6
Thecc.05G125900 Theobroma cacao HOM05D008181 ORTHO05D010459 3.6e-17 94.0 64 70.3
Thecc.06G099200 Theobroma cacao HOM05D008181 ORTHO05D010459 3.6e-17 94.0 177 39.0
Thecc.07G103000 Theobroma cacao HOM05D008181 ORTHO05D021025 1.2e-15 89.0 217 27.6
Thecc.02G184700 Theobroma cacao HOM05D008181 ORTHO05D021025 9.3e-13 79.3 95 38.9
Thecc.02G219700 Theobroma cacao HOM05D008181 ORTHO05D021025 1.2e-12 79.0 152 31.6
Thecc.07G043300 Theobroma cacao HOM05D008181 ORTHO05D010459 1.4e-08 65.5 71 47.9
SGA_v2.0_scaffold206G41802 Striga asiatica HOM05D011572 ORTHO05D006517 9.0e-08 62.8 109 31.2
SGA_v2.0_scaffold365G50016 Striga asiatica HOM05D011572 ORTHO05D006517 9.0e-08 62.8 109 31.2
SGA_v2.0_scaffold41G15869 Striga asiatica HOM05D011572 ORTHO05D006517 1.2e-07 62.4 109 31.2
SGA_v2.0_scaffold12G06313 Striga asiatica HOM05D011572 ORTHO05D006517 2.6e-07 61.2 112 29.5
RcHm_v2.0_Chr2g0104761 Rosa chinensis HOM05D000529 ORTHO05D000472 5.8e-07 60.1 97 29.9
SGA_v2.0_scaffold22G09842 Striga asiatica HOM05D011572 ORTHO05D006517 5.8e-07 60.1 109 31.2
Thecc.07G167500 Theobroma cacao HOM05D008181 ORTHO05D010459 7.6e-07 59.7 244 28.7
Thecc.06G084900 Theobroma cacao HOM05D008181 ORTHO05D010459 1.3e-06 58.9 64 42.2
FvH4_1g15500 Fragaria vesca HOM05D000529 ORTHO05D000472 1.7e-06 58.5 97 29.9


User provided reference genes

Program Settings