Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G005400 Theobroma cacao HOM05D005423 ORTHO05D006223 2.9e-124 448.7 252 100.0
Duzib160G0446 Durio zibethinus HOM05D005423 ORTHO05D006223 5.8e-85 318.2 257 75.1
Gohir.D02G104700 Gossypium hirsutum HOM05D005423 ORTHO05D006223 4.2e-83 312.0 257 75.1
Gorai.005G118900 Gossypium raimondii HOM05D005423 ORTHO05D006223 1.2e-82 310.5 257 74.7
Gohir.A02G088801 Gossypium hirsutum HOM05D005423 ORTHO05D006223 3.5e-82 308.9 256 75.0
COL.COLO4_26869 Corchorus olitorius HOM05D005423 ORTHO05D006223 3.3e-56 222.6 219 64.8
Duzib043G0004 Durio zibethinus HOM05D005423 ORTHO05D006223 1.8e-54 216.9 245 62.0
TAR636G0950 Trochodendron aralioides HOM05D005423 ORTHO05D006223 4.5e-45 185.7 210 50.0
Lj1P1155T48 Lonicera japonica HOM05D005423 ORTHO05D006223 2.2e-44 183.3 198 50.0
Cfa000754 Carpinus fangiana HOM05D005423 ORTHO05D006223 6.5e-44 181.8 199 52.8
Manes.03G066900 Manihot esculenta HOM05D005423 ORTHO05D006223 2.7e-42 176.4 193 52.3
Hma1.2p1_0410F.1_g147050 Hydrangea macrophylla HOM05D005423 ORTHO05D006223 6.1e-42 175.3 212 48.1
TWI38G0231 Tripterygium wilfordii HOM05D005423 ORTHO05D006223 1.2e-40 171.0 142 62.7
Atru.chr10.659 Acer truncatum HOM05D005423 ORTHO05D006223 2.6e-40 169.9 191 50.8
CiPaw.09G149100 Carya illinoinensis HOM05D005423 ORTHO05D006223 9.8e-40 167.9 204 50.5
MD00G1097400 Malus domestica HOM05D005423 ORTHO05D006223 2.2e-39 166.8 149 58.4
Ciclev10017493m.g Citrus clementina HOM05D005423 ORTHO05D006223 8.3e-39 164.9 141 61.0
Nitab4.5_0004015g0040 Nicotiana tabacum HOM05D005423 ORTHO05D006223 8.3e-39 164.9 151 55.0
Prupe.4G102300 Prunus persica HOM05D005423 ORTHO05D006223 8.3e-39 164.9 149 57.7
Nitab4.5_0006659g0010 Nicotiana tabacum HOM05D005423 ORTHO05D006223 2.4e-38 163.3 151 54.3
Sc04g0008360 Simmondsia chinensis HOM05D005423 ORTHO05D006223 5.0e-36 155.6 193 48.7
Lsat_1_v5_gn_1_91741 Lactuca sativa HOM05D005423 ORTHO05D006223 1.9e-35 153.7 153 54.9
PGSC0003DMG400025363 Solanum tuberosum HOM05D005423 ORTHO05D006223 7.2e-35 151.8 152 50.0
CANSAT35G1706 Cannabis sativa HOM05D005423 ORTHO05D006223 1.2e-34 151.0 211 45.0
Potri.001G440800 Populus trichocarpa HOM05D005423 ORTHO05D006223 1.2e-34 151.0 145 53.8
Rhsim13G0126500 Rhododendron simsii HOM05D005423 ORTHO05D006223 1.2e-34 151.0 143 58.7
Solyc11g072680.1 Solanum lycopersicum HOM05D005423 ORTHO05D006223 1.2e-34 151.0 152 50.0
CAN.G84.20 Capsicum annuum HOM05D005423 ORTHO05D006223 1.6e-34 150.6 157 48.4
Sopen11g030350 Solanum pennellii HOM05D005423 ORTHO05D006223 1.6e-34 150.6 152 50.0
QL05p063092 Quercus lobata HOM05D005423 ORTHO05D006223 2.8e-34 149.8 192 47.4
AUR62028668 Chenopodium quinoa HOM05D005423 ORTHO05D006223 8.0e-34 148.3 222 39.6
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.3e-33 146.7 143 50.3
Migut.M01932 Erythranthe guttata HOM05D005423 ORTHO05D006223 4.0e-33 146.0 202 43.6
FvH4_3g11440 Fragaria vesca HOM05D005423 ORTHO05D006223 5.2e-33 145.6 139 51.8
EL10Ac5g10610 Beta vulgaris HOM05D005423 ORTHO05D006223 1.5e-32 144.1 144 47.9
FAN16G1003 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.5e-32 144.1 139 51.1
Aqoxy2G01436 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 2.0e-32 143.7 143 51.0
SGA_v2.0_scaffold1G00298 Striga asiatica HOM05D005423 ORTHO05D006223 5.7e-32 142.1 149 51.7
HanXRQChr01g0020631 Helianthus annuus HOM05D005423 ORTHO05D006223 9.8e-32 141.4 164 51.2
Ah.02g124440 Amaranthus hybridus HOM05D005423 ORTHO05D006223 3.7e-31 139.4 141 48.9
Haze_05969 Corylus avellana HOM05D005423 ORTHO05D006223 8.3e-31 138.3 173 49.1
AUR62008092 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.4e-30 137.5 143 47.6
AUR62008091 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.8e-30 137.1 141 48.2
Glyma.15G191500 Glycine max HOM05D005423 ORTHO05D006223 2.4e-30 136.7 169 46.7
AUR62008089 Chenopodium quinoa HOM05D005423 ORTHO05D006223 3.2e-30 136.3 141 49.6
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 5.4e-30 135.6 155 49.7
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 1.2e-29 134.4 163 50.3
Carub.0006s3088 Capsella rubella HOM05D005423 ORTHO05D006223 1.2e-29 134.4 165 48.5
Sp1g26680 Schrenkiella parvula HOM05D005423 ORTHO05D006223 2.0e-29 133.7 158 50.6
Aa31LG6G12020 Aethionema arabicum HOM05D005423 ORTHO05D006223 2.7e-29 133.3 146 50.0
Psat1g018720 Pisum sativum HOM05D005423 ORTHO05D006223 2.7e-29 133.3 151 49.0
Lj6g0018842 Lotus japonicus HOM05D005423 ORTHO05D006223 4.5e-29 132.5 161 48.4
PSO782G2497 Papaver somniferum HOM05D005423 ORTHO05D006223 1.0e-28 131.3 145 49.0
Ca_02385_v3 Cicer arietinum L. HOM05D005423 ORTHO05D006223 1.7e-28 130.6 151 47.0
BcaB04g18206 Brassica carinata HOM05D005423 ORTHO05D006223 2.3e-28 130.2 145 49.0
BraA08t33095Z Brassica rapa HOM05D005423 ORTHO05D006223 3.9e-28 129.4 145 49.7
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 3.9e-28 129.4 147 50.3
AT1G30800 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 5.0e-28 129.0 169 46.7
TPR.G22906 Trifolium pratense HOM05D005423 ORTHO05D006223 5.0e-28 129.0 197 39.6
A08p11040 Brassica napus HOM05D005423 ORTHO05D006223 6.6e-28 128.6 145 49.0
Thhalv10009325m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 6.6e-28 128.6 156 49.4
BcaC07g37806 Brassica carinata HOM05D005423 ORTHO05D006223 8.6e-28 128.3 145 48.3
BolC8t48195H Brassica oleracea HOM05D005423 ORTHO05D006223 8.6e-28 128.3 145 48.3
MBI19_g30013_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 8.6e-28 128.3 193 40.4
EL10Ac5g10640 Beta vulgaris HOM05D005423 ORTHO05D006223 1.5e-27 127.5 147 46.3
Sc21g0002200 Simmondsia chinensis HOM05D005423 ORTHO05D006223 2.5e-27 126.7 143 51.0
EL10Ac5g10674 Beta vulgaris HOM05D005423 ORTHO05D006223 1.2e-26 124.4 146 43.8
Sabra16G0300100 Salix brachista HOM05D005423 ORTHO05D006223 2.8e-26 123.2 119 54.6
Medtr2g047120 Medicago truncatula HOM05D005423 ORTHO05D006223 6.1e-26 122.1 151 44.4
Sabra16G0298100 Salix brachista HOM05D005423 ORTHO05D006223 6.1e-26 122.1 119 53.8
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 6.1e-26 122.1 149 49.0
BcaB01g00727 Brassica carinata HOM05D005423 ORTHO05D006223 2.3e-25 120.2 147 44.9
Sc21g0002210 Simmondsia chinensis HOM05D005423 ORTHO05D006223 2.3e-25 120.2 143 48.3
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 4.0e-25 119.4 144 45.1
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 5.2e-25 119.0 144 45.1
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 1.5e-24 117.5 144 44.4
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 1.5e-24 117.5 144 44.4
Lalb_Chr11g0073251 Lupinus albus HOM05D005423 ORTHO05D006223 1.5e-24 117.5 150 44.0
CDE04G0856 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 2.9e-23 113.2 142 43.7
Sp7g27780 Schrenkiella parvula HOM05D005423 ORTHO05D006223 3.5e-21 106.3 139 42.4
A03p59360 Brassica napus HOM05D005423 ORTHO05D006223 7.8e-21 105.1 139 41.0
BraA03t14993Z Brassica rapa HOM05D005423 ORTHO05D006223 7.8e-21 105.1 139 41.0
Thhalv10026388m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 1.3e-20 104.4 139 42.4
C07p57390 Brassica napus HOM05D005423 ORTHO05D006223 2.3e-20 103.6 139 40.3
BolC7t46208H Brassica oleracea HOM05D005423 ORTHO05D006223 2.3e-20 103.6 139 40.3
CDE04G2898 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 2.3e-20 103.6 139 41.7
Potri.011G155150 Populus trichocarpa HOM05D005423 ORTHO05D006223 2.3e-20 103.6 97 53.6
FAN25G0767 Fragaria x ananassa HOM05D005423 ORTHO05D006223 8.6e-20 101.7 92 53.3
FAN21G0600 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.5e-19 100.9 92 52.2
PSO210G3101 Papaver somniferum HOM05D005423 ORTHO05D006223 1.9e-19 100.5 141 39.0
Oeu063151.1 Olea europaea HOM05D005423 ORTHO05D006223 3.3e-19 99.8 92 56.5
AL7G22260 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 5.6e-19 99.0 145 40.7
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 5.6e-19 99.0 142 40.8
CARHR237890 Cardamine hirsuta HOM05D005423 ORTHO05D006223 7.3e-19 98.6 144 40.3
AT4G29980 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 9.5e-19 98.2 145 40.0
Carub.0007s1066 Capsella rubella HOM05D005423 ORTHO05D006223 1.6e-18 97.4 136 41.9
MBI19_g33491_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 1.6e-18 97.4 120 46.7
Phvul.009G218400 Phaseolus vulgaris HOM05D005423 ORTHO05D006223 1.6e-18 97.4 104 51.0
AUR62007135 Chenopodium quinoa HOM05D005423 ORTHO05D006223 4.7e-18 95.9 116 47.4
Oeu000496.1 Olea europaea HOM05D005423 ORTHO05D006223 4.7e-18 95.9 90 52.2
FvH4_1g24910 Fragaria vesca HOM05D005423 ORTHO05D006223 4.0e-17 92.8 100 49.0
BcaNung00507 Brassica carinata HOM05D005423 ORTHO05D006223 5.2e-17 92.4 140 38.6
FAN23G0143 Fragaria x ananassa HOM05D005423 ORTHO05D006223 2.0e-16 90.5 97 49.5
FvH4_5g21920 Fragaria vesca HOM05D005423 ORTHO05D006223 7.5e-16 88.6 103 48.5
FAN18G3875 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.1e-14 84.7 98 49.0
FvH4_5g18240 Fragaria vesca HOM05D005423 ORTHO05D006223 2.4e-14 83.6 98 48.0
AT4G12950 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 2.1e-13 80.5 150 38.0
DCAR_001448 Daucus carota HOM05D005423 ORTHO05D006223 2.1e-13 80.5 148 35.8
Aqoxy7G03258 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 2.3e-12 77.0 82 46.3
Mapoly0033s0033 Marchantia polymorpha HOM05D005423 ORTHO05D006223 5.6e-11 72.4 134 34.3
BcaC07g40588 Brassica carinata HOM05D005423 ORTHO05D006223 8.1e-10 68.6 74 47.3
Ciclev10001162m.g Citrus clementina HOM05D005305 ORTHO05D006394 3.1e-09 66.6 138 37.0
BcaC09g50401 Brassica carinata HOM05D005423 ORTHO05D006223 6.8e-09 65.5 74 47.3
Thhalv10027436m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 6.8e-09 65.5 131 35.1
BraA06t24297Z Brassica rapa HOM05D005305 ORTHO05D006394 8.9e-09 65.1 138 37.7
FvH4_6g29350 Fragaria vesca HOM05D005423 ORTHO05D006223 1.2e-08 64.7 78 47.4
DCAR_002955 Daucus carota HOM05D005423 ORTHO05D006223 3.4e-08 63.2 88 39.8
Sp7g28070 Schrenkiella parvula HOM05D005423 ORTHO05D006223 4.4e-08 62.8 137 34.3
TWI31G0537 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 5.8e-08 62.4 149 37.6
TAR624G0561 Trochodendron aralioides HOM05D005305 ORTHO05D006394 5.8e-08 62.4 138 33.3
CSS0043111 Camellia sinensis var. sinensis HOM05D005305 ORTHO05D006394 7.6e-08 62.0 147 34.0
A06p11170 Brassica napus HOM05D005305 ORTHO05D006394 1.3e-07 61.2 138 36.2
FAN11G1050 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.3e-07 61.2 75 48.0
BolC5t30066H Brassica oleracea HOM05D005305 ORTHO05D006394 1.7e-07 60.8 138 36.2
CARHR238100 Cardamine hirsuta HOM05D005423 ORTHO05D006223 1.7e-07 60.8 100 40.0
Thhalv10009974m.g Eutrema salsugineum HOM05D005305 ORTHO05D006394 1.7e-07 60.8 138 34.8
Nn5g28774 Nelumbo nucifera HOM05D005305 ORTHO05D006394 1.7e-07 60.8 143 36.4
Nn8g39654 Nelumbo nucifera HOM05D005423 ORTHO05D006223 1.7e-07 60.8 117 36.8
Sp1g13500 Schrenkiella parvula HOM05D005305 ORTHO05D006394 2.2e-07 60.5 124 37.1
CARHR015700 Cardamine hirsuta HOM05D005305 ORTHO05D006394 2.9e-07 60.1 124 38.7
AL1G27270 Arabidopsis lyrata HOM05D005305 ORTHO05D006394 3.7e-07 59.7 133 36.8
AT1G15190 Arabidopsis thaliana HOM05D005305 ORTHO05D006394 3.7e-07 59.7 133 37.6
BcaC05g25447 Brassica carinata HOM05D005305 ORTHO05D006394 3.7e-07 59.7 138 36.2
C05p13290 Brassica napus HOM05D005305 ORTHO05D006394 3.7e-07 59.7 138 36.2
FAN03G0475 Fragaria x ananassa HOM05D005423 ORTHO05D006223 3.7e-07 59.7 74 47.3
FAN14G5542 Fragaria x ananassa HOM05D005423 ORTHO05D006223 3.7e-07 59.7 74 47.3
Pp3c6_3400 Physcomitrium patens HOM05D005423 ORTHO05D006223 3.7e-07 59.7 144 28.5
BcaB02g06584 Brassica carinata HOM05D005305 ORTHO05D006394 4.9e-07 59.3 138 35.5
FAN18G0575 Fragaria x ananassa HOM05D005423 ORTHO05D006223 6.4e-07 58.9 74 45.9
Pp3c3_10930 Physcomitrium patens HOM05D022662 ORTHO05D006223 6.4e-07 58.9 152 29.6
Carub.0001s1494 Capsella rubella HOM05D005305 ORTHO05D006394 1.4e-06 57.8 133 36.8
Duzib187G0918 Durio zibethinus HOM05D005305 ORTHO05D006394 1.4e-06 57.8 164 31.7
Pp3c13_8280 Physcomitrium patens HOM05D022662 ORTHO05D006223 1.9e-06 57.4 136 32.4
Medtr2g007870 Medicago truncatula HOM05D005305 ORTHO05D006394 3.2e-06 56.6 104 36.5
Atru.chr4.616 Acer truncatum HOM05D005305 ORTHO05D006394 4.1e-06 56.2 147 33.3
Actinidia33832 Actinidia chinensis HOM05D005305 ORTHO05D006394 5.4e-06 55.8 143 32.2
Cpa.g.sc72.34 Carica papaya HOM05D005305 ORTHO05D006394 5.4e-06 55.8 108 37.0
Phvul.006G211300 Phaseolus vulgaris HOM05D005305 ORTHO05D006394 5.4e-06 55.8 158 27.8
A02p31660 Brassica napus HOM05D005305 ORTHO05D006394 7.1e-06 55.5 120 35.8
Sp2g12560 Schrenkiella parvula HOM05D005305 ORTHO05D006394 9.2e-06 55.1 139 32.4


User provided reference genes

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