Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G098800 Theobroma cacao HOM05D016890 ORTHO05D019066 6.9e-84 313.9 157 100.0
Thecc.04G098300 Theobroma cacao HOM05D016890 ORTHO05D019066 7.4e-54 214.2 106 98.1
Thecc.04G099100 Theobroma cacao HOM05D016890 ORTHO05D019066 6.3e-53 211.1 106 96.2
COL.COLO4_37973 Corchorus olitorius HOM05D016890 ORTHO05D019066 4.1e-20 102.1 92 58.7
Gohir.A11G061500 Gossypium hirsutum HOM05D016890 ORTHO05D019066 6.1e-16 88.2 125 47.2
Gohir.D11G065400 Gossypium hirsutum HOM05D016890 ORTHO05D019066 3.0e-15 85.9 113 46.9
Gorai.007G070600 Gossypium raimondii HOM05D016890 ORTHO05D019066 3.0e-15 85.9 113 46.9
Cfa000633 Carpinus fangiana HOM05D016567 ORTHO05D016916 3.5e-11 72.4 99 38.4
Gohir.A11G061300 Gossypium hirsutum HOM05D016890 ORTHO05D019066 4.5e-11 72.0 108 43.5
Manes.02G057100 Manihot esculenta HOM05D052986 ORTHO05D016916 3.3e-09 65.9 94 43.6
Manes.02G056800 Manihot esculenta HOM05D052986 ORTHO05D016916 5.6e-09 65.1 71 52.1
CiPaw.03G086600 Carya illinoinensis HOM05D016567 ORTHO05D016916 7.3e-09 64.7 98 40.8
CiPaw.03G086800 Carya illinoinensis HOM05D016567 ORTHO05D016916 1.6e-08 63.5 95 42.1
CiPaw.04G054000 Carya illinoinensis HOM05D016567 ORTHO05D016916 2.8e-08 62.8 105 43.8
Thecc.04G098600 Theobroma cacao HOM05D012781 ORTHO05D014605 6.1e-08 61.6 98 40.8
Thecc.04G099400 Theobroma cacao HOM05D012781 ORTHO05D014605 8.0e-08 61.2 75 45.3
CiPaw.03G121700 Carya illinoinensis HOM05D016567 ORTHO05D016916 1.8e-07 60.1 112 39.3
COL.COLO4_37976 Corchorus olitorius HOM05D012781 ORTHO05D014605 1.8e-07 60.1 104 43.3
Gohir.1Z049651 Gossypium hirsutum HOM05D012781 ORTHO05D014605 5.2e-07 58.5 95 34.7
Gohir.A07G080100 Gossypium hirsutum HOM05D012781 ORTHO05D014605 5.2e-07 58.5 95 34.7
Thecc.04G099000 Theobroma cacao HOM05D012781 ORTHO05D014605 6.8e-07 58.2 75 42.7
Gorai.001G209000 Gossypium raimondii HOM05D010186 ORTHO05D012215 8.9e-07 57.8 90 40.0
Thecc.08G202000 Theobroma cacao HOM05D012781 ORTHO05D014605 2.6e-06 56.2 98 40.8
Gohir.A07G182000 Gossypium hirsutum HOM05D010186 ORTHO05D012215 4.4e-06 55.5 99 37.4
Gohir.D07G188700 Gossypium hirsutum HOM05D010186 ORTHO05D012215 5.8e-06 55.1 90 37.8
Gorai.001G209500 Gossypium raimondii HOM05D010186 ORTHO05D012215 5.8e-06 55.1 90 37.8
Gohir.D07G188300 Gossypium hirsutum HOM05D010186 ORTHO05D012215 9.8e-06 54.3 91 39.6
Thecc.04G100000 Theobroma cacao HOM05D018354 ORTHO05D022451 9.8e-06 54.3 95 30.5


User provided reference genes

Program Settings