Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 2046.2 1043 100.0
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1860.9 1054 90.7
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1860.1 1049 90.8
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1855.9 1054 90.5
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1843.6 1048 90.0
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1776.9 1043 87.8
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1755.3 1048 86.1
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1696.0 1056 82.3
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1684.8 1054 82.5
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1680.2 1049 81.6
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 1676.0 1048 82.1
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1674.1 1055 80.9
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1667.9 1052 82.0
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1667.1 1057 81.5
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 1666.7 1055 80.9
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 1660.2 1055 80.9
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 1658.3 1055 80.9
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1651.0 1048 81.6
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1645.9 1029 82.2
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 1642.9 1056 80.5
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1638.6 1052 80.7
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1636.3 1048 80.7
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1635.9 1058 80.0
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1635.5 1048 80.7
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1632.8 1055 80.2
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1627.1 1056 79.3
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1627.1 1057 78.8
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1625.5 1048 79.6
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1625.1 1056 79.6
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1624.8 1089 78.2
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1622.8 1056 79.0
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1622.1 1055 79.2
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1620.5 1048 79.5
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1619.4 1029 81.1
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1618.2 1067 79.6
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1615.5 1068 78.5
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1615.5 1055 79.1
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 1615.1 1050 79.3
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1614.4 1055 79.0
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 1614.0 1029 80.5
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1607.8 1054 79.6
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1606.3 1056 78.3
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1602.8 1048 78.9
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1601.6 1056 78.2
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1601.6 1059 78.0
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1598.9 1056 76.9
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1597.8 1048 78.4
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1590.1 1054 78.3
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1589.7 1055 77.9
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1589.3 1048 77.5
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1589.3 1078 77.1
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1582.8 1055 78.2
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1580.8 1057 77.3
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 1580.1 1053 77.2
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 1572.4 1052 77.5
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1568.5 1055 76.4
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1567.0 1046 76.9
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1565.4 1025 78.6
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1563.5 1091 75.9
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 0.0e+00 1556.6 1052 77.2
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1556.6 1069 76.1
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1555.0 1054 77.6
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1553.5 1053 76.3
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1552.7 1049 75.8
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1551.6 1056 75.9
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1551.2 1048 76.1
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1550.8 1049 75.4
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1550.4 1049 76.5
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1550.4 1043 76.5
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1549.3 1057 76.4
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1547.7 1046 76.2
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1546.6 1050 75.2
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1543.9 1049 75.9
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1543.5 1059 77.1
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 1540.4 1049 75.6
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1536.5 1053 75.5
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 1536.2 1049 75.4
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1532.3 1048 75.4
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 1531.9 1058 76.8
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1530.8 1058 76.7
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1526.9 1053 74.6
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1525.8 1057 74.6
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1525.8 1057 74.6
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1525.0 1053 74.5
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1524.2 1101 74.0
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1520.8 1063 74.3
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1520.4 1053 74.9
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1512.7 1055 74.5
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1511.5 1049 75.0
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1510.0 1052 74.3
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1507.3 1099 73.7
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1502.3 1049 74.5
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1500.3 1026 75.2
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1493.0 1043 74.2
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1489.9 1148 68.6
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 0.0e+00 1480.3 1068 72.7
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1473.8 1029 73.3
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1467.6 1052 72.3
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1459.9 1054 71.7
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1444.9 1030 72.1
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1413.3 1031 70.9
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 0.0e+00 1406.7 1049 72.4
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1379.4 1054 68.9
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 0.0e+00 1338.6 1055 67.2
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 0.0e+00 1327.4 938 73.5
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 0.0e+00 1310.8 963 70.5
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1306.2 1015 68.2
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1294.6 1033 66.6
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 0.0e+00 1294.3 970 68.4
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 0.0e+00 1284.2 1041 65.5
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 0.0e+00 1251.5 1032 63.4
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 0.0e+00 1210.3 816 75.1
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 0.0e+00 1127.5 1027 58.2
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 0.0e+00 1087.4 1032 57.8
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 0.0e+00 1085.9 758 75.1
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 9.5e-307 1057.0 1026 55.0
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 2.0e-304 1049.3 625 86.6
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 7.8e-301 1037.3 1037 55.0
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 6.0e-293 1011.1 707 71.3
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 5.1e-292 1008.1 707 70.7
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.3e-283 978.4 1018 55.9
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 1.6e-266 923.3 1041 51.9
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 5.3e-265 918.3 619 75.0
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.2e-262 909.1 970 55.8
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 3.3e-259 899.0 1047 51.3
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 5.0e-255 885.2 1049 50.1
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 2.2e-242 843.2 552 77.9
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 1.7e-239 833.6 479 88.1
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 1.6e-221 773.9 446 88.3
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 1.5e-203 714.1 1036 44.6
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 1.3e-191 674.5 437 77.8
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 3.6e-181 639.8 1020 41.4
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 1.5e-179 634.4 385 83.4
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 4.2e-177 626.3 399 77.2
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.9e-175 619.8 481 67.8
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 9.9e-171 605.1 514 60.5
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 2.5e-166 590.5 462 66.5
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 3.1e-164 583.6 1054 37.4
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 1.5e-142 511.5 424 62.3
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.7e-141 506.9 373 70.0
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.4e-139 500.4 367 70.0
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.4e-139 500.4 367 70.0
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.5e-138 496.1 372 71.2
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 2.7e-136 490.7 322 75.5
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 1.5e-134 485.0 508 56.9
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 2.1e-128 464.5 572 50.3
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 7.7e-123 446.0 1079 32.9
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 2.2e-122 444.5 666 43.2
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 6.5e-122 443.0 586 45.1
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 7.2e-105 386.3 308 66.6
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 3.3e-97 360.9 294 63.9
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 1.9e-89 335.1 195 85.6
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.7e-88 330.5 512 43.4
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 1.4e-84 318.9 293 60.8
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 1.1e-73 282.7 503 36.8
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 1.5e-73 282.3 185 77.8
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 3.1e-71 274.6 405 44.9
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 1.4e-68 265.8 419 43.0
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 3.4e-62 244.6 135 87.4
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 7.8e-59 233.4 298 47.3
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.4e-55 221.9 241 56.0
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.5e-51 208.0 234 54.7
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 3.9e-50 204.5 159 68.6
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 5.1e-50 204.1 162 69.1
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 3.3e-49 201.4 127 79.5
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 1.1e-44 186.4 138 70.3
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 3.2e-44 184.9 191 50.3
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 6.0e-35 154.1 176 52.8
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 2.3e-34 152.1 253 41.5
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.3e-33 148.3 112 69.6
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 9.3e-28 130.2 94 70.2
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 7.9e-27 127.1 216 39.8
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 2.2e-24 119.0 88 63.6
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 3.4e-22 111.7 273 33.7
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 1.0e-13 83.6 55 76.4
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 2.2e-13 82.4 72 51.4
MBI19_g01203_MAGBIO Magnolia biondii HOM05D001745 ORTHO05D001772 4.7e-11 74.7 63 58.7
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 1.0e-10 73.6 115 39.1
Lsat_1_v5_gn_8_37500 Lactuca sativa HOM05D003233 ORTHO05D003694 5.2e-10 71.2 49 67.3
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 1.8e-07 62.8 84 45.2


User provided reference genes

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