Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G293900 Theobroma cacao HOM05D006444 ORTHO05D007748 2.7e-194 681.8 340 100.0
Duzib151G0636 Durio zibethinus HOM05D006444 ORTHO05D007748 1.2e-149 533.5 339 80.8
Dinv30860 Davidia involucrata HOM05D006444 ORTHO05D007748 3.1e-89 332.8 343 52.2
TAR365G0240 Trochodendron aralioides HOM05D006444 ORTHO05D007748 2.8e-82 309.7 353 49.0
GSVIVG01031202001 Vitis vinifera HOM05D006444 ORTHO05D007748 5.0e-79 298.9 340 47.9
Haze_04092 Corylus avellana HOM05D006444 ORTHO05D007748 8.4e-79 298.1 342 48.8
Rhsim11G0093000 Rhododendron simsii HOM05D006444 ORTHO05D007748 3.2e-78 296.2 345 47.8
QL03p017976 Quercus lobata HOM05D006444 ORTHO05D007748 3.5e-77 292.7 342 48.2
Sabra05G0026600 Salix brachista HOM05D006444 ORTHO05D007748 1.3e-76 290.8 336 47.0
vmacro01541 Vaccinium macrocarpon HOM05D006444 ORTHO05D007748 1.3e-76 290.8 342 46.2
Ciclev10005435m.g Citrus clementina HOM05D006444 ORTHO05D007748 1.5e-75 287.3 326 50.9
PGR031G3221 Punica granatum HOM05D006444 ORTHO05D007748 9.7e-75 284.6 337 46.0
Glyma.03G233000 Glycine max HOM05D006444 ORTHO05D007748 1.1e-73 281.2 340 47.9
Nn4g25689 Nelumbo nucifera HOM05D006444 ORTHO05D007748 1.4e-73 280.8 346 46.5
Manes.09G174800 Manihot esculenta HOM05D006444 ORTHO05D007748 1.8e-73 280.4 333 46.8
CiPaw.07G026800 Carya illinoinensis HOM05D006444 ORTHO05D007748 4.1e-73 279.3 327 47.1
CSS0047685 Camellia sinensis var. sinensis HOM05D006444 ORTHO05D007748 5.3e-73 278.9 337 46.3
Eucgr.H03280 Eucalyptus grandis HOM05D006444 ORTHO05D007748 9.0e-73 278.1 341 47.5
Ciclev10001747m.g Citrus clementina HOM05D006444 ORTHO05D007748 1.5e-72 277.3 334 46.1
Glyma.19G230000 Glycine max HOM05D006444 ORTHO05D007748 1.5e-72 277.3 343 47.5
Nitab4.5_0014337g0020 Nicotiana tabacum HOM05D006444 ORTHO05D007748 2.2e-71 273.5 338 45.6
Potri.005G020600 Populus trichocarpa HOM05D006444 ORTHO05D007748 2.2e-71 273.5 336 44.9
Prupe.1G126500 Prunus persica HOM05D006444 ORTHO05D007748 2.2e-71 273.5 228 59.6
VMungo1383G3166 Vigna mungo HOM05D006444 ORTHO05D007748 2.2e-71 273.5 343 45.5
Sopen01g043670 Solanum pennellii HOM05D006444 ORTHO05D007748 1.1e-70 271.2 340 46.2
Medtr7g112320 Medicago truncatula HOM05D006444 ORTHO05D007748 2.5e-70 270.0 340 43.5
Nn3g21596 Nelumbo nucifera HOM05D006444 ORTHO05D007748 3.2e-70 269.6 344 45.6
Phvul.001G226600 Phaseolus vulgaris HOM05D006444 ORTHO05D007748 3.2e-70 269.6 341 46.0
ClCG03G017520 Citrullus lanatus HOM05D006444 ORTHO05D007748 1.2e-69 267.7 333 44.1
Gohir.A08G207200 Gossypium hirsutum HOM05D006444 ORTHO05D007748 1.2e-69 267.7 346 46.0
Lj5A342G70 Lonicera japonica HOM05D006444 ORTHO05D007748 1.2e-69 267.7 273 52.7
Nitab4.5_0002715g0070 Nicotiana tabacum HOM05D006444 ORTHO05D007748 2.1e-69 266.9 338 45.9
arahy.Tifrunner.gnm1.ann1.I0464U Arachis hypogaea HOM05D006444 ORTHO05D007748 2.7e-69 266.5 345 44.6
Lj1g0016861 Lotus japonicus HOM05D006444 ORTHO05D007748 7.9e-69 265.0 354 45.5
arahy.Tifrunner.gnm1.ann1.T18680 Arachis hypogaea HOM05D006444 ORTHO05D007748 1.8e-68 263.8 344 43.9
TPR.G1652 Trifolium pratense HOM05D006444 ORTHO05D007748 1.8e-68 263.8 340 43.2
Peaxi162Scf00073g00128 Petunia axillaris HOM05D006444 ORTHO05D007748 2.3e-68 263.5 337 45.7
Lalb_Chr18g0045971 Lupinus albus HOM05D006444 ORTHO05D007748 3.0e-68 263.1 335 44.8
COL.COLO4_04127 Corchorus olitorius HOM05D006444 ORTHO05D007748 3.9e-68 262.7 341 44.0
CAN.G1273.16 Capsicum annuum HOM05D006444 ORTHO05D007748 5.1e-68 262.3 373 44.0
Hund21734 Selenicereus undatus HOM05D006444 ORTHO05D007748 8.8e-68 261.5 341 44.3
Ca_09322_v3 Cicer arietinum L. HOM05D006444 ORTHO05D007748 1.5e-67 260.8 341 43.7
Prupe.6G316100 Prunus persica HOM05D006444 ORTHO05D007748 4.3e-67 259.2 339 45.1
Cc10_g14110 Coffea canephora HOM05D006444 ORTHO05D007748 5.7e-67 258.8 338 45.9
MD13G1159900 Malus domestica HOM05D006444 ORTHO05D007748 5.7e-67 258.8 239 56.5
Gorai.004G237700 Gossypium raimondii HOM05D006444 ORTHO05D007748 1.3e-66 257.7 346 44.5
Hma1.2p1_0472F.1_g159820 Hydrangea macrophylla HOM05D006444 ORTHO05D007748 1.3e-66 257.7 354 45.2
Oeu045894.1 Olea europaea HOM05D006444 ORTHO05D007748 1.3e-66 257.7 324 45.4
ATR0706G081 Amborella trichopoda HOM05D006444 ORTHO05D007748 2.8e-66 256.5 255 51.4
DCAR_025267 Daucus carota HOM05D006444 ORTHO05D007748 3.7e-66 256.1 336 43.5
CANSAT54G2069 Cannabis sativa HOM05D006444 ORTHO05D007748 4.8e-66 255.8 272 50.4
Gohir.D08G223800 Gossypium hirsutum HOM05D006444 ORTHO05D007748 4.8e-66 255.8 346 44.5
Thecc.05G319500 Theobroma cacao HOM05D006444 ORTHO05D007748 8.2e-66 255.0 342 43.6
Lsat_1_v5_gn_7_73840 Lactuca sativa HOM05D006444 ORTHO05D007748 1.1e-65 254.6 344 43.0
PGSC0003DMG400024779 Solanum tuberosum HOM05D006444 ORTHO05D007748 4.1e-65 252.7 367 42.2
CDE09G1197 Ceratophyllum demersum HOM05D006444 ORTHO05D007748 5.3e-65 252.3 205 59.0
Sed0009356 Sechium edule HOM05D006444 ORTHO05D007748 5.9e-64 248.8 333 42.6
CsaV3_1G038500 Cucumis sativus L. HOM05D006444 ORTHO05D007748 1.0e-63 248.1 280 46.4
PSO357G0038 Papaver somniferum HOM05D006444 ORTHO05D007748 8.5e-63 245.0 346 43.1
Oeu028007.2 Olea europaea HOM05D006444 ORTHO05D007748 3.2e-62 243.0 344 41.3
Cpa.g.sc48.132 Carica papaya HOM05D006444 ORTHO05D007748 4.2e-62 242.7 384 39.1
TWI56G1276 Tripterygium wilfordii HOM05D006444 ORTHO05D007748 4.2e-62 242.7 341 43.1
RcHm_v2.0_Chr4g0424201 Rosa chinensis HOM05D006444 ORTHO05D007748 7.2e-62 241.9 244 55.3
PSO170G3086 Papaver somniferum HOM05D006444 ORTHO05D007748 9.4e-62 241.5 346 42.5
Glyma.10G148900 Glycine max HOM05D006444 ORTHO05D007748 1.6e-61 240.7 347 42.9
VMungo0720G1741 Vigna mungo HOM05D006444 ORTHO05D007748 1.6e-61 240.7 336 42.0
MSTRG.20391 Avicennia marina HOM05D006444 ORTHO05D007748 2.1e-61 240.4 336 43.5
MELO3C015276.2 Cucumis melo HOM05D006444 ORTHO05D007748 2.1e-61 240.4 280 45.0
Atru.chr2.132 Acer truncatum HOM05D006444 ORTHO05D007748 7.9e-61 238.4 337 43.6
Phvul.007G199800 Phaseolus vulgaris HOM05D006444 ORTHO05D007748 1.8e-60 237.3 341 42.2
EL10Ac4g09842 Beta vulgaris HOM05D006444 ORTHO05D007748 3.0e-60 236.5 340 42.1
Migut.B00986 Erythranthe guttata HOM05D006444 ORTHO05D007748 1.1e-59 234.6 354 38.7
FAN02G1429 Fragaria x ananassa HOM05D006444 ORTHO05D007748 3.3e-59 233.0 351 43.0
RcHm_v2.0_Chr3g0456691 Rosa chinensis HOM05D006444 ORTHO05D007748 5.7e-59 232.3 346 43.1
THA.LOC104818740 Tarenaya hassleriana HOM05D006444 ORTHO05D007748 1.3e-58 231.1 220 50.9
FAN14G0724 Fragaria x ananassa HOM05D006444 ORTHO05D007748 2.8e-58 229.9 351 43.3
FAN05G1290 Fragaria x ananassa HOM05D006444 ORTHO05D007748 6.3e-58 228.8 348 43.1
SalBow7G4019 Salvia bowleyana HOM05D006444 ORTHO05D007748 6.3e-58 228.8 321 42.7
FvH4_6g07110 Fragaria vesca HOM05D006444 ORTHO05D007748 1.1e-57 228.0 351 43.0
HPP92_011867 Vanilla planifolia HOM05D006444 ORTHO05D007748 4.1e-57 226.1 294 43.9
Aqoxy2G02847 Aquilegia oxysepala HOM05D006444 ORTHO05D007748 9.1e-57 224.9 360 40.3
ECA236G3124 Erigeron canadensis HOM05D006444 ORTHO05D007748 9.1e-57 224.9 339 40.1
AUR62005256 Chenopodium quinoa HOM05D006444 ORTHO05D007748 2.6e-56 223.4 269 45.4
AUR62000705 Chenopodium quinoa HOM05D006444 ORTHO05D007748 5.9e-56 222.2 269 45.7
HanXRQChr15g0495151 Helianthus annuus HOM05D006444 ORTHO05D007748 5.9e-56 222.2 345 40.3
Zm00001eb014130 Zea mays HOM05D006444 ORTHO05D007748 5.9e-56 222.2 304 44.1
CDE02G1332 Ceratophyllum demersum HOM05D006444 ORTHO05D007748 7.7e-56 221.9 212 52.8
SGA_v2.0_scaffold4G01962 Striga asiatica HOM05D006444 ORTHO05D007748 8.5e-55 218.4 346 40.8
Sp2g21090 Schrenkiella parvula HOM05D006444 ORTHO05D007748 1.5e-54 217.6 310 40.6
Hund21730 Selenicereus undatus HOM05D006444 ORTHO05D007748 1.2e-53 214.5 291 43.0
Aa31LG11G9750 Aethionema arabicum HOM05D006444 ORTHO05D007748 4.0e-52 209.5 224 49.6
Os03g0301400 Oryza sativa ssp. japonica HOM05D006444 ORTHO05D007748 4.0e-52 209.5 271 43.2
A06p37110 Brassica napus HOM05D006444 ORTHO05D007748 8.8e-52 208.4 261 42.9
BraA06t26637Z Brassica rapa HOM05D006444 ORTHO05D007748 8.8e-52 208.4 261 42.9
Thhalv10004624m.g Eutrema salsugineum HOM05D006444 ORTHO05D007748 3.3e-51 206.5 258 43.8
MBI19_g14287_MAGBIO Magnolia biondii HOM05D006444 ORTHO05D007748 7.5e-51 205.3 244 46.3
BolC7t44660H Brassica oleracea HOM05D006444 ORTHO05D007748 9.7e-51 204.9 261 42.5
Carub.0006s2458 Capsella rubella HOM05D006444 ORTHO05D007748 1.3e-50 204.5 261 41.0
Psat3g013840 Pisum sativum HOM05D006444 ORTHO05D007748 2.2e-50 203.8 300 43.3
AT5G26940 Arabidopsis thaliana HOM05D006444 ORTHO05D007748 9.1e-49 198.4 261 41.4
AL6G38850 Arabidopsis lyrata HOM05D006444 ORTHO05D007748 1.6e-48 197.6 261 41.8
CARHR186630 Cardamine hirsuta HOM05D006444 ORTHO05D007748 7.7e-48 195.3 262 40.1
Sc16g0008870 Simmondsia chinensis HOM05D006444 ORTHO05D007748 7.7e-48 195.3 279 44.1
unitig_46.g18373 Utricularia gibba HOM05D006444 ORTHO05D007748 7.7e-48 195.3 199 49.2
C07p41320 Brassica napus HOM05D006444 ORTHO05D007748 1.1e-46 191.4 286 38.8
FvH4_4g19220 Fragaria vesca HOM05D006444 ORTHO05D007748 4.2e-46 189.5 233 45.5
FAN07G1328 Fragaria x ananassa HOM05D006444 ORTHO05D007748 2.1e-45 187.2 236 45.8
FAN12G3514 Fragaria x ananassa HOM05D006444 ORTHO05D007748 1.8e-44 184.1 234 45.3
Os04g0623400 Oryza sativa ssp. japonica HOM05D006444 ORTHO05D007748 6.8e-44 182.2 192 48.4
FAN12G0061 Fragaria x ananassa HOM05D006444 ORTHO05D007748 2.8e-42 176.8 234 42.7
AagrBONN_evm.TU.Sc2ySwM_344.4230 Anthoceros agrestis HOM05D006444 ORTHO05D007748 3.5e-40 169.9 200 44.0
Mapoly0162s0013 Marchantia polymorpha HOM05D006444 ORTHO05D007748 1.0e-39 168.3 201 43.8
Atru.chr4.2940 Acer truncatum HOM05D006444 ORTHO05D007748 4.7e-37 159.5 119 63.0
SMO116G0265 Selaginella moellendorffii HOM05D006444 ORTHO05D007748 1.0e-36 158.3 260 36.2
SEGI_10576 Sequoiadendron giganteum HOM05D006444 ORTHO05D007748 6.8e-36 155.6 150 50.0
Pp3c18_14120 Physcomitrium patens HOM05D001061 ORTHO05D007748 1.3e-34 151.4 210 37.6
TAR362G0047 Trochodendron aralioides HOM05D006444 ORTHO05D007748 1.6e-32 144.4 206 41.3
MD12G1209000 Malus domestica HOM05D006444 ORTHO05D007748 3.6e-29 133.3 135 49.6
FAN09G3591 Fragaria x ananassa HOM05D006444 ORTHO05D007748 4.9e-26 122.9 145 49.7
Actinidia35534 Actinidia chinensis HOM05D006444 ORTHO05D007748 1.8e-25 120.9 219 37.9
MD12G1208900 Malus domestica HOM05D006444 ORTHO05D007748 6.6e-23 112.5 198 40.4
MCO01G157 Micromonas commoda HOM05D005236 ORTHO05D006557 1.1e-22 111.7 185 36.2
Actinidia35535 Actinidia chinensis HOM05D006444 ORTHO05D007748 1.1e-14 85.1 86 53.5
EL10Ac4g09387 Beta vulgaris HOM05D006444 ORTHO05D007748 1.5e-14 84.7 74 58.1
PRCOL_00002449 Prasinoderma coloniale HOM05D005236 ORTHO05D006557 2.3e-12 77.4 202 30.2
Cre01.g021850 Chlamydomonas reinhardtii HOM05D005236 ORTHO05D006557 1.2e-08 65.1 180 28.9
SEGI_25648 Sequoiadendron giganteum HOM05D006444 ORTHO05D007748 7.3e-06 55.8 114 33.3


User provided reference genes

Program Settings